These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1175#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 661 fasta sequence [GAATCCCCCGAGGTNCACAGAAAAGTGGTCCCTTTGCAAAAGCGTTCTTCAGCTGGAAAATCATGGCAAACGAGGCCGAAGACCACCTAATTGCCATAAGATTGCAACAGCAGTTTGACAAAGAATCAATCGACATAAGTTCTGGCGAGGATGATGATTTAAAAGTCGATTCTATTGAACGGGATCGTCTGCTGGCGGTGCAACTTCAAGCGCAGTACCAAGCCGAATCGGTTGATTTGCTTTCCGATAGCGATGATGATGTTATATTACAAGCCACAGCTGCATCCGCAGATACACCAAAACAAAAGCCAAAACAATCATCCACCGTGCAAAGCGGAATCAACTATGTCCACACTGTTCAGGAGCCACAACTTTTTAAGGCAAAGACCTCGGATCTGAACAGCTACGAATATTTCATAGACGAACTGCAGATTTACGTGGACATGGAGAACAACTTTGAATGGAAATTCATCGATATGCTGCTGCCCGACATTCGAGCGATATTTAACAAATTCGATGCACTGTTTCTTTCAGTCTCCGATTACAGAAGAAAAAAATTGACATTATGTGGTCCGACGCAATGGGTAACTCACTCACGAACAGGAATTTCAATGATGATCAAGGCAGATATTTAATCGCACTGAACGGACCACTGCTTACA] [+] EMBL AL933098 [GAATCCCCCGAGGTNCACAGAAAAGTGGTCCCTTTGCAAAAGCGTTCTTCAGCTGGAAAATCATGGCAAACGAGGCCGAAGACCACCTAATTGCCATAAGATTGCAACAGCAGTTTGACAAAGAATCAATCGACATAAGTTCTGGCGAGGATGATGATTTAAAAGTCGATTCTATTGAACGGGATCGTCTGCTGGCGGTGCAACTTCAAGCGCAGTACCAAGCCGAATCGGTTGATTTGCTTTCCGATAGCGATGATGATGTTATATTACAAGCCACAGCTGCATCCGCAGATACACCAAAACAAAAGCCAAAACAATCATCCACCGTGCAAAGCGGAATCAACTATGTCCACACTGTTCAGGAGCCACAACTTTTTAAGGCAAAGACCTCGGATCTGAACAGCTACGAATATTTCATAGACGAACTGCAGATTTACGTGGACATGGAGAACAACTTTGAATGGAAATTCATCGATATGCTGCTGCCCGACATTCGAGCGATATTTAACAAATTCGATGCACTGTTTCTTTCAGTCTCCGATTACAGAAGAAAAAAATTGACATTATGTGGTCCGACGCAATGGGTAACTCACTCACGAACAGGAATTTCAATGATGATCAAGGCAGATATTTAATCGCACTGAACGGACCACTGCTTACA] consensusID : consensus_1175#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 262 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGTTCGAGCGATATTTAACAAATTCGATGCACTGTTCTTTCAGTCTCGATTACAGAAGAAAAAAATTGACATTATGTGGTCCGACGCAATGGGTAACTCACTCACGAACAGGAATTTCAATGATGATCAAGGCAGATATTTAATCGCACTGAACGGACCACTGCTCACATTACGGCCCCGTATCGAAATCATCAGTATAATTCTGCATGAAATGATACACGCCCTGCTTAAAATAGA] [+] EMBL BM580002 [CCGCGGACGCGTGGGCGGACGCGTGGGTTCGAGCGATATTTAACAAATTCGATGCACTGTTCTTTCAGTCTCGATTACAGAAGAAAAAAATTGACATTATGTGGTCCGACGCAATGGGTAACTCACTCACGAACAGGAATTTCAATGATGATCAAGGCAGATATTTAATCGCACTGAACGGACCACTGCTCACATTACGGCCCCGTATCGAAATCATCAGTATAATTCTGCATGAAATGATACACGCCCTGCTTAAAATAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1175#0 GAATCCCCCGAGGTNCACAGAAAAGTGGTCCCTTTGCAAAAGCGTTCTTCAGCTGGAAAA 60 consensus_1175#1 ------------------------------------------------------------ consensus_1175#0 TCATGGCAAACGAGGCCGAAGACCACCTAATTGCCATAAGATTGCAACAGCAGTTTGACA 120 consensus_1175#1 ------------------------------------------------------------ consensus_1175#0 AAGAATCAATCGACATAAGTTCTGGCGAGGATGATGATTTAAAAGTCGATTCTATTGAAC 180 consensus_1175#1 ------------------------------------------------------------ consensus_1175#0 GGGATCGTCTGCTGGCGGTGCAACTTCAAGCGCAGTACCAAGCCGAATCGGTTGATTTGC 240 consensus_1175#1 ------------------------------------------------------------ consensus_1175#0 TTTCCGATAGCGATGATGATGTTATATTACAAGCCACAGCTGCATCCGCAGATACACCAA 300 consensus_1175#1 ------------------------------------------------------------ consensus_1175#0 AACAAAAGCCAAAACAATCATCCACCGTGCAAAGCGGAATCAACTATGTCCACACTGTTC 360 consensus_1175#1 ------------------------------------------------------------ consensus_1175#0 AGGAGCCACAACTTTTTAAGGCAAAGACCTCGGATCTGAACAGCTACGAATATTTCATAG 420 consensus_1175#1 ------------------------------------------------------------ consensus_1175#0 ACGAACTGCAGATTTACGTGGACATGGAGAACAACTTTGAATGGAAATTCATCGATATGC 480 consensus_1175#1 ----------------------------------------CCGCGGACGCGTGG----GC 16 * * * * * ** consensus_1175#0 TGCTGCCCGACATTCGAGCGATATTTAACAAATTCGATGCACTGTTTCTTTCAGTCTCCG 540 consensus_1175#1 GGACGCGTGG-GTTCGAGCGATATTTAACAAATTCGATGCACTGTT-CTTTCAGTCTC-G 73 * ** * ********************************** *********** * consensus_1175#0 ATTACAGAAGAAAAAAATTGACATTATGTGGTCCGACGCAATGGGTAACTCACTCACGAA 600 consensus_1175#1 ATTACAGAAGAAAAAAATTGACATTATGTGGTCCGACGCAATGGGTAACTCACTCACGAA 133 ************************************************************ consensus_1175#0 CAGGAATTTCAATGATGATCAAGGCAGATATTTAATCGCACTGAACGGACCACTGCTTAC 660 consensus_1175#1 CAGGAATTTCAATGATGATCAAGGCAGATATTTAATCGCACTGAACGGACCACTGCTCAC 193 ********************************************************* ** consensus_1175#0 A----------------------------------------------------------- 661 consensus_1175#1 ATTACGGCCCCGTATCGAAATCATCAGTATAATTCTGCATGAAATGATACACGCCCTGCT 253 * consensus_1175#0 --------- consensus_1175#1 TAAAATAGA 262 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||