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Anopheles gambiae
cluster # 1179 cluster # 1179       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1179#0 length = 698 sequences # 1  
consensus_1179#1 length = 327 sequences # 1  

consensusID : consensus_1179#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 698
fasta sequence
                              [TTCACAATATATGTAACTATGTGTAAACTAATTCAGAATGTTGAATGGTTGCGGCAGGAAAATAATATAGATTTCAAACAAACAAAATGCTCCACCAAAAACAATCCTCCAGCGCTCCCAGCATAAAGCGATGGGTTTTGTTTAGGTGGAAATTGTATCGCACACATTTAAAGCAATGTTATGTTTCTGTTATGTTTCATCATTTTTCCTACAGCATAGTACGGAAGCTAAATAGCTCACACACACATTTCACAACCACTTCTCAGCTATCCGGTTTCGTTACCGTAAGTGTCAGAGCTATGGAAGAAGTGCAGAAGGAAGCTATTTCGATATGCGTGTAGTGTGTGTTTGGTACATTTTTAGCAGAAAGACTGTACTCGTTTGACGGACGGACAAGACGGACAGAGCGTGCGGAAGTACCGCAATCTCAGAATGATTTGTGATGAATAAGGCGACGAGGCCATTTCTAATACGCAAATCAACTGCAGGCCATTCGTCTTGCTCAGGACCTATCAGGAGAAACGGTTCAGAAATGTAAAGTATAGGCACAGGAAAAGATCGAGCTGTACTGCTGCCGTAACATCTTAATTCACACACCTCTTAGCAAAGTGTTGCAAAACACTGGCCACAATAGCTCCCACATAGACACCTCATAAACACATTCACACACTTTCAACGTTTCACCAACCAATGAAGCA]

[+] EMBL BX627191             [TTCACAATATATGTAACTATGTGTAAACTAATTCAGAATGTTGAATGGTTGCGGCAGGAAAATAATATAGATTTCAAACAAACAAAATGCTCCACCAAAAACAATCCTCCAGCGCTCCCAGCATAAAGCGATGGGTTTTGTTTAGGTGGAAATTGTATCGCACACATTTAAAGCAATGTTATGTTTCTGTTATGTTTCATCATTTTTCCTACAGCATAGTACGGAAGCTAAATAGCTCACACACACATTTCACAACCACTTCTCAGCTATCCGGTTTCGTTACCGTAAGTGTCAGAGCTATGGAAGAAGTGCAGAAGGAAGCTATTTCGATATGCGTGTAGTGTGTGTTTGGTACATTTTTAGCAGAAAGACTGTACTCGTTTGACGGACGGACAAGACGGACAGAGCGTGCGGAAGTACCGCAATCTCAGAATGATTTGTGATGAATAAGGCGACGAGGCCATTTCTAATACGCAAATCAACTGCAGGCCATTCGTCTTGCTCAGGACCTATCAGGAGAAACGGTTCAGAAATGTAAAGTATAGGCACAGGAAAAGATCGAGCTGTACTGCTGCCGTAACATCTTAATTCACACACCTCTTAGCAAAGTGTTGCAAAACACTGGCCACAATAGCTCCCACATAGACACCTCATAAACACATTCACACACTTTCAACGTTTCACCAACCAATGAAGCA]


>consensus_1179#0 TTCACAATATATGTAACTATGTGTAAACTAATTCAGAATGTTGAATGGTTGCGGCAGGAA AATAATATAGATTTCAAACAAACAAAATGCTCCACCAAAAACAATCCTCCAGCGCTCCCA GCATAAAGCGATGGGTTTTGTTTAGGTGGAAATTGTATCGCACACATTTAAAGCAATGTT ATGTTTCTGTTATGTTTCATCATTTTTCCTACAGCATAGTACGGAAGCTAAATAGCTCAC ACACACATTTCACAACCACTTCTCAGCTATCCGGTTTCGTTACCGTAAGTGTCAGAGCTA TGGAAGAAGTGCAGAAGGAAGCTATTTCGATATGCGTGTAGTGTGTGTTTGGTACATTTT TAGCAGAAAGACTGTACTCGTTTGACGGACGGACAAGACGGACAGAGCGTGCGGAAGTAC CGCAATCTCAGAATGATTTGTGATGAATAAGGCGACGAGGCCATTTCTAATACGCAAATC AACTGCAGGCCATTCGTCTTGCTCAGGACCTATCAGGAGAAACGGTTCAGAAATGTAAAG TATAGGCACAGGAAAAGATCGAGCTGTACTGCTGCCGTAACATCTTAATTCACACACCTC TTAGCAAAGTGTTGCAAAACACTGGCCACAATAGCTCCCACATAGACACCTCATAAACAC ATTCACACACTTTCAACGTTTCACCAACCAATGAAGCA



consensusID : consensus_1179#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 327
fasta sequence
                              [GCGGCAGGAAAAGAAAATAGATTTCAAACAAACAAACAAACAAACAAACAAAATGCTCCACCAAAAACAATCCTCCAGCGCTCCCAGCATAAAGCGATGGGTTTTGTTTAGGTGGAAATTGTATCGCACACATTTAAAGCAATGTTATGTTTCTGTTATGTTTCATCATTTTTCCTACAGCACAGTACGGAAGCTAAATAGCTCACACACACATTTCACAACCACTTCTCAGCTATCAGGTTTCGTTACCGTAAGTGTCAGAGCTATGGAAGGAGTGTAGAAGGAAGCTATTTCGATATGCGTGTAGTGTGTGTTTGGTACATTTTT]

[+] EMBL BX616451             [GCGGCAGGAAAAGAAAATAGATTTCAAACAAACAAACAAACAAACAAACAAAATGCTCCACCAAAAACAATCCTCCAGCGCTCCCAGCATAAAGCGATGGGTTTTGTTTAGGTGGAAATTGTATCGCACACATTTAAAGCAATGTTATGTTTCTGTTATGTTTCATCATTTTTCCTACAGCACAGTACGGAAGCTAAATAGCTCACACACACATTTCACAACCACTTCTCAGCTATCAGGTTTCGTTACCGTAAGTGTCAGAGCTATGGAAGGAGTGTAGAAGGAAGCTATTTCGATATGCGTGTAGTGTGTGTTTGGTACATTTTT]


>consensus_1179#1 GCGGCAGGAAAAGAAAATAGATTTCAAACAAACAAACAAACAAACAAACAAAATGCTCCA CCAAAAACAATCCTCCAGCGCTCCCAGCATAAAGCGATGGGTTTTGTTTAGGTGGAAATT GTATCGCACACATTTAAAGCAATGTTATGTTTCTGTTATGTTTCATCATTTTTCCTACAG CACAGTACGGAAGCTAAATAGCTCACACACACATTTCACAACCACTTCTCAGCTATCAGG TTTCGTTACCGTAAGTGTCAGAGCTATGGAAGGAGTGTAGAAGGAAGCTATTTCGATATG CGTGTAGTGTGTGTTTGGTACATTTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1179#0      TTCACAATATATGTAACTATGTGTAAACTAATTCAGAATGTTGAATGGTTGCGGCAGGAA 60
consensus_1179#1      ----------------------------GCGGCAGGAAAAGAAAATAGATTT--CAAACA 30
                                                         ***     *** * *    **   *

consensus_1179#0      AATAATATAGATTTCAAACAAACAAAATGCTCCACCAAAAACAATCCTCCAGCGCTCCCA 120
consensus_1179#1      AACAA-ACAAA---CAAACAAACAAAATGCTCCACCAAAAACAATCCTCCAGCGCTCCCA 86
                      ** ** * * *   **********************************************

consensus_1179#0      GCATAAAGCGATGGGTTTTGTTTAGGTGGAAATTGTATCGCACACATTTAAAGCAATGTT 180
consensus_1179#1      GCATAAAGCGATGGGTTTTGTTTAGGTGGAAATTGTATCGCACACATTTAAAGCAATGTT 146
                      ************************************************************

consensus_1179#0      ATGTTTCTGTTATGTTTCATCATTTTTCCTACAGCATAGTACGGAAGCTAAATAGCTCAC 240
consensus_1179#1      ATGTTTCTGTTATGTTTCATCATTTTTCCTACAGCACAGTACGGAAGCTAAATAGCTCAC 206
                      ************************************ ***********************

consensus_1179#0      ACACACATTTCACAACCACTTCTCAGCTATCCGGTTTCGTTACCGTAAGTGTCAGAGCTA 300
consensus_1179#1      ACACACATTTCACAACCACTTCTCAGCTATCAGGTTTCGTTACCGTAAGTGTCAGAGCTA 266
                      ******************************* ****************************

consensus_1179#0      TGGAAGAAGTGCAGAAGGAAGCTATTTCGATATGCGTGTAGTGTGTGTTTGGTACATTTT 360
consensus_1179#1      TGGAAGGAGTGTAGAAGGAAGCTATTTCGATATGCGTGTAGTGTGTGTTTGGTACATTTT 326
                      ****** **** ************************************************

consensus_1179#0      TAGCAGAAAGACTGTACTCGTTTGACGGACGGACAAGACGGACAGAGCGTGCGGAAGTAC 420
consensus_1179#1      T----------------------------------------------------------- 327
                      *                                                           

consensus_1179#0      CGCAATCTCAGAATGATTTGTGATGAATAAGGCGACGAGGCCATTTCTAATACGCAAATC 480
consensus_1179#1      ------------------------------------------------------------
                                                                                  

consensus_1179#0      AACTGCAGGCCATTCGTCTTGCTCAGGACCTATCAGGAGAAACGGTTCAGAAATGTAAAG 540
consensus_1179#1      ------------------------------------------------------------
                                                                                  

consensus_1179#0      TATAGGCACAGGAAAAGATCGAGCTGTACTGCTGCCGTAACATCTTAATTCACACACCTC 600
consensus_1179#1      ------------------------------------------------------------
                                                                                  

consensus_1179#0      TTAGCAAAGTGTTGCAAAACACTGGCCACAATAGCTCCCACATAGACACCTCATAAACAC 660
consensus_1179#1      ------------------------------------------------------------
                                                                                  

consensus_1179#0      ATTCACACACTTTCAACGTTTCACCAACCAATGAAGCA 698
consensus_1179#1      --------------------------------------
                                                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)