cluster # 1187

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Anopheles gambiae
cluster # 1187 cluster # 1187 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1187#0 length = 594 sequences # 1

consensus_1187#1 length = 573 sequences # 1

consensusID : consensus_1187#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 594
fasta sequence

                              [CGGACTGGTAACGTTCCTGCAAATGTCTGGCATCAACGCGGTGCTGTTTTATGCTACAGATATTTTCATGGTAAATTACATACAAAATACTGTAGGATTCGCTTAATAACACGCCGGGGTCTTTCTTCAACAGAACGCTTCGGATTCGCTTAACCACGAGGTCGCTACCATTATCGTGGGTGCAATGCAGTTCTTCGGCACACTGCTAGCAGCATTCACCGTCGATCGAGTCGGACGCCGCTGGCTGTTAATGATTTCGGCCATCATAATGTGCGTATCGCATGTTGTTCTGGGCGTGTACTTTCACCTACTGCAAAACAGTCCAGCACAGGTGGAAAATCTCGAATGGTTACCCGTGTTTGCGCTGTCCCTGTTTGTGACGATGTTTTCGATCGGCTTTGGGCCCGTACCGTGGATCATGATCGGTGAAGTGTTTGCGATCGACGTGAAAGATCTCGCCAGCTCGCTGGCAACGTTCACCAGCTACGCACTGTCCTTTATGATGACGAAAACGTTTAATCCGCTTCGGAATGGGCTANGCGANGCTGGCACATTTTGGCTGGTTGGTGGATTCTGTATGCTTGGTGNCATTTT]

[+] EMBL BX627987             [CGGACTGGTAACGTTCCTGCAAATGTCTGGCATCAACGCGGTGCTGTTTTATGCTACAGATATTTTCATGGTAAATTACATACAAAATACTGTAGGATTCGCTTAATAACACGCCGGGGTCTTTCTTCAACAGAACGCTTCGGATTCGCTTAACCACGAGGTCGCTACCATTATCGTGGGTGCAATGCAGTTCTTCGGCACACTGCTAGCAGCATTCACCGTCGATCGAGTCGGACGCCGCTGGCTGTTAATGATTTCGGCCATCATAATGTGCGTATCGCATGTTGTTCTGGGCGTGTACTTTCACCTACTGCAAAACAGTCCAGCACAGGTGGAAAATCTCGAATGGTTACCCGTGTTTGCGCTGTCCCTGTTTGTGACGATGTTTTCGATCGGCTTTGGGCCCGTACCGTGGATCATGATCGGTGAAGTGTTTGCGATCGACGTGAAAGATCTCGCCAGCTCGCTGGCAACGTTCACCAGCTACGCACTGTCCTTTATGATGACGAAAACGTTTAATCCGCTTCGGAATGGGCTANGCGANGCTGGCACATTTTGGCTGGTTGGTGGATTCTGTATGCTTGGTGNCATTTT]




>consensus_1187#0
CGGACTGGTAACGTTCCTGCAAATGTCTGGCATCAACGCGGTGCTGTTTTATGCTACAGA
TATTTTCATGGTAAATTACATACAAAATACTGTAGGATTCGCTTAATAACACGCCGGGGT
CTTTCTTCAACAGAACGCTTCGGATTCGCTTAACCACGAGGTCGCTACCATTATCGTGGG
TGCAATGCAGTTCTTCGGCACACTGCTAGCAGCATTCACCGTCGATCGAGTCGGACGCCG
CTGGCTGTTAATGATTTCGGCCATCATAATGTGCGTATCGCATGTTGTTCTGGGCGTGTA
CTTTCACCTACTGCAAAACAGTCCAGCACAGGTGGAAAATCTCGAATGGTTACCCGTGTT
TGCGCTGTCCCTGTTTGTGACGATGTTTTCGATCGGCTTTGGGCCCGTACCGTGGATCAT
GATCGGTGAAGTGTTTGCGATCGACGTGAAAGATCTCGCCAGCTCGCTGGCAACGTTCAC
CAGCTACGCACTGTCCTTTATGATGACGAAAACGTTTAATCCGCTTCGGAATGGGCTANG
CGANGCTGGCACATTTTGGCTGGTTGGTGGATTCTGTATGCTTGGTGNCATTTT

consensusID : consensus_1187#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 573
fasta sequence

                              [CCGCCCACGCGTCCGCCCGTACCGTGGATCATGATCGGTGAAGTGTTTGCGATCGACGTGAAAGATCTCGCCAGCTCGCTGGCAACGTTCACCAGCTACGCACTGTCCTTTATGATGACGAAAACGTTTAATCCGCTTCGGAATGGGCTAGGCGAGGCTGGCACATTTTGGCTGTTTGGTGGATTCTGTATGCTTGGTGCCATTTTCGTGTTTCTATTCGTGCCGGAAACAAAGGGTAAAACATTCGATCAGATACAAAAACGGTTAGCAAGCAGCAAAGTGTACTTCAGGGCGGAAAAGTAAGTGTTGTTGCGTGGGTAATTTTTATTTGAATTGCTTTTAGTATAATAGTGGACAACAAACCAACAATTTCGATTCTTTTTTGAGGCCCCCAACTAGTAAATCTAGATCTAGACTCAAGATAGTAAATCTAACTATCTCGTAGCTGATGTCCTAATATGACCGTATCGAAGGTACCAAAGGGGCAAAGAATTTATTGCAATTCGGTGAAAATCATTTACTCGATTTCATTAGTAGTACATATATGTAGTCACCCGATATTAAAAAGAATAA]

[+] EMBL BM612909             [CCGCCCACGCGTCCGCCCGTACCGTGGATCATGATCGGTGAAGTGTTTGCGATCGACGTGAAAGATCTCGCCAGCTCGCTGGCAACGTTCACCAGCTACGCACTGTCCTTTATGATGACGAAAACGTTTAATCCGCTTCGGAATGGGCTAGGCGAGGCTGGCACATTTTGGCTGTTTGGTGGATTCTGTATGCTTGGTGCCATTTTCGTGTTTCTATTCGTGCCGGAAACAAAGGGTAAAACATTCGATCAGATACAAAAACGGTTAGCAAGCAGCAAAGTGTACTTCAGGGCGGAAAAGTAAGTGTTGTTGCGTGGGTAATTTTTATTTGAATTGCTTTTAGTATAATAGTGGACAACAAACCAACAATTTCGATTCTTTTTTGAGGCCCCCAACTAGTAAATCTAGATCTAGACTCAAGATAGTAAATCTAACTATCTCGTAGCTGATGTCCTAATATGACCGTATCGAAGGTACCAAAGGGGCAAAGAATTTATTGCAATTCGGTGAAAATCATTTACTCGATTTCATTAGTAGTACATATATGTAGTCACCCGATATTAAAAAGAATAA]




>consensus_1187#1
CCGCCCACGCGTCCGCCCGTACCGTGGATCATGATCGGTGAAGTGTTTGCGATCGACGTG
AAAGATCTCGCCAGCTCGCTGGCAACGTTCACCAGCTACGCACTGTCCTTTATGATGACG
AAAACGTTTAATCCGCTTCGGAATGGGCTAGGCGAGGCTGGCACATTTTGGCTGTTTGGT
GGATTCTGTATGCTTGGTGCCATTTTCGTGTTTCTATTCGTGCCGGAAACAAAGGGTAAA
ACATTCGATCAGATACAAAAACGGTTAGCAAGCAGCAAAGTGTACTTCAGGGCGGAAAAG
TAAGTGTTGTTGCGTGGGTAATTTTTATTTGAATTGCTTTTAGTATAATAGTGGACAACA
AACCAACAATTTCGATTCTTTTTTGAGGCCCCCAACTAGTAAATCTAGATCTAGACTCAA
GATAGTAAATCTAACTATCTCGTAGCTGATGTCCTAATATGACCGTATCGAAGGTACCAA
AGGGGCAAAGAATTTATTGCAATTCGGTGAAAATCATTTACTCGATTTCATTAGTAGTAC
ATATATGTAGTCACCCGATATTAAAAAGAATAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1187#0      CGGACTGGTAACGTTCCTGCAAATGTCTGGCATCAACG-CGGTGCTGTTTTATGCTACAG 59
consensus_1187#1      ----CCGCCCACGCGTCCGCCCGTACCGTGGATCATGATCGGTGAAGTGTT-TGCGATCG 55
                          * *   ***   * **   *  *  * ****    *****  ** ** *** *  *

consensus_1187#0      ATATTTTCATGGTAAATTACATACAAAATACTG-TAGGATTCGCTTAATAACACGCCGGG 118
consensus_1187#1      A------CGTGAAAGATCTCGC-CAGCTCGCTGGCAACGTTCACC-AGCTACGCACTGTC 107
                      *      * **  * **  *   **     ***  *   *** *  *   ** * * *  

consensus_1187#0      GTCTTTCTTCAACAGAACGCTTCGGATTCGCTTAACCACGAGGTCGCTACCATTATCGTG 178
consensus_1187#1      CTTTATGATGACGAAAACGTTT--AATCCGCTTCGGAATGGGCTAGGCGAGGCTGGCACA 165
                       * * *  * *  * **** **   ** *****    * * * * *       *  *   

consensus_1187#0      GGT--GCAATGCAGTTC-TTCGGCACACTGCTAGCAGCATTCACCGTCGATCGAGTCG-G 234
consensus_1187#1      TTTTGGCTGTTTGGTGGATTCTGTATGCT--TGGTGCCATTT-TCGTGTTTCTATTCGTG 222
                        *  **  *   **   *** * *  **  * *   ****   ***   ** * *** *

consensus_1187#0      ACGCCGCTGGCTGTTAATGATTTCGGCCATCATAATGTGCGTATCGCATGTTGTTCTGGG 294
consensus_1187#1      CCGGAAACAAAGGGTAAAACATTCGATCAGATACAAAAACGGTTAGCAAGCAGC----AA 278
                       **         * ***    ****  **     *    **  * *** *  *       

consensus_1187#0      CGTGTACTTTCACCTACTGCAAAACAGTCCAGCACAGGTGGAAAATCTCGAATGGTTACC 354
consensus_1187#1      AGTGTACTTCAG--GGCGGAAAAGTAAGTGTTGTTGCGTGGGTAATTTTTATTTGAAT-- 334
                       ********       * * ***  *           ****  *** *  * * *     

consensus_1187#0      CGTGTTTGCGCTGTCCCTGTTTGTGACGATGTTTTCGATCGGCTTTGGGCCCGTACCGTG 414
consensus_1187#1      --TGCTTTTAGTATAATAGTGGACAACAAA-----CCAACAATTTCGATTCTTTTTTGAG 387
                        ** **    * *    **     ** *      * * *   ** *   *  *   * *

consensus_1187#0      GATCATGATCGGTGAAGT---GTTTGCGATCGACGTGAAAGATCTCGCCAGCTCGCTGGC 471
consensus_1187#1      GCCCCCAACTAGTAAATCTAGATCTAGACTCAAGATAGTAAATCTAACTATCTCGTAGCT 447
                      *  *   *   ** **      * *    ** *  *   * ****  * * ****  *  

consensus_1187#0      AACGTTCACCAGCTACGCACTGTCCTTTATGATGACGAAAACGTTTAATCCGCTTCGGAA 531
consensus_1187#1      GATGT---CCTAATATG-ACCGTA-TCGAAGGTACCAAAGGGGCAAAGAATTTATTGCAA 502
                       * **   **   ** * ** **  *  * * *  * **   *   *       * * **

consensus_1187#0      TGGGCTANGCGANGCTGGCACATTTTGGCTGGTTGGTGGATTCTGTA--TGCTTGGTGNC 589
consensus_1187#1      TTCGGTGAAAATCATTTACTCGATTTCATTAGTAGTACATATATGTAGTCACCCGATATT 562
                      *  * *         *  * *  ***   * ** *      * ****    *  * *   

consensus_1187#0      ATTTT------ 594
consensus_1187#1      AAAAAGAATAA 573
                      *