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Anopheles gambiae
cluster # 1205 cluster # 1205       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1205#0 length = 901 sequences # 1  
consensus_1205#1 length = 805 sequences # 1  

consensusID : consensus_1205#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 901
fasta sequence
                              [CAGATCGGCNGAGGGNNAATTTGCGATCGGGTACTACCCGCTCGCACAATGGGACGCGCAACTTTTGGATCATGAACGAACAGTTCCGGGTGGGTGCGTTGCGGCCCATCCTGCAGGACATTCGGCGCTTTGTGATACTGTCCGAGGAGACGGTGTTTCTGGACATTCGGCGATTTCCGCTCGGGTTTTCACAATAACCCGGAAGCAGCCACGAGGGCGCTTGNGCTGGGAGGCTTGCTTGGAAGCAGGGAGGCTTGGGGAAGAATTTTGGGTTGTTACCCGGGGANGGGAATTGCCGGCCTAAGGTTGTTCCCGGACGGGAAGGGAATTGAGCCTTGGGGCAGGGGCAAGCGGAGGTTCGTTACCAAACGCTTGGNAGCGGCCTTCCNGGAGCGGCATTTAATTTAGCCGGCCCCGGAAAGAAGGGGAACAAAGGTTTAACCAGTTAACCGTTTTAATTCCAAGCGCACTTAAACCAAAATTCCAATTGAAGGGCGGAAGGCCTTTAGAAGCATGGAAANTACCGGGACCANTTTACTTANTGGGACNGAAGCGGTTGGAAAGAAANACAGCTCCGAAGCCGCTTTTCCCTTGGAAAGGCACAACCGGAGGCTTGGGCGACACTGGGATGCCAGAAATCTGGGTCCTACAGGCCACAAGCATTCCGGGAACGCNGCCCAGGCGGCAAACATTTGGGGCTTGGAAGGTCTTGGCGACNGAGGTGGTTGGCAAAGGCTTCGCAAACAGGGGCAGAGCTATTACNCCGAGANGCAGGGAGGGCGCANCGCGTATTCCGTGAATGCCCGGNCGGGAGACGGTGCCCAGCATCGGTCNACAGTCCGGAAGCTTCGATGCAGGCCTGACCTGGAGCGGCGCCGGTGCGAGGTACAGCGGGGCGAAC]

[+] EMBL BX468592             [CAGATCGGCNGAGGGNNAATTTGCGATCGGGTACTACCCGCTCGCACAATGGGACGCGCAACTTTTGGATCATGAACGAACAGTTCCGGGTGGGTGCGTTGCGGCCCATCCTGCAGGACATTCGGCGCTTTGTGATACTGTCCGAGGAGACGGTGTTTCTGGACATTCGGCGATTTCCGCTCGGGTTTTCACAATAACCCGGAAGCAGCCACGAGGGCGCTTGNGCTGGGAGGCTTGCTTGGAAGCAGGGAGGCTTGGGGAAGAATTTTGGGTTGTTACCCGGGGANGGGAATTGCCGGCCTAAGGTTGTTCCCGGACGGGAAGGGAATTGAGCCTTGGGGCAGGGGCAAGCGGAGGTTCGTTACCAAACGCTTGGNAGCGGCCTTCCNGGAGCGGCATTTAATTTAGCCGGCCCCGGAAAGAAGGGGAACAAAGGTTTAACCAGTTAACCGTTTTAATTCCAAGCGCACTTAAACCAAAATTCCAATTGAAGGGCGGAAGGCCTTTAGAAGCATGGAAANTACCGGGACCANTTTACTTANTGGGACNGAAGCGGTTGGAAAGAAANACAGCTCCGAAGCCGCTTTTCCCTTGGAAAGGCACAACCGGAGGCTTGGGCGACACTGGGATGCCAGAAATCTGGGTCCTACAGGCCACAAGCATTCCGGGAACGCNGCCCAGGCGGCAAACATTTGGGGCTTGGAAGGTCTTGGCGACNGAGGTGGTTGGCAAAGGCTTCGCAAACAGGGGCAGAGCTATTACNCCGAGANGCAGGGAGGGCGCANCGCGTATTCCGTGAATGCCCGGNCGGGAGACGGTGCCCAGCATCGGTCNACAGTCCGGAAGCTTCGATGCAGGCCTGACCTGGAGCGGCGCCGGTGCGAGGTACAGCGGGGCGAAC]


>consensus_1205#0 CAGATCGGCNGAGGGNNAATTTGCGATCGGGTACTACCCGCTCGCACAATGGGACGCGCA ACTTTTGGATCATGAACGAACAGTTCCGGGTGGGTGCGTTGCGGCCCATCCTGCAGGACA TTCGGCGCTTTGTGATACTGTCCGAGGAGACGGTGTTTCTGGACATTCGGCGATTTCCGC TCGGGTTTTCACAATAACCCGGAAGCAGCCACGAGGGCGCTTGNGCTGGGAGGCTTGCTT GGAAGCAGGGAGGCTTGGGGAAGAATTTTGGGTTGTTACCCGGGGANGGGAATTGCCGGC CTAAGGTTGTTCCCGGACGGGAAGGGAATTGAGCCTTGGGGCAGGGGCAAGCGGAGGTTC GTTACCAAACGCTTGGNAGCGGCCTTCCNGGAGCGGCATTTAATTTAGCCGGCCCCGGAA AGAAGGGGAACAAAGGTTTAACCAGTTAACCGTTTTAATTCCAAGCGCACTTAAACCAAA ATTCCAATTGAAGGGCGGAAGGCCTTTAGAAGCATGGAAANTACCGGGACCANTTTACTT ANTGGGACNGAAGCGGTTGGAAAGAAANACAGCTCCGAAGCCGCTTTTCCCTTGGAAAGG CACAACCGGAGGCTTGGGCGACACTGGGATGCCAGAAATCTGGGTCCTACAGGCCACAAG CATTCCGGGAACGCNGCCCAGGCGGCAAACATTTGGGGCTTGGAAGGTCTTGGCGACNGA GGTGGTTGGCAAAGGCTTCGCAAACAGGGGCAGAGCTATTACNCCGAGANGCAGGGAGGG CGCANCGCGTATTCCGTGAATGCCCGGNCGGGAGACGGTGCCCAGCATCGGTCNACAGTC CGGAAGCTTCGATGCAGGCCTGACCTGGAGCGGCGCCGGTGCGAGGTACAGCGGGGCGAA C



consensusID : consensus_1205#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 805
fasta sequence
                              [GTTCCGGGTGGGTGCGCTGCGGCCTTTCCTGCAGGACATTCGGCGCTTTGTGATACTGTCCGAGGAGACGGTGTTTCTGGACTTTCGACGATTTCCGCTCGGGTTTCACAACAACCCGGAGCAGCACGAGGCGCTGCTGGTGCTGCTGGAGCAGGAGCTGGGAGATTTGGTGTACCGAAGGATGCCGCTAGTGTCCGGGGAGGATGATCTGGAGTGCAGCGAGTCGTACAACCTGACGCTCGGGGATATGCGCCGAGAGGGAAAGTACATACTTATCACCTACAATCATGAGGCAAGCTTAAATGAATCGGACATTATATGGAGAGCGTGGAAAAAACACTCGAGCGCTTTCCTGAAGCACACCGAGCTGGGCGAATGGATGCAGAATCTGTTCTCGCACAAGCATCCGGACGCGCCGCGCAACATTGGCTGGAGTCTGCACGGTGTGCAAGGCTTCCACGGGAGCTATAACGAAGAGGAGGCCACCTTCCTGATGCCGGCGGAACGTGCCAGCATCGTCAATCCGAAGCTGATGCAGCTGCTGAGCGGCCCGTGGAGTCAGCGAGCGAACGCGGTACTGGTGGACTTCTTCACCAACACCAATCTGGTCGAGCTGGCGGTTAGCACGAACCAGTACAAAACGCTACGCAATCCCGCGAACGAGGCCGTGGTGCTAGACATTCAGTGAGCTTGTGAATCGAGTGAATCCAAAGCGACAGAGTCTCGGTAGTTTGTTGGACGTTCGAATAGAGCATCATGAACATTTCATCGTGGAATGGGCGCAACTGATGGTCATTTTTGCCCT]

[+] EMBL BX616911             [GTTCCGGGTGGGTGCGCTGCGGCCTTTCCTGCAGGACATTCGGCGCTTTGTGATACTGTCCGAGGAGACGGTGTTTCTGGACTTTCGACGATTTCCGCTCGGGTTTCACAACAACCCGGAGCAGCACGAGGCGCTGCTGGTGCTGCTGGAGCAGGAGCTGGGAGATTTGGTGTACCGAAGGATGCCGCTAGTGTCCGGGGAGGATGATCTGGAGTGCAGCGAGTCGTACAACCTGACGCTCGGGGATATGCGCCGAGAGGGAAAGTACATACTTATCACCTACAATCATGAGGCAAGCTTAAATGAATCGGACATTATATGGAGAGCGTGGAAAAAACACTCGAGCGCTTTCCTGAAGCACACCGAGCTGGGCGAATGGATGCAGAATCTGTTCTCGCACAAGCATCCGGACGCGCCGCGCAACATTGGCTGGAGTCTGCACGGTGTGCAAGGCTTCCACGGGAGCTATAACGAAGAGGAGGCCACCTTCCTGATGCCGGCGGAACGTGCCAGCATCGTCAATCCGAAGCTGATGCAGCTGCTGAGCGGCCCGTGGAGTCAGCGAGCGAACGCGGTACTGGTGGACTTCTTCACCAACACCAATCTGGTCGAGCTGGCGGTTAGCACGAACCAGTACAAAACGCTACGCAATCCCGCGAACGAGGCCGTGGTGCTAGACATTCAGTGAGCTTGTGAATCGAGTGAATCCAAAGCGACAGAGTCTCGGTAGTTTGTTGGACGTTCGAATAGAGCATCATGAACATTTCATCGTGGAATGGGCGCAACTGATGGTCATTTTTGCCCT]


>consensus_1205#1 GTTCCGGGTGGGTGCGCTGCGGCCTTTCCTGCAGGACATTCGGCGCTTTGTGATACTGTC CGAGGAGACGGTGTTTCTGGACTTTCGACGATTTCCGCTCGGGTTTCACAACAACCCGGA GCAGCACGAGGCGCTGCTGGTGCTGCTGGAGCAGGAGCTGGGAGATTTGGTGTACCGAAG GATGCCGCTAGTGTCCGGGGAGGATGATCTGGAGTGCAGCGAGTCGTACAACCTGACGCT CGGGGATATGCGCCGAGAGGGAAAGTACATACTTATCACCTACAATCATGAGGCAAGCTT AAATGAATCGGACATTATATGGAGAGCGTGGAAAAAACACTCGAGCGCTTTCCTGAAGCA CACCGAGCTGGGCGAATGGATGCAGAATCTGTTCTCGCACAAGCATCCGGACGCGCCGCG CAACATTGGCTGGAGTCTGCACGGTGTGCAAGGCTTCCACGGGAGCTATAACGAAGAGGA GGCCACCTTCCTGATGCCGGCGGAACGTGCCAGCATCGTCAATCCGAAGCTGATGCAGCT GCTGAGCGGCCCGTGGAGTCAGCGAGCGAACGCGGTACTGGTGGACTTCTTCACCAACAC CAATCTGGTCGAGCTGGCGGTTAGCACGAACCAGTACAAAACGCTACGCAATCCCGCGAA CGAGGCCGTGGTGCTAGACATTCAGTGAGCTTGTGAATCGAGTGAATCCAAAGCGACAGA GTCTCGGTAGTTTGTTGGACGTTCGAATAGAGCATCATGAACATTTCATCGTGGAATGGG CGCAACTGATGGTCATTTTTGCCCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1205#0      CAGATCGGCNGAGGGNNAATTTGCGATCGGGTACTACCCGCTCGCACAATGGGACGCGCA 60
consensus_1205#1      ------------------------------------------------------------
                                                                                  

consensus_1205#0      ACTTTTGGATCATGAACGAACAGTTCCGGGTGGGTGCGTTGCGGCCCATCCTGCAGGACA 120
consensus_1205#1      ----------------------GTTCCGGGTGGGTGCGCTGCGGCCTTTCCTGCAGGACA 38
                                            **************** *******  ************

consensus_1205#0      TTCGGCGCTTTGTGATACTGTCCGAGGAGACGGTGTTTCTGGACATTCGGCGATTTCCGC 180
consensus_1205#1      TTCGGCGCTTTGTGATACTGTCCGAGGAGACGGTGTTTCTGGACTTTCGACGATTTCCGC 98
                      ******************************************** **** **********

consensus_1205#0      TCGGGTTTTCACAATAACCCGGAAGCAGCCACGAGGGCGCTTGNGCTGGGAGGCTTGCTT 240
consensus_1205#1      TCGGGTTT-CACAACAACCCGGA-GCAGC-ACGAGG-CGCTGCTGGTGC--TGCTGGAGC 152
                      ******** ***** ******** ***** ****** ****   * **    *** *   

consensus_1205#0      GGAAGCAGGGAGGCTTGGGGAA--GAATTTTGG-GTTGTTACCCGGGGANGGGAATTGCC 297
consensus_1205#1      AGGAGCTGGGAGATTTGGTGTACCGAAGGATGCCGCTAGTGTCCGGGGAGGATGATCTGG 212
                       * *** *****  **** * *  ***   **  * *  *  ******* *   **    

consensus_1205#0      GGCCTAA--GGTTGTTC--CCGGACGGGAAGGGAATTGAGCCTTGGGGCAGGGGCAAGCG 353
consensus_1205#1      AGTGCAGCGAGTCGTACAACCTGACGCTCGGGGATATGCGCC-----GAGAGGGAAAGTA 267
                       *   *    ** ** *  ** ****    ****  ** ***     *   *** ***  

consensus_1205#0      GAGGTTCGTTACCAAACGCTTGGNAGCGGCCTTCCNGGAGCGGCATTTAATTTAGCCGGC 413
consensus_1205#1      CATACTTATCACCTACAATCATGAGGCAAGCTTAAATGAATCGGACATTATATGGAGAGC 327
                       *   *  * *** *       *  **   ***    **   * *  * ** * *   **

consensus_1205#0      CCCGGAAAGA-AGGGGAACAAAGGTTTAACCAGTTAACCGTTTTAATTCCAAGCGCACTT 472
consensus_1205#1      GTGGAAAAAACACTCGAGCGCTTTCCTGA--AGCACACCGAGCTGG--GCGAATGGATGC 383
                         * *** * *   ** *       * *  **   ****   *     * *  * *   

consensus_1205#0      AAACCAAAATTCCAATTGAAGGGCGGAAGGCCTTTAGAAGCATGGAAANTACCGGGACCA 532
consensus_1205#1      AGAATCTGTTCTCGCACAAGCATCCGGACGCGCCGCGCAACATTGGCTGGAGTCTGCACG 443
                      * *      *  *     *    * * * **     * * *** *     *    *  * 

consensus_1205#0      NTTTACTTAN-TGGGACNGAAGCGGT--TGGAAAGAAANACAGCTCC--GAAGCCGCTTT 587
consensus_1205#1      GTGTGCAAGGCTTCCACGGGAGCTATAACGAAGAGGAGGCCACCTTCCTGATGCCGGCGG 503
                       * * *     *   ** * ***  *   * * ** *   ** ** *  ** ****    

consensus_1205#0      TCCCTTGGAAAGGCA-CAACCGGAGGCTTGGGCGAC-ACTGGGATGCCAGAAATCTGGGT 645
consensus_1205#1      AACGTGCCAGCATCGTCAATCCGAAGCTGATGCAGCTGCTGAGCGGCCCG-----TGGAG 558
                        * *   *    *  *** * ** ***   **  *  *** *  *** *     ***  

consensus_1205#0      CCTACAGGCCACAAGCATTCCGGGAACGCNGCCCAGGCGGCAAACATTTGGGGCTTGGAA 705
consensus_1205#1      TCAGCGAGCGA-ACGCGGTACTGGTGGACTTCTTCACCAACACCAATCTGG----TCGAG 613
                       *  *  ** * * **  * * **    *  *     *  **   ** ***    * ** 

consensus_1205#0      GGTCTTGGCGACNGAGGTGGTTGGCAAAGGCTTCGCAAAC--AGGGGCAGAGCTATTACN 763
consensus_1205#1      CTGGCGGTTAGCACGAACCAGTACAAAACGCTACGCAATCCCGCGAACGAGGCCGTGGTG 673
                            *    *         *   *** *** ***** *    *  *   **  *    

consensus_1205#0      CCGAGANGCAGGGAGGGCGCANCGCGTATTCCGTGAATGCCCGGNCGGGAGACGGTGCCC 823
consensus_1205#1      CT-AGACATTCAGTGAGC---TTGTGAATCGAGTGAAT-CCAAAGCGACAGA--GTCTCG 726
                      *  ***      * * **     * * **   ****** **    **  ***  **  * 

consensus_1205#0      AGCATCGGTCNACAGTCCGGA---AGCTTCGATGCAGGCCTGACC-TGGAGCGG-CGCCG 878
consensus_1205#1      GTAGTTTGTTGGACGTTCGAATAGAGCATC-ATGAACATTTCATCGTGGAATGGGCGCAA 785
                          *  **     ** ** *   *** ** *** *    * * * ****  ** ***  

consensus_1205#0      GTGCGAGGTACAGCGGGGCGAAC 901
consensus_1205#1      CTGATGGTCATTTTTGCCCT--- 805
                       **   *  *     *  *    




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)