These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1205#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 901 fasta sequence [CAGATCGGCNGAGGGNNAATTTGCGATCGGGTACTACCCGCTCGCACAATGGGACGCGCAACTTTTGGATCATGAACGAACAGTTCCGGGTGGGTGCGTTGCGGCCCATCCTGCAGGACATTCGGCGCTTTGTGATACTGTCCGAGGAGACGGTGTTTCTGGACATTCGGCGATTTCCGCTCGGGTTTTCACAATAACCCGGAAGCAGCCACGAGGGCGCTTGNGCTGGGAGGCTTGCTTGGAAGCAGGGAGGCTTGGGGAAGAATTTTGGGTTGTTACCCGGGGANGGGAATTGCCGGCCTAAGGTTGTTCCCGGACGGGAAGGGAATTGAGCCTTGGGGCAGGGGCAAGCGGAGGTTCGTTACCAAACGCTTGGNAGCGGCCTTCCNGGAGCGGCATTTAATTTAGCCGGCCCCGGAAAGAAGGGGAACAAAGGTTTAACCAGTTAACCGTTTTAATTCCAAGCGCACTTAAACCAAAATTCCAATTGAAGGGCGGAAGGCCTTTAGAAGCATGGAAANTACCGGGACCANTTTACTTANTGGGACNGAAGCGGTTGGAAAGAAANACAGCTCCGAAGCCGCTTTTCCCTTGGAAAGGCACAACCGGAGGCTTGGGCGACACTGGGATGCCAGAAATCTGGGTCCTACAGGCCACAAGCATTCCGGGAACGCNGCCCAGGCGGCAAACATTTGGGGCTTGGAAGGTCTTGGCGACNGAGGTGGTTGGCAAAGGCTTCGCAAACAGGGGCAGAGCTATTACNCCGAGANGCAGGGAGGGCGCANCGCGTATTCCGTGAATGCCCGGNCGGGAGACGGTGCCCAGCATCGGTCNACAGTCCGGAAGCTTCGATGCAGGCCTGACCTGGAGCGGCGCCGGTGCGAGGTACAGCGGGGCGAAC] [+] EMBL BX468592 [CAGATCGGCNGAGGGNNAATTTGCGATCGGGTACTACCCGCTCGCACAATGGGACGCGCAACTTTTGGATCATGAACGAACAGTTCCGGGTGGGTGCGTTGCGGCCCATCCTGCAGGACATTCGGCGCTTTGTGATACTGTCCGAGGAGACGGTGTTTCTGGACATTCGGCGATTTCCGCTCGGGTTTTCACAATAACCCGGAAGCAGCCACGAGGGCGCTTGNGCTGGGAGGCTTGCTTGGAAGCAGGGAGGCTTGGGGAAGAATTTTGGGTTGTTACCCGGGGANGGGAATTGCCGGCCTAAGGTTGTTCCCGGACGGGAAGGGAATTGAGCCTTGGGGCAGGGGCAAGCGGAGGTTCGTTACCAAACGCTTGGNAGCGGCCTTCCNGGAGCGGCATTTAATTTAGCCGGCCCCGGAAAGAAGGGGAACAAAGGTTTAACCAGTTAACCGTTTTAATTCCAAGCGCACTTAAACCAAAATTCCAATTGAAGGGCGGAAGGCCTTTAGAAGCATGGAAANTACCGGGACCANTTTACTTANTGGGACNGAAGCGGTTGGAAAGAAANACAGCTCCGAAGCCGCTTTTCCCTTGGAAAGGCACAACCGGAGGCTTGGGCGACACTGGGATGCCAGAAATCTGGGTCCTACAGGCCACAAGCATTCCGGGAACGCNGCCCAGGCGGCAAACATTTGGGGCTTGGAAGGTCTTGGCGACNGAGGTGGTTGGCAAAGGCTTCGCAAACAGGGGCAGAGCTATTACNCCGAGANGCAGGGAGGGCGCANCGCGTATTCCGTGAATGCCCGGNCGGGAGACGGTGCCCAGCATCGGTCNACAGTCCGGAAGCTTCGATGCAGGCCTGACCTGGAGCGGCGCCGGTGCGAGGTACAGCGGGGCGAAC] consensusID : consensus_1205#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 805 fasta sequence [GTTCCGGGTGGGTGCGCTGCGGCCTTTCCTGCAGGACATTCGGCGCTTTGTGATACTGTCCGAGGAGACGGTGTTTCTGGACTTTCGACGATTTCCGCTCGGGTTTCACAACAACCCGGAGCAGCACGAGGCGCTGCTGGTGCTGCTGGAGCAGGAGCTGGGAGATTTGGTGTACCGAAGGATGCCGCTAGTGTCCGGGGAGGATGATCTGGAGTGCAGCGAGTCGTACAACCTGACGCTCGGGGATATGCGCCGAGAGGGAAAGTACATACTTATCACCTACAATCATGAGGCAAGCTTAAATGAATCGGACATTATATGGAGAGCGTGGAAAAAACACTCGAGCGCTTTCCTGAAGCACACCGAGCTGGGCGAATGGATGCAGAATCTGTTCTCGCACAAGCATCCGGACGCGCCGCGCAACATTGGCTGGAGTCTGCACGGTGTGCAAGGCTTCCACGGGAGCTATAACGAAGAGGAGGCCACCTTCCTGATGCCGGCGGAACGTGCCAGCATCGTCAATCCGAAGCTGATGCAGCTGCTGAGCGGCCCGTGGAGTCAGCGAGCGAACGCGGTACTGGTGGACTTCTTCACCAACACCAATCTGGTCGAGCTGGCGGTTAGCACGAACCAGTACAAAACGCTACGCAATCCCGCGAACGAGGCCGTGGTGCTAGACATTCAGTGAGCTTGTGAATCGAGTGAATCCAAAGCGACAGAGTCTCGGTAGTTTGTTGGACGTTCGAATAGAGCATCATGAACATTTCATCGTGGAATGGGCGCAACTGATGGTCATTTTTGCCCT] [+] EMBL BX616911 [GTTCCGGGTGGGTGCGCTGCGGCCTTTCCTGCAGGACATTCGGCGCTTTGTGATACTGTCCGAGGAGACGGTGTTTCTGGACTTTCGACGATTTCCGCTCGGGTTTCACAACAACCCGGAGCAGCACGAGGCGCTGCTGGTGCTGCTGGAGCAGGAGCTGGGAGATTTGGTGTACCGAAGGATGCCGCTAGTGTCCGGGGAGGATGATCTGGAGTGCAGCGAGTCGTACAACCTGACGCTCGGGGATATGCGCCGAGAGGGAAAGTACATACTTATCACCTACAATCATGAGGCAAGCTTAAATGAATCGGACATTATATGGAGAGCGTGGAAAAAACACTCGAGCGCTTTCCTGAAGCACACCGAGCTGGGCGAATGGATGCAGAATCTGTTCTCGCACAAGCATCCGGACGCGCCGCGCAACATTGGCTGGAGTCTGCACGGTGTGCAAGGCTTCCACGGGAGCTATAACGAAGAGGAGGCCACCTTCCTGATGCCGGCGGAACGTGCCAGCATCGTCAATCCGAAGCTGATGCAGCTGCTGAGCGGCCCGTGGAGTCAGCGAGCGAACGCGGTACTGGTGGACTTCTTCACCAACACCAATCTGGTCGAGCTGGCGGTTAGCACGAACCAGTACAAAACGCTACGCAATCCCGCGAACGAGGCCGTGGTGCTAGACATTCAGTGAGCTTGTGAATCGAGTGAATCCAAAGCGACAGAGTCTCGGTAGTTTGTTGGACGTTCGAATAGAGCATCATGAACATTTCATCGTGGAATGGGCGCAACTGATGGTCATTTTTGCCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1205#0 CAGATCGGCNGAGGGNNAATTTGCGATCGGGTACTACCCGCTCGCACAATGGGACGCGCA 60 consensus_1205#1 ------------------------------------------------------------ consensus_1205#0 ACTTTTGGATCATGAACGAACAGTTCCGGGTGGGTGCGTTGCGGCCCATCCTGCAGGACA 120 consensus_1205#1 ----------------------GTTCCGGGTGGGTGCGCTGCGGCCTTTCCTGCAGGACA 38 **************** ******* ************ consensus_1205#0 TTCGGCGCTTTGTGATACTGTCCGAGGAGACGGTGTTTCTGGACATTCGGCGATTTCCGC 180 consensus_1205#1 TTCGGCGCTTTGTGATACTGTCCGAGGAGACGGTGTTTCTGGACTTTCGACGATTTCCGC 98 ******************************************** **** ********** consensus_1205#0 TCGGGTTTTCACAATAACCCGGAAGCAGCCACGAGGGCGCTTGNGCTGGGAGGCTTGCTT 240 consensus_1205#1 TCGGGTTT-CACAACAACCCGGA-GCAGC-ACGAGG-CGCTGCTGGTGC--TGCTGGAGC 152 ******** ***** ******** ***** ****** **** * ** *** * consensus_1205#0 GGAAGCAGGGAGGCTTGGGGAA--GAATTTTGG-GTTGTTACCCGGGGANGGGAATTGCC 297 consensus_1205#1 AGGAGCTGGGAGATTTGGTGTACCGAAGGATGCCGCTAGTGTCCGGGGAGGATGATCTGG 212 * *** ***** **** * * *** ** * * * ******* * ** consensus_1205#0 GGCCTAA--GGTTGTTC--CCGGACGGGAAGGGAATTGAGCCTTGGGGCAGGGGCAAGCG 353 consensus_1205#1 AGTGCAGCGAGTCGTACAACCTGACGCTCGGGGATATGCGCC-----GAGAGGGAAAGTA 267 * * ** ** * ** **** **** ** *** * *** *** consensus_1205#0 GAGGTTCGTTACCAAACGCTTGGNAGCGGCCTTCCNGGAGCGGCATTTAATTTAGCCGGC 413 consensus_1205#1 CATACTTATCACCTACAATCATGAGGCAAGCTTAAATGAATCGGACATTATATGGAGAGC 327 * * * *** * * ** *** ** * * * ** * * ** consensus_1205#0 CCCGGAAAGA-AGGGGAACAAAGGTTTAACCAGTTAACCGTTTTAATTCCAAGCGCACTT 472 consensus_1205#1 GTGGAAAAAACACTCGAGCGCTTTCCTGA--AGCACACCGAGCTGG--GCGAATGGATGC 383 * *** * * ** * * * ** **** * * * * * consensus_1205#0 AAACCAAAATTCCAATTGAAGGGCGGAAGGCCTTTAGAAGCATGGAAANTACCGGGACCA 532 consensus_1205#1 AGAATCTGTTCTCGCACAAGCATCCGGACGCGCCGCGCAACATTGGCTGGAGTCTGCACG 443 * * * * * * * * ** * * *** * * * * consensus_1205#0 NTTTACTTAN-TGGGACNGAAGCGGT--TGGAAAGAAANACAGCTCC--GAAGCCGCTTT 587 consensus_1205#1 GTGTGCAAGGCTTCCACGGGAGCTATAACGAAGAGGAGGCCACCTTCCTGATGCCGGCGG 503 * * * * ** * *** * * * ** * ** ** * ** **** consensus_1205#0 TCCCTTGGAAAGGCA-CAACCGGAGGCTTGGGCGAC-ACTGGGATGCCAGAAATCTGGGT 645 consensus_1205#1 AACGTGCCAGCATCGTCAATCCGAAGCTGATGCAGCTGCTGAGCGGCCCG-----TGGAG 558 * * * * *** * ** *** ** * *** * *** * *** consensus_1205#0 CCTACAGGCCACAAGCATTCCGGGAACGCNGCCCAGGCGGCAAACATTTGGGGCTTGGAA 705 consensus_1205#1 TCAGCGAGCGA-ACGCGGTACTGGTGGACTTCTTCACCAACACCAATCTGG----TCGAG 613 * * ** * * ** * * ** * * * ** ** *** * ** consensus_1205#0 GGTCTTGGCGACNGAGGTGGTTGGCAAAGGCTTCGCAAAC--AGGGGCAGAGCTATTACN 763 consensus_1205#1 CTGGCGGTTAGCACGAACCAGTACAAAACGCTACGCAATCCCGCGAACGAGGCCGTGGTG 673 * * * *** *** ***** * * * ** * consensus_1205#0 CCGAGANGCAGGGAGGGCGCANCGCGTATTCCGTGAATGCCCGGNCGGGAGACGGTGCCC 823 consensus_1205#1 CT-AGACATTCAGTGAGC---TTGTGAATCGAGTGAAT-CCAAAGCGACAGA--GTCTCG 726 * *** * * ** * * ** ****** ** ** *** ** * consensus_1205#0 AGCATCGGTCNACAGTCCGGA---AGCTTCGATGCAGGCCTGACC-TGGAGCGG-CGCCG 878 consensus_1205#1 GTAGTTTGTTGGACGTTCGAATAGAGCATC-ATGAACATTTCATCGTGGAATGGGCGCAA 785 * ** ** ** * *** ** *** * * * * **** ** *** consensus_1205#0 GTGCGAGGTACAGCGGGGCGAAC 901 consensus_1205#1 CTGATGGTCATTTTTGCCCT--- 805 ** * * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||