cluster # 1214

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Anopheles gambiae
cluster # 1214 cluster # 1214 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1214#0 length = 712 sequences # 1

consensus_1214#1 length = 531 sequences # 1

consensusID : consensus_1214#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 712
fasta sequence

                              [CCGGCGTGTGCGCGTGTGTGCGCTCATTGTGCGTATCGTCTTCTTGTGGCGTTTGCTTCCTTGCTTGCTTGCCTGCCTGGCTACTAGATCACGGACGGCTCTGGCGTGCGTTGTAAACATCGAGGTGTACGGCTCGCCAAACAAACCGTGCAATTGCCGTGCAAAGTGAAACTTCCGACCGACCAGCTGCTGCTGCTGCCCAAGTGTGAGTCACCTGGCAGTGAAAGGGAGGGAATTCAAACGCACACCCGTCTCTGTGAGGGGAGGGGGGAAAACAATCTCCACCCCACCGCGCAACCTGTGGTGGACGCGGGCACGGTTGGAGGTGACAGTGGCGCTAGCCAAAAGTGAAGACACAAAATAACCCACGAAAACGTTTTCACGAAAGTTGTGACACGTTTCTATAGTGTGTGTATGTATTTGCGTGTATTTAAGAGTGCTCACAAGCCCCACATCCTGTGTCTGTGAGAGTGTGTGTGAAAGTCAGTGTGTGATTTTGGGGGGTGAATGGTTGCGCGGAGTGCACAGGTGTTGCAGGAAGACGGTGAGAATCCGATCTAATCACTTTACCAAGGCCGCTTAGAAGTTTAACAACAGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACCTTTCCGTAAGGGGAAAGGCTACGAAGTTACTTACTCGCGCGAAGTTGCTAGCATGCACCAGTGCGGAGTTGCAGTAA]

[+] EMBL BM605464             [CCGGCGTGTGCGCGTGTGTGCGCTCATTGTGCGTATCGTCTTCTTGTGGCGTTTGCTTCCTTGCTTGCTTGCCTGCCTGGCTACTAGATCACGGACGGCTCTGGCGTGCGTTGTAAACATCGAGGTGTACGGCTCGCCAAACAAACCGTGCAATTGCCGTGCAAAGTGAAACTTCCGACCGACCAGCTGCTGCTGCTGCCCAAGTGTGAGTCACCTGGCAGTGAAAGGGAGGGAATTCAAACGCACACCCGTCTCTGTGAGGGGAGGGGGGAAAACAATCTCCACCCCACCGCGCAACCTGTGGTGGACGCGGGCACGGTTGGAGGTGACAGTGGCGCTAGCCAAAAGTGAAGACACAAAATAACCCACGAAAACGTTTTCACGAAAGTTGTGACACGTTTCTATAGTGTGTGTATGTATTTGCGTGTATTTAAGAGTGCTCACAAGCCCCACATCCTGTGTCTGTGAGAGTGTGTGTGAAAGTCAGTGTGTGATTTTGGGGGGTGAATGGTTGCGCGGAGTGCACAGGTGTTGCAGGAAGACGGTGAGAATCCGATCTAATCACTTTACCAAGGCCGCTTAGAAGTTTAACAACAGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACCTTTCCGTAAGGGGAAAGGCTACGAAGTTACTTACTCGCGCGAAGTTGCTAGCATGCACCAGTGCGGAGTTGCAGTAA]




>consensus_1214#0
CCGGCGTGTGCGCGTGTGTGCGCTCATTGTGCGTATCGTCTTCTTGTGGCGTTTGCTTCC
TTGCTTGCTTGCCTGCCTGGCTACTAGATCACGGACGGCTCTGGCGTGCGTTGTAAACAT
CGAGGTGTACGGCTCGCCAAACAAACCGTGCAATTGCCGTGCAAAGTGAAACTTCCGACC
GACCAGCTGCTGCTGCTGCCCAAGTGTGAGTCACCTGGCAGTGAAAGGGAGGGAATTCAA
ACGCACACCCGTCTCTGTGAGGGGAGGGGGGAAAACAATCTCCACCCCACCGCGCAACCT
GTGGTGGACGCGGGCACGGTTGGAGGTGACAGTGGCGCTAGCCAAAAGTGAAGACACAAA
ATAACCCACGAAAACGTTTTCACGAAAGTTGTGACACGTTTCTATAGTGTGTGTATGTAT
TTGCGTGTATTTAAGAGTGCTCACAAGCCCCACATCCTGTGTCTGTGAGAGTGTGTGTGA
AAGTCAGTGTGTGATTTTGGGGGGTGAATGGTTGCGCGGAGTGCACAGGTGTTGCAGGAA
GACGGTGAGAATCCGATCTAATCACTTTACCAAGGCCGCTTAGAAGTTTAACAACAGTGG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACCTTTCCGTAAGGGGAAAGGCTACGAA
GTTACTTACTCGCGCGAAGTTGCTAGCATGCACCAGTGCGGAGTTGCAGTAA

consensusID : consensus_1214#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 531
fasta sequence

                              [CCGCCCACGCGTCCGATCACGGACGGCTCTGGCGTGCGTTGTAAACATCGAGGTGTACGGCTCGCCAAACAAACCGTGCAATTGCCGTGCAAAGTGAAACTTCCGACCGACCAGCTGCTGCTGCTGCCCAAGTGTGAGTCACCTGGCAGTGAAAGGGAGGGAAATCAAACGCACACCCGTCTCTGTGAGGGGAGGGGGGAAAACAATCTCCACCCCACCGCGCAACCTGTGGTGGACGCGGGCACGGTTGGAGGTGACAGTGGCGCTAGCCAAAAGTGAAGACACAAAATAACCCACGAAAACGTTTTCACGAAAGTTGTGACACGTTTCTATAGTGTGTGTATGTATTTGCGTGTATTTAAGAGTGCTCACAAGCCCCACATCCTGTGTCTGTGAGAGTGTGTGTGAAAGTCAGTGTGTGATTTTGGGGGGTGAATGGTTGCGCGGAGTGCACAGGTGTTGCAGGAAGACGGTGAGAATCCGATCTAATCACTTTACCAAGGCCGCTTAGAAGTTTAACAACAGTGGTGT]

[+] EMBL BM575571             [CCGCCCACGCGTCCGATCACGGACGGCTCTGGCGTGCGTTGTAAACATCGAGGTGTACGGCTCGCCAAACAAACCGTGCAATTGCCGTGCAAAGTGAAACTTCCGACCGACCAGCTGCTGCTGCTGCCCAAGTGTGAGTCACCTGGCAGTGAAAGGGAGGGAAATCAAACGCACACCCGTCTCTGTGAGGGGAGGGGGGAAAACAATCTCCACCCCACCGCGCAACCTGTGGTGGACGCGGGCACGGTTGGAGGTGACAGTGGCGCTAGCCAAAAGTGAAGACACAAAATAACCCACGAAAACGTTTTCACGAAAGTTGTGACACGTTTCTATAGTGTGTGTATGTATTTGCGTGTATTTAAGAGTGCTCACAAGCCCCACATCCTGTGTCTGTGAGAGTGTGTGTGAAAGTCAGTGTGTGATTTTGGGGGGTGAATGGTTGCGCGGAGTGCACAGGTGTTGCAGGAAGACGGTGAGAATCCGATCTAATCACTTTACCAAGGCCGCTTAGAAGTTTAACAACAGTGGTGT]




>consensus_1214#1
CCGCCCACGCGTCCGATCACGGACGGCTCTGGCGTGCGTTGTAAACATCGAGGTGTACGG
CTCGCCAAACAAACCGTGCAATTGCCGTGCAAAGTGAAACTTCCGACCGACCAGCTGCTG
CTGCTGCCCAAGTGTGAGTCACCTGGCAGTGAAAGGGAGGGAAATCAAACGCACACCCGT
CTCTGTGAGGGGAGGGGGGAAAACAATCTCCACCCCACCGCGCAACCTGTGGTGGACGCG
GGCACGGTTGGAGGTGACAGTGGCGCTAGCCAAAAGTGAAGACACAAAATAACCCACGAA
AACGTTTTCACGAAAGTTGTGACACGTTTCTATAGTGTGTGTATGTATTTGCGTGTATTT
AAGAGTGCTCACAAGCCCCACATCCTGTGTCTGTGAGAGTGTGTGTGAAAGTCAGTGTGT
GATTTTGGGGGGTGAATGGTTGCGCGGAGTGCACAGGTGTTGCAGGAAGACGGTGAGAAT
CCGATCTAATCACTTTACCAAGGCCGCTTAGAAGTTTAACAACAGTGGTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1214#0      CCGGCGTGTGCGCGTGTGTGCGCTCATTGTGCGTATCGTCTTCTTGTGGCGTTTGCTTCC 60
consensus_1214#1      ------------------------------------------------------------
                                                                                  

consensus_1214#0      TTGCTTGCTTGCCTGCCTGGCTACTAGATCACGGACGGCTCTGGCGTGCGTTGTAAACAT 120
consensus_1214#1      ------------CCGCCCACGCGTCCGATCACGGACGGCTCTGGCGTGCGTTGTAAACAT 48
                                  * ***         **********************************

consensus_1214#0      CGAGGTGTACGGCTCGCCAAACAAACCGTGCAATTGCCGTGCAAAGTGAAACTTCCGACC 180
consensus_1214#1      CGAGGTGTACGGCTCGCCAAACAAACCGTGCAATTGCCGTGCAAAGTGAAACTTCCGACC 108
                      ************************************************************

consensus_1214#0      GACCAGCTGCTGCTGCTGCCCAAGTGTGAGTCACCTGGCAGTGAAAGGGAGGGAATTCAA 240
consensus_1214#1      GACCAGCTGCTGCTGCTGCCCAAGTGTGAGTCACCTGGCAGTGAAAGGGAGGGAAATCAA 168
                      ******************************************************* ****

consensus_1214#0      ACGCACACCCGTCTCTGTGAGGGGAGGGGGGAAAACAATCTCCACCCCACCGCGCAACCT 300
consensus_1214#1      ACGCACACCCGTCTCTGTGAGGGGAGGGGGGAAAACAATCTCCACCCCACCGCGCAACCT 228
                      ************************************************************

consensus_1214#0      GTGGTGGACGCGGGCACGGTTGGAGGTGACAGTGGCGCTAGCCAAAAGTGAAGACACAAA 360
consensus_1214#1      GTGGTGGACGCGGGCACGGTTGGAGGTGACAGTGGCGCTAGCCAAAAGTGAAGACACAAA 288
                      ************************************************************

consensus_1214#0      ATAACCCACGAAAACGTTTTCACGAAAGTTGTGACACGTTTCTATAGTGTGTGTATGTAT 420
consensus_1214#1      ATAACCCACGAAAACGTTTTCACGAAAGTTGTGACACGTTTCTATAGTGTGTGTATGTAT 348
                      ************************************************************

consensus_1214#0      TTGCGTGTATTTAAGAGTGCTCACAAGCCCCACATCCTGTGTCTGTGAGAGTGTGTGTGA 480
consensus_1214#1      TTGCGTGTATTTAAGAGTGCTCACAAGCCCCACATCCTGTGTCTGTGAGAGTGTGTGTGA 408
                      ************************************************************

consensus_1214#0      AAGTCAGTGTGTGATTTTGGGGGGTGAATGGTTGCGCGGAGTGCACAGGTGTTGCAGGAA 540
consensus_1214#1      AAGTCAGTGTGTGATTTTGGGGGGTGAATGGTTGCGCGGAGTGCACAGGTGTTGCAGGAA 468
                      ************************************************************

consensus_1214#0      GACGGTGAGAATCCGATCTAATCACTTTACCAAGGCCGCTTAGAAGTTTAACAACAGTGG 600
consensus_1214#1      GACGGTGAGAATCCGATCTAATCACTTTACCAAGGCCGCTTAGAAGTTTAACAACAGTGG 528
                      ************************************************************

consensus_1214#0      TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACCTTTCCGTAAGGGGAAAGGCTACGAA 660
consensus_1214#1      TGT--------------------------------------------------------- 531
                      ***                                                         

consensus_1214#0      GTTACTTACTCGCGCGAAGTTGCTAGCATGCACCAGTGCGGAGTTGCAGTAA 712
consensus_1214#1      ----------------------------------------------------