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Anopheles gambiae
cluster # 123 cluster # 123       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_123#0 length = 985 sequences # 1  
consensus_123#1 length = 681 sequences # 1  

consensusID : consensus_123#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 985
fasta sequence
                              [GCAAGAATCGGCACGAGGCGTCGCGTGTGTAGATGCAATCAAAGTGTCGTCCGCCAGCGGTACGATGGTGACGGTCGCGTTGGAAAGTAGTGTTGTTACCGCTGCCGGTTTGGCGGCACTGTTGCTAACGCTGGCGGCGGTGATCGGTACGAGCGGGAACCCACTCGAATGCCCCCGGCCGGCCGCGTCTGGCAGCGCCCCATCCGGTTGGCAACCGCGAACGCCCGAGCAAACGCTGTACGCGTACGTGCGCTGCCTGAACGACTCGTCCGCCAGCATCGAGATGAAGATCCGCTGGGTCATGTGGCAGCCGGACCAGTCGCCCGAGAGCCAGTGCTACGTGAAGTGTGTCAGCGAGGATCTGCGGCTGTACGATCCGGCCCGGCGGCAGTTTGTGCCGGAGCGGTTCGAGCAGCAGGCCCGCGCGTTCCACGAGGATCCCGAGGCGGACGACATCCGGACGCTGTACACGGACGCGCACCGGCTGCTGGCGGGCGAGCTGCCCGACAGCGACTGCTCGACCGTGTTCGCCAAGTACGCACCGTTCTACGCGGTGCACCAGGAGCACATACTGGACATCTTCCATGGGGATCTGCGCAAAATCTTGGTCACGTACCAGCGGGCTCGGGCCGCGCGTCAAACAGATCGGGCAAAGCTTCGTCGACTACTGCGAGAAGCGGTACGGGTTTTGCGTGGGCCGAGGAGGAGCAAGCGGGGCCTTGGCCCGGAATCAGACCGCGGTTGGAGTGTATTCCCTTTTCNGGCAGGGAGGGNTTCCCCGGGCTTGGGTNAATCACACCGCGGAGGGAAAGCGGGGGCNNAAATTGGTNGCAACACTTGTTCCGGGCNTGGACGNATTNTGGTACAGCGCGCGAAAAATTTTCCGGANTAGGGGGGTTCCANGGAGTGTATTGGAGACAGGCGAGACAGCGAAACCTGGACAGAGCCAAGTTGGCCCCACGGGGGGNCGGGAAACGACNGAACC]

[+] EMBL BX467793             [GCAAGAATCGGCACGAGGCGTCGCGTGTGTAGATGCAATCAAAGTGTCGTCCGCCAGCGGTACGATGGTGACGGTCGCGTTGGAAAGTAGTGTTGTTACCGCTGCCGGTTTGGCGGCACTGTTGCTAACGCTGGCGGCGGTGATCGGTACGAGCGGGAACCCACTCGAATGCCCCCGGCCGGCCGCGTCTGGCAGCGCCCCATCCGGTTGGCAACCGCGAACGCCCGAGCAAACGCTGTACGCGTACGTGCGCTGCCTGAACGACTCGTCCGCCAGCATCGAGATGAAGATCCGCTGGGTCATGTGGCAGCCGGACCAGTCGCCCGAGAGCCAGTGCTACGTGAAGTGTGTCAGCGAGGATCTGCGGCTGTACGATCCGGCCCGGCGGCAGTTTGTGCCGGAGCGGTTCGAGCAGCAGGCCCGCGCGTTCCACGAGGATCCCGAGGCGGACGACATCCGGACGCTGTACACGGACGCGCACCGGCTGCTGGCGGGCGAGCTGCCCGACAGCGACTGCTCGACCGTGTTCGCCAAGTACGCACCGTTCTACGCGGTGCACCAGGAGCACATACTGGACATCTTCCATGGGGATCTGCGCAAAATCTTGGTCACGTACCAGCGGGCTCGGGCCGCGCGTCAAACAGATCGGGCAAAGCTTCGTCGACTACTGCGAGAAGCGGTACGGGTTTTGCGTGGGCCGAGGAGGAGCAAGCGGGGCCTTGGCCCGGAATCAGACCGCGGTTGGAGTGTATTCCCTTTTCNGGCAGGGAGGGNTTCCCCGGGCTTGGGTNAATCACACCGCGGAGGGAAAGCGGGGGCNNAAATTGGTNGCAACACTTGTTCCGGGCNTGGACGNATTNTGGTACAGCGCGCGAAAAATTTTCCGGANTAGGGGGGTTCCANGGAGTGTATTGGAGACAGGCGAGACAGCGAAACCTGGACAGAGCCAAGTTGGCCCCACGGGGGGNCGGGAAACGACNGAACC]


>consensus_123#0 GCAAGAATCGGCACGAGGCGTCGCGTGTGTAGATGCAATCAAAGTGTCGTCCGCCAGCGG TACGATGGTGACGGTCGCGTTGGAAAGTAGTGTTGTTACCGCTGCCGGTTTGGCGGCACT GTTGCTAACGCTGGCGGCGGTGATCGGTACGAGCGGGAACCCACTCGAATGCCCCCGGCC GGCCGCGTCTGGCAGCGCCCCATCCGGTTGGCAACCGCGAACGCCCGAGCAAACGCTGTA CGCGTACGTGCGCTGCCTGAACGACTCGTCCGCCAGCATCGAGATGAAGATCCGCTGGGT CATGTGGCAGCCGGACCAGTCGCCCGAGAGCCAGTGCTACGTGAAGTGTGTCAGCGAGGA TCTGCGGCTGTACGATCCGGCCCGGCGGCAGTTTGTGCCGGAGCGGTTCGAGCAGCAGGC CCGCGCGTTCCACGAGGATCCCGAGGCGGACGACATCCGGACGCTGTACACGGACGCGCA CCGGCTGCTGGCGGGCGAGCTGCCCGACAGCGACTGCTCGACCGTGTTCGCCAAGTACGC ACCGTTCTACGCGGTGCACCAGGAGCACATACTGGACATCTTCCATGGGGATCTGCGCAA AATCTTGGTCACGTACCAGCGGGCTCGGGCCGCGCGTCAAACAGATCGGGCAAAGCTTCG TCGACTACTGCGAGAAGCGGTACGGGTTTTGCGTGGGCCGAGGAGGAGCAAGCGGGGCCT TGGCCCGGAATCAGACCGCGGTTGGAGTGTATTCCCTTTTCNGGCAGGGAGGGNTTCCCC GGGCTTGGGTNAATCACACCGCGGAGGGAAAGCGGGGGCNNAAATTGGTNGCAACACTTG TTCCGGGCNTGGACGNATTNTGGTACAGCGCGCGAAAAATTTTCCGGANTAGGGGGGTTC CANGGAGTGTATTGGAGACAGGCGAGACAGCGAAACCTGGACAGAGCCAAGTTGGCCCCA CGGGGGGNCGGGAAACGACNGAACC



consensusID : consensus_123#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 681
fasta sequence
                              [CCGCGGACGCGTGGGGTGCGGCATCCACGAGACCACCTACAACTCGATCATGAAGTGCGATGTCGACATCCGTAAGGATCTGTACGCCAACACGGTCCTGTCCGGCGGTACCACCATGTACCCGGGCATCGCCGACCGCATGCAGAAGGAGATCACGGCCCTGGCACCGTCGACCATGAAGATCAAGATCATCGCACCGCCGGAGCGCAAGTACTCCGTCTGGATCGGTGGCTCCATCCTGGCCTCGCTGTCCACCTTCCAGCAGATGTGGATCTCCAAGCAGGAGTACGACGAGTCCGGCCCATCCATTGTGCACCGAAAGTGCTTCTAAGTTAACGCTTCTAATGGTCCCAAATCGTTGCCGCCGTCGGTCCTGGTTTCGTCGAGCGTAGCCTGGGGTAAAAGGAGAAACAACACACCACATCTCTCGGAGGGATTGCCTCCGCAATCATCACCACCACCACCACCACCCATAGCAGTGTAGAGGGGCAACCCATGATGCGCAGTGGATAACATGCAGGTGGCCGGCGCGTCACTGTGCGTCGTAAGAAGTTGAACTATATGTTAACAGAAGAAGATGACGTGTTGTGCCCTCATGTACTTTGTCGTCACATCAGCCCCCCTGCTTAAGCTCAGCGACGCGGTAGCGATATTATTATATTCTTTTTCACAATACAAACA]

[+] EMBL BM643383             [CCGCGGACGCGTGGGGTGCGGCATCCACGAGACCACCTACAACTCGATCATGAAGTGCGATGTCGACATCCGTAAGGATCTGTACGCCAACACGGTCCTGTCCGGCGGTACCACCATGTACCCGGGCATCGCCGACCGCATGCAGAAGGAGATCACGGCCCTGGCACCGTCGACCATGAAGATCAAGATCATCGCACCGCCGGAGCGCAAGTACTCCGTCTGGATCGGTGGCTCCATCCTGGCCTCGCTGTCCACCTTCCAGCAGATGTGGATCTCCAAGCAGGAGTACGACGAGTCCGGCCCATCCATTGTGCACCGAAAGTGCTTCTAAGTTAACGCTTCTAATGGTCCCAAATCGTTGCCGCCGTCGGTCCTGGTTTCGTCGAGCGTAGCCTGGGGTAAAAGGAGAAACAACACACCACATCTCTCGGAGGGATTGCCTCCGCAATCATCACCACCACCACCACCACCCATAGCAGTGTAGAGGGGCAACCCATGATGCGCAGTGGATAACATGCAGGTGGCCGGCGCGTCACTGTGCGTCGTAAGAAGTTGAACTATATGTTAACAGAAGAAGATGACGTGTTGTGCCCTCATGTACTTTGTCGTCACATCAGCCCCCCTGCTTAAGCTCAGCGACGCGGTAGCGATATTATTATATTCTTTTTCACAATACAAACA]


>consensus_123#1 CCGCGGACGCGTGGGGTGCGGCATCCACGAGACCACCTACAACTCGATCATGAAGTGCGA TGTCGACATCCGTAAGGATCTGTACGCCAACACGGTCCTGTCCGGCGGTACCACCATGTA CCCGGGCATCGCCGACCGCATGCAGAAGGAGATCACGGCCCTGGCACCGTCGACCATGAA GATCAAGATCATCGCACCGCCGGAGCGCAAGTACTCCGTCTGGATCGGTGGCTCCATCCT GGCCTCGCTGTCCACCTTCCAGCAGATGTGGATCTCCAAGCAGGAGTACGACGAGTCCGG CCCATCCATTGTGCACCGAAAGTGCTTCTAAGTTAACGCTTCTAATGGTCCCAAATCGTT GCCGCCGTCGGTCCTGGTTTCGTCGAGCGTAGCCTGGGGTAAAAGGAGAAACAACACACC ACATCTCTCGGAGGGATTGCCTCCGCAATCATCACCACCACCACCACCACCCATAGCAGT GTAGAGGGGCAACCCATGATGCGCAGTGGATAACATGCAGGTGGCCGGCGCGTCACTGTG CGTCGTAAGAAGTTGAACTATATGTTAACAGAAGAAGATGACGTGTTGTGCCCTCATGTA CTTTGTCGTCACATCAGCCCCCCTGCTTAAGCTCAGCGACGCGGTAGCGATATTATTATA TTCTTTTTCACAATACAAACA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_123#0      GCAAGAATCGGCACGAGGCGTCGCGTGTGTAGATGCAATCAAAGTGTCGTCCGCCAGCGG 60
consensus_123#1      ------------------------------------------------------------
                                                                                 

consensus_123#0      TACGATGGTGACGGTCGCGTTGGAAAGTAGTGTTGTTACCGCTGCCGGTTTGGCGGCACT 120
consensus_123#1      ------------------------------------------------------------
                                                                                 

consensus_123#0      GTTGCTAACGCTGGCGGCGGTGATCGGTACGAGCGGGAACCCACTCGAATGCCCCCGGCC 180
consensus_123#1      ------------------------------------------------------------
                                                                                 

consensus_123#0      GGCCGCGTCTGGCAGCGCCCCATCCGGTTGGCAACCGCGAACGCCCGAGCAAACGCTGTA 240
consensus_123#1      ------------------------------------------------------------
                                                                                 

consensus_123#0      CGCGTACGTGCGCTGCCTGAACGACTCGTCCGCCAGCATCGAGATGAAGATCCGCTGGGT 300
consensus_123#1      -------------------------------------------CCGCGGACGCGTGGGGT 17
                                                                  *  **  **  ****

consensus_123#0      CATGTGGCAGCCGGACCAGTCGCCCGAGAGCCAGTGCTACGTGAAGT--GTGTCAGCGAG 358
consensus_123#1      GCGGCATCCACGAGACCACCTACAACTCGATCA-TGAAGTGCGATGTCGACATCCGTAAG 76
                        *   *  *  *****    *        ** **    * ** **     ** *  **

consensus_123#0      GATCTG--CGGCTGTACGATCCGGCCCGGCGG---CAGTTTGTGCCGGAGCGGTTCGAGC 413
consensus_123#1      GATCTGTACGCCAACACGGTCCTGTCCGGCGGTACCACCATGTACCCGGGCATCGCCGAC 136
                     ******  ** *   *** *** * *******   **   *** ** * **    *   *

consensus_123#0      AGCAGGCCCGCGCGTTCCACGAGGATCCCGAGGCGGACGACATCCGGACGCTGTACACGG 473
consensus_123#1      CGCATGCAGAAGGAGATCACG---GCCCTGGCACCGTCGAC--CATGAAGATCAAGATCA 191
                      *** **    *     ****     ** *   * * ****  *  ** * *  * *   

consensus_123#0      ACGCGCACCGGCTGCTGGCGGGCGAGCTGCCCGACAGCGACTGCTCGACCGTG--TTCGC 531
consensus_123#1      TCG--CACCGCCGGAGCGCAAGTACTCCGTCTGG-ATCGGTGGCTCCATCCTGGCCTCGC 248
                      **  ***** * *   **  *    * * * *  * **   **** * * **   ****

consensus_123#0      CAAGTACGCACCGTTCTACGCGGTGCACCAGGAGCACATACTGGACATCTTCCATGGGGA 591
consensus_123#1      TGTCCACCTTCCAGCAGATGTGGATCTCCAAGCAGGAGTAC--GAC-----------GAG 295
                          **   **     * * **  * *** *      ***  ***           *  

consensus_123#0      TCTGCGCAAAATCTTGGTCACGTACCAGCGGGCTCGGGCCGCGCGTCAAACAGATCGGGC 651
consensus_123#1      TCCGGCCCATCCATTGTGCACCGAAAGTGCTTCTAAGTTAACGCTTCTAATGGTCC---C 352
                     ** *  * *    ***  ***  *        **  *    *** ** **  *  *   *

consensus_123#0      AAAGCTTCGTCGACTACTGCGAGAAGCGGTACGGGTTTTGCGTGGGCCGAGGAGGAGCAA 711
consensus_123#1      AAATCGTTGCCGCCGTCGGTCCTGGTTTCGTCGAGCGTAGCCTGGGGTAAAAGGAGAAAC 412
                     *** * * * ** *  * *            ** *  * ** ****   *   *    * 

consensus_123#0      GCGGGGCCTTGGCCCGGAATCAGACCGCGGTTGGAGTGTATTCCCTTTTCNGGCAGGGAG 771
consensus_123#1      AACACACCACATCTCTCGGAGGGATTGCCTCCGCAAT-CATCACCACCACCACCACCACC 471
                           **    * *       **  **    * * *  **  **    *   **     

consensus_123#0      GGNTTCCCCGGGCTTGGGTNAATCACACCGCGGAGGGAAAGCGGGGGCNNAAATTGGTNG 831
consensus_123#1      CATAGCAGTGTAGAGGGGCAACCCATGATGCGCAGTGGATA-ACATGCAGGTGGCCGGCG 530
                          *   *     ***  *  **    *** ** * *       **        *  *

consensus_123#0      CAACACT-TGTTCCGGGCNTGGACGNATTNTGGTACAGCGCGCGAAAAATTTTCCGGANT 890
consensus_123#1      CGTCACTGTGCGTCGTAAGAAGTTGAACTATATGTTAACAGAAGAAGA------TGACGT 584
                     *  **** **   **      *  * * * *     * *    *** *       *   *

consensus_123#0      AGGGGGGTTCCANGGAGTGTATTGG-AGACAGGCGAGACAGCGAAACCTGGACAGAGCCA 949
consensus_123#1      GTTGTGCCCTCATGTACTTTGTCGTCACATCAGCCCCCCTGCTTAAGCTCAGCGACGCGG 644
                        * *    ** * * * * * *  * *   **    * **  ** **   *   **  

consensus_123#0      AGTTGGCCCCACGGGGGGNCGGGAAACGACNGAACC- 985
consensus_123#1      TAGCGATATTATTATATTCTTTTTCACAATACAAACA 681
                         *     *              ** *   ** * 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)