These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_123#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 985 fasta sequence [GCAAGAATCGGCACGAGGCGTCGCGTGTGTAGATGCAATCAAAGTGTCGTCCGCCAGCGGTACGATGGTGACGGTCGCGTTGGAAAGTAGTGTTGTTACCGCTGCCGGTTTGGCGGCACTGTTGCTAACGCTGGCGGCGGTGATCGGTACGAGCGGGAACCCACTCGAATGCCCCCGGCCGGCCGCGTCTGGCAGCGCCCCATCCGGTTGGCAACCGCGAACGCCCGAGCAAACGCTGTACGCGTACGTGCGCTGCCTGAACGACTCGTCCGCCAGCATCGAGATGAAGATCCGCTGGGTCATGTGGCAGCCGGACCAGTCGCCCGAGAGCCAGTGCTACGTGAAGTGTGTCAGCGAGGATCTGCGGCTGTACGATCCGGCCCGGCGGCAGTTTGTGCCGGAGCGGTTCGAGCAGCAGGCCCGCGCGTTCCACGAGGATCCCGAGGCGGACGACATCCGGACGCTGTACACGGACGCGCACCGGCTGCTGGCGGGCGAGCTGCCCGACAGCGACTGCTCGACCGTGTTCGCCAAGTACGCACCGTTCTACGCGGTGCACCAGGAGCACATACTGGACATCTTCCATGGGGATCTGCGCAAAATCTTGGTCACGTACCAGCGGGCTCGGGCCGCGCGTCAAACAGATCGGGCAAAGCTTCGTCGACTACTGCGAGAAGCGGTACGGGTTTTGCGTGGGCCGAGGAGGAGCAAGCGGGGCCTTGGCCCGGAATCAGACCGCGGTTGGAGTGTATTCCCTTTTCNGGCAGGGAGGGNTTCCCCGGGCTTGGGTNAATCACACCGCGGAGGGAAAGCGGGGGCNNAAATTGGTNGCAACACTTGTTCCGGGCNTGGACGNATTNTGGTACAGCGCGCGAAAAATTTTCCGGANTAGGGGGGTTCCANGGAGTGTATTGGAGACAGGCGAGACAGCGAAACCTGGACAGAGCCAAGTTGGCCCCACGGGGGGNCGGGAAACGACNGAACC] [+] EMBL BX467793 [GCAAGAATCGGCACGAGGCGTCGCGTGTGTAGATGCAATCAAAGTGTCGTCCGCCAGCGGTACGATGGTGACGGTCGCGTTGGAAAGTAGTGTTGTTACCGCTGCCGGTTTGGCGGCACTGTTGCTAACGCTGGCGGCGGTGATCGGTACGAGCGGGAACCCACTCGAATGCCCCCGGCCGGCCGCGTCTGGCAGCGCCCCATCCGGTTGGCAACCGCGAACGCCCGAGCAAACGCTGTACGCGTACGTGCGCTGCCTGAACGACTCGTCCGCCAGCATCGAGATGAAGATCCGCTGGGTCATGTGGCAGCCGGACCAGTCGCCCGAGAGCCAGTGCTACGTGAAGTGTGTCAGCGAGGATCTGCGGCTGTACGATCCGGCCCGGCGGCAGTTTGTGCCGGAGCGGTTCGAGCAGCAGGCCCGCGCGTTCCACGAGGATCCCGAGGCGGACGACATCCGGACGCTGTACACGGACGCGCACCGGCTGCTGGCGGGCGAGCTGCCCGACAGCGACTGCTCGACCGTGTTCGCCAAGTACGCACCGTTCTACGCGGTGCACCAGGAGCACATACTGGACATCTTCCATGGGGATCTGCGCAAAATCTTGGTCACGTACCAGCGGGCTCGGGCCGCGCGTCAAACAGATCGGGCAAAGCTTCGTCGACTACTGCGAGAAGCGGTACGGGTTTTGCGTGGGCCGAGGAGGAGCAAGCGGGGCCTTGGCCCGGAATCAGACCGCGGTTGGAGTGTATTCCCTTTTCNGGCAGGGAGGGNTTCCCCGGGCTTGGGTNAATCACACCGCGGAGGGAAAGCGGGGGCNNAAATTGGTNGCAACACTTGTTCCGGGCNTGGACGNATTNTGGTACAGCGCGCGAAAAATTTTCCGGANTAGGGGGGTTCCANGGAGTGTATTGGAGACAGGCGAGACAGCGAAACCTGGACAGAGCCAAGTTGGCCCCACGGGGGGNCGGGAAACGACNGAACC] consensusID : consensus_123#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [CCGCGGACGCGTGGGGTGCGGCATCCACGAGACCACCTACAACTCGATCATGAAGTGCGATGTCGACATCCGTAAGGATCTGTACGCCAACACGGTCCTGTCCGGCGGTACCACCATGTACCCGGGCATCGCCGACCGCATGCAGAAGGAGATCACGGCCCTGGCACCGTCGACCATGAAGATCAAGATCATCGCACCGCCGGAGCGCAAGTACTCCGTCTGGATCGGTGGCTCCATCCTGGCCTCGCTGTCCACCTTCCAGCAGATGTGGATCTCCAAGCAGGAGTACGACGAGTCCGGCCCATCCATTGTGCACCGAAAGTGCTTCTAAGTTAACGCTTCTAATGGTCCCAAATCGTTGCCGCCGTCGGTCCTGGTTTCGTCGAGCGTAGCCTGGGGTAAAAGGAGAAACAACACACCACATCTCTCGGAGGGATTGCCTCCGCAATCATCACCACCACCACCACCACCCATAGCAGTGTAGAGGGGCAACCCATGATGCGCAGTGGATAACATGCAGGTGGCCGGCGCGTCACTGTGCGTCGTAAGAAGTTGAACTATATGTTAACAGAAGAAGATGACGTGTTGTGCCCTCATGTACTTTGTCGTCACATCAGCCCCCCTGCTTAAGCTCAGCGACGCGGTAGCGATATTATTATATTCTTTTTCACAATACAAACA] [+] EMBL BM643383 [CCGCGGACGCGTGGGGTGCGGCATCCACGAGACCACCTACAACTCGATCATGAAGTGCGATGTCGACATCCGTAAGGATCTGTACGCCAACACGGTCCTGTCCGGCGGTACCACCATGTACCCGGGCATCGCCGACCGCATGCAGAAGGAGATCACGGCCCTGGCACCGTCGACCATGAAGATCAAGATCATCGCACCGCCGGAGCGCAAGTACTCCGTCTGGATCGGTGGCTCCATCCTGGCCTCGCTGTCCACCTTCCAGCAGATGTGGATCTCCAAGCAGGAGTACGACGAGTCCGGCCCATCCATTGTGCACCGAAAGTGCTTCTAAGTTAACGCTTCTAATGGTCCCAAATCGTTGCCGCCGTCGGTCCTGGTTTCGTCGAGCGTAGCCTGGGGTAAAAGGAGAAACAACACACCACATCTCTCGGAGGGATTGCCTCCGCAATCATCACCACCACCACCACCACCCATAGCAGTGTAGAGGGGCAACCCATGATGCGCAGTGGATAACATGCAGGTGGCCGGCGCGTCACTGTGCGTCGTAAGAAGTTGAACTATATGTTAACAGAAGAAGATGACGTGTTGTGCCCTCATGTACTTTGTCGTCACATCAGCCCCCCTGCTTAAGCTCAGCGACGCGGTAGCGATATTATTATATTCTTTTTCACAATACAAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_123#0 GCAAGAATCGGCACGAGGCGTCGCGTGTGTAGATGCAATCAAAGTGTCGTCCGCCAGCGG 60 consensus_123#1 ------------------------------------------------------------ consensus_123#0 TACGATGGTGACGGTCGCGTTGGAAAGTAGTGTTGTTACCGCTGCCGGTTTGGCGGCACT 120 consensus_123#1 ------------------------------------------------------------ consensus_123#0 GTTGCTAACGCTGGCGGCGGTGATCGGTACGAGCGGGAACCCACTCGAATGCCCCCGGCC 180 consensus_123#1 ------------------------------------------------------------ consensus_123#0 GGCCGCGTCTGGCAGCGCCCCATCCGGTTGGCAACCGCGAACGCCCGAGCAAACGCTGTA 240 consensus_123#1 ------------------------------------------------------------ consensus_123#0 CGCGTACGTGCGCTGCCTGAACGACTCGTCCGCCAGCATCGAGATGAAGATCCGCTGGGT 300 consensus_123#1 -------------------------------------------CCGCGGACGCGTGGGGT 17 * ** ** **** consensus_123#0 CATGTGGCAGCCGGACCAGTCGCCCGAGAGCCAGTGCTACGTGAAGT--GTGTCAGCGAG 358 consensus_123#1 GCGGCATCCACGAGACCACCTACAACTCGATCA-TGAAGTGCGATGTCGACATCCGTAAG 76 * * * ***** * ** ** * ** ** ** * ** consensus_123#0 GATCTG--CGGCTGTACGATCCGGCCCGGCGG---CAGTTTGTGCCGGAGCGGTTCGAGC 413 consensus_123#1 GATCTGTACGCCAACACGGTCCTGTCCGGCGGTACCACCATGTACCCGGGCATCGCCGAC 136 ****** ** * *** *** * ******* ** *** ** * ** * * consensus_123#0 AGCAGGCCCGCGCGTTCCACGAGGATCCCGAGGCGGACGACATCCGGACGCTGTACACGG 473 consensus_123#1 CGCATGCAGAAGGAGATCACG---GCCCTGGCACCGTCGAC--CATGAAGATCAAGATCA 191 *** ** * **** ** * * * **** * ** * * * * consensus_123#0 ACGCGCACCGGCTGCTGGCGGGCGAGCTGCCCGACAGCGACTGCTCGACCGTG--TTCGC 531 consensus_123#1 TCG--CACCGCCGGAGCGCAAGTACTCCGTCTGG-ATCGGTGGCTCCATCCTGGCCTCGC 248 ** ***** * * ** * * * * * * ** **** * * ** **** consensus_123#0 CAAGTACGCACCGTTCTACGCGGTGCACCAGGAGCACATACTGGACATCTTCCATGGGGA 591 consensus_123#1 TGTCCACCTTCCAGCAGATGTGGATCTCCAAGCAGGAGTAC--GAC-----------GAG 295 ** ** * * ** * *** * *** *** * consensus_123#0 TCTGCGCAAAATCTTGGTCACGTACCAGCGGGCTCGGGCCGCGCGTCAAACAGATCGGGC 651 consensus_123#1 TCCGGCCCATCCATTGTGCACCGAAAGTGCTTCTAAGTTAACGCTTCTAATGGTCC---C 352 ** * * * *** *** * ** * *** ** ** * * * consensus_123#0 AAAGCTTCGTCGACTACTGCGAGAAGCGGTACGGGTTTTGCGTGGGCCGAGGAGGAGCAA 711 consensus_123#1 AAATCGTTGCCGCCGTCGGTCCTGGTTTCGTCGAGCGTAGCCTGGGGTAAAAGGAGAAAC 412 *** * * * ** * * * ** * * ** **** * * * consensus_123#0 GCGGGGCCTTGGCCCGGAATCAGACCGCGGTTGGAGTGTATTCCCTTTTCNGGCAGGGAG 771 consensus_123#1 AACACACCACATCTCTCGGAGGGATTGCCTCCGCAAT-CATCACCACCACCACCACCACC 471 ** * * ** ** * * * ** ** * ** consensus_123#0 GGNTTCCCCGGGCTTGGGTNAATCACACCGCGGAGGGAAAGCGGGGGCNNAAATTGGTNG 831 consensus_123#1 CATAGCAGTGTAGAGGGGCAACCCATGATGCGCAGTGGATA-ACATGCAGGTGGCCGGCG 530 * * *** * ** *** ** * * ** * * consensus_123#0 CAACACT-TGTTCCGGGCNTGGACGNATTNTGGTACAGCGCGCGAAAAATTTTCCGGANT 890 consensus_123#1 CGTCACTGTGCGTCGTAAGAAGTTGAACTATATGTTAACAGAAGAAGA------TGACGT 584 * **** ** ** * * * * * * * *** * * * consensus_123#0 AGGGGGGTTCCANGGAGTGTATTGG-AGACAGGCGAGACAGCGAAACCTGGACAGAGCCA 949 consensus_123#1 GTTGTGCCCTCATGTACTTTGTCGTCACATCAGCCCCCCTGCTTAAGCTCAGCGACGCGG 644 * * ** * * * * * * * * ** * ** ** ** * ** consensus_123#0 AGTTGGCCCCACGGGGGGNCGGGAAACGACNGAACC- 985 consensus_123#1 TAGCGATATTATTATATTCTTTTTCACAATACAAACA 681 * * ** * ** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||