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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1230#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence
[CCGGTTTGTTTTAGTGTCGACAACGTACGGATTCGAGCCATAACGTAAATTTCCGCAATAAAATATGTTCTCAATGTCATCGAAATTCTCACGAGGGACAAGGTGGTAGATCAGGCAAAGAGCTTGCTTTTCAAGCCTTTTAATTGTTTTCTTGTGCGTTTCTTTTTTTTATCTACATTTATTCATACCAACTCTATTCTTTAGAATAAAACATACCATTAGCGAATCGAAACTGCCGTTCAATTTAGATATATTTCCACGCTCGGTGTATATAAATTTACATTTCTATATTTTTGTAACAAAGCAGCAGTAATAAAAAAAGAAAGGAAACAGGGCAAGTTACACTTAAAGAGGTAAGCGAACTAAGAGCGGATGACCCGAAACCCTCATAATACAGATTTGAAGGTGGTAGGGCTAAAGTTTCAGGGCAGCAACAAAAAAACAAGAAAAAATCACACACAATGCTATGTGCACCATACAAATCAGTTTTAGAAAACTATGAAAACAGCTTGTGTAACGCCTTTTGCCTAGCGTGTACGTAAACCGATCCCTTGCTTTCCCTTAAAAAAAAAACAGTGATAGCTACCGCCTCAATGACTAAATATAGTAGTAGCGGTGCTGAACATACGAAAGAGATAATGACAAAACGATAGATATATTATTTTTGCTATATCACAGGATTGTGTTTGCTTTAGGAACTATTCTAAATT]
[+] EMBL BM637290 [CCGGTTTGTTTTAGTGTCGACAACGTACGGATTCGAGCCATAACGTAAATTTCCGCAATAAAATATGTTCTCAATGTCATCGAAATTCTCACGAGGGACAAGGTGGTAGATCAGGCAAAGAGCTTGCTTTTCAAGCCTTTTAATTGTTTTCTTGTGCGTTTCTTTTTTTTATCTACATTTATTCATACCAACTCTATTCTTTAGAATAAAACATACCATTAGCGAATCGAAACTGCCGTTCAATTTAGATATATTTCCACGCTCGGTGTATATAAATTTACATTTCTATATTTTTGTAACAAAGCAGCAGTAATAAAAAAAGAAAGGAAACAGGGCAAGTTACACTTAAAGAGGTAAGCGAACTAAGAGCGGATGACCCGAAACCCTCATAATACAGATTTGAAGGTGGTAGGGCTAAAGTTTCAGGGCAGCAACAAAAAAACAAGAAAAAATCACACACAATGCTATGTGCACCATACAAATCAGTTTTAGAAAACTATGAAAACAGCTTGTGTAACGCCTTTTGCCTAGCGTGTACGTAAACCGATCCCTTGCTTTCCCTTAAAAAAAAAACAGTGATAGCTACCGCCTCAATGACTAAATATAGTAGTAGCGGTGCTGAACATACGAAAGAGATAATGACAAAACGATAGATATATTATTTTTGCTATATCACAGGATTGTGTTTGCTTTAGGAACTATTCTAAATT]
consensusID : consensus_1230#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence
[CCGCGCCCTGTAGATCCTACAACAAAGAGTTTTGAACATTATTGGATGCATTTTGTAAAAGTGTGTCGTAGATCTTCTGTATGCGAGAGTTGGCTGCTGTGCGGTCGATATGCGTGAAACTAGATGATGGATCGCTTAGTTTACATTTGTAGCATTGCACGATCATTTCCATTAATGTTCAATGATTACGGCTGAACTGGCGGCAGTTTGTAATGTTGTTATACGCGTAATTGGCGCAGATTGACTCTGCCGACAGGTAAATGTATCGCAAAAACGAGGATCGTGGAAGCACTAAGTTATCTACCGAAAGAAGGTAATGCGAACCACCTTGGCTTGGCTTCACAAGTGCTGCATGCTTGAGCATGAAATAGGCATGCTTATTTCTTGGGAAACTAAACTGTGTGATTCACAAATGTGTATACTCTAAGGAAGTTTTACAGTTTTGTTTGCTTATACTAAAAGCAAAATGGGAGTGAAATTAATTTCAGTTTTGTATTGCTATTACACCAATGTTTCAGTTTGTATTAGTGTCGACAACGTACGGATTCGAGCCGTAACGTAAATTTCCGCAATAAAATATGTTCTCAATGTCATCGAAATTCTCACGAGGGGACAAGGGGGGTAGATCAGGCAAAGAGCTTACTTTTCAGCCTTTTAATTGTTTTCCTGGGGCGGTTCCTTTTTTATCTACATT]
[+] EMBL BM612489 [CCGCGCCCTGTAGATCCTACAACAAAGAGTTTTGAACATTATTGGATGCATTTTGTAAAAGTGTGTCGTAGATCTTCTGTATGCGAGAGTTGGCTGCTGTGCGGTCGATATGCGTGAAACTAGATGATGGATCGCTTAGTTTACATTTGTAGCATTGCACGATCATTTCCATTAATGTTCAATGATTACGGCTGAACTGGCGGCAGTTTGTAATGTTGTTATACGCGTAATTGGCGCAGATTGACTCTGCCGACAGGTAAATGTATCGCAAAAACGAGGATCGTGGAAGCACTAAGTTATCTACCGAAAGAAGGTAATGCGAACCACCTTGGCTTGGCTTCACAAGTGCTGCATGCTTGAGCATGAAATAGGCATGCTTATTTCTTGGGAAACTAAACTGTGTGATTCACAAATGTGTATACTCTAAGGAAGTTTTACAGTTTTGTTTGCTTATACTAAAAGCAAAATGGGAGTGAAATTAATTTCAGTTTTGTATTGCTATTACACCAATGTTTCAGTTTGTATTAGTGTCGACAACGTACGGATTCGAGCCGTAACGTAAATTTCCGCAATAAAATATGTTCTCAATGTCATCGAAATTCTCACGAGGGGACAAGGGGGGTAGATCAGGCAAAGAGCTTACTTTTCAGCCTTTTAATTGTTTTCCTGGGGCGGTTCCTTTTTTATCTACATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1230#0 CCGGTTTGTTTTAGTGTCGACAACGTACGGATTCGAGCCATAACGTAAATTTCCGCAATA 60
consensus_1230#1 --------------------------------CCGCGCCCT---GTAGATC-CTACAACA 24
** *** * *** ** * *** *
consensus_1230#0 AAATATGTTCTCAATGTCATCGAAATTCTCACGAGGGACAAGGTGGTAGATCAGGCA--- 117
consensus_1230#1 AAGA--GTTTTGAACATTATTGGATGCATTTTGTAAAAGTGTGTCGTAGATCTTCTGTAT 82
** *** * ** * ** * * * * * ** *******
consensus_1230#0 --AAGAGCTTGCTTTT-CAAGCCTTTTAATTGTTTTCTTGTGCGTTTCTTTTTTTTATCT 174
consensus_1230#1 GCGAGAGTTGGCTGCTGTGCGGTCGATATGCGTGAAACTAGATGATGGATCGCTTAGTTT 142
**** * *** * * ** ** * * * * ** * *
consensus_1230#0 ACATTTATTCATACCAACTCTATTCTTTAGAATAAAACATACCATTAGCGAATCGAAACT 234
consensus_1230#1 ACATTTGT--AGCATTGCACGATCATTTCCATTA--ATGTTCAATGATTACGGCTGAACT 198
****** * * * * ** *** * ** * * * ** * * ****
consensus_1230#0 GCCGTTCAATTTAGATATATTTCCACGCTCGGTGTATATAAATTTACATTTCTATATTTT 294
consensus_1230#1 GGCGGCAGTTTGTAATGTTGTTATACGCGTAATTGGCGCAGATTGAC---TCTGCCGACA 255
* ** ** ** * ** **** * * *** ** ***
consensus_1230#0 TGTAACAAAGCAGCAGTAATAAAAAAAGAAAGGAAACAGGGCAAGTTACACTTAAAGAGG 354
consensus_1230#1 GGTAAATGTATCGCAAAAACGAGGATCGTGGAAGCACTAAGTTATCTAC-CGAAAGAAGG 314
**** *** ** * * * ** * * *** * ** ***
consensus_1230#0 TAA-GCGAACTAAGAGCGGATGACCCGAAACCCTCATAATAC--AGATTTGAAGGTGGTA 411
consensus_1230#1 TAATGCGAACCACCTTGGCTTGGCTTCACAAGTGCTGCATGCTTGAGCATGAAATAGGCA 374
*** ****** * * ** * * * * ** * **** ** *
consensus_1230#0 GGGCTAAAGTTTCAGGGCAGCAACAAAAAAACAAGAAAAAATCACACACAATGCTATGTG 471
consensus_1230#1 TGCTTAT--TTCTTGGGAAACTA-AACTGTGTGATTCACAAATGTGTATACT-CTAAGGA 430
* ** ** *** * * * ** * * ** * * * *** *
consensus_1230#0 CACCATACAAATCAGTTTTAGAAAACTATGAAAACAGCTTGTGTAACGCC---TTTTGCC 528
consensus_1230#1 AGTTTTACAGTTTTGTTTGCTTATACTAAAAGCAAAATGGGAGTGAAATTAATTTCAGTT 490
**** * **** * **** * * * * ** * ** *
consensus_1230#0 TAGCGT-GTACGTAAACCGATCCCTTGCTTTCCCTTAAAAAAAAAACAGTGATAGCTACC 587
consensus_1230#1 TTGTATTGCTATTACACCAATGTTTCAGTTTGTATTAGTGTCGACAACGTACGGATTCGA 550
* * * * ** *** ** * *** *** * * ** *
consensus_1230#0 GCCTCAATG--ACTAAATATAGTAGTAGCGGTGCTGAACAT-ACGAAAGAGATAATGACA 644
consensus_1230#1 GCCGTAACGTAAATTTCCGCAATAAAATATGTTCTCAATGTCATCGAAATTCTCACGAGG 610
*** ** * * * * ** * ** ** ** * * ** * * **
consensus_1230#0 AAACGA------TAGATATATTATTTTTGCTATATCACAGGATTGTGTTTGCTTTA--GG 696
consensus_1230#1 GGACAAGGGGGGTAGATCAGGCAAAGAGCTTACTTTTCAGCCTTTTAATTGTTTTCCTGG 670
** * ***** * ** * *** ** * *** *** **
consensus_1230#0 AACTATTCTAAATT---------- 710
consensus_1230#1 GGCGGTTCCTTTTTTATCTACATT 694
* *** **
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||