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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1234#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence
[CCGGTATGTGTGTGGGTGACAAACAGGGGACACTACTACCACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTATCCACCGAATGATGAGCAATCTCTACAAGCGGGCGAACTGCGCACCGCGTACGACTACATCACCAATGGCTCGATCGTGTGCAGCGGGCCGGAGAAACGGTTCACCGTTGGCCAGCTGAAGCTGCAGCAGCGCAAAAAGTGTCAATGATGCCGTAAACGGGCGGCCATACCGCCATCGGGCCGGTCGCGGCGACGCTATCGCCAGTTCCTGTCGATCTGGTGATCTGTCTGTCTGTGTGTATGTGTATGTGTGTGGGTGACAAACAGGGGACACTACTACCACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTATCCACCGAATGATGAGCAATCTCTACAAGCGGACATGACAGGAAGGAACGCCGTACCGGAAGAAGGATCGCTGGCGCGTCTTATACTCTCTTTAATATGCACAGCTACATGCTCGAAACGCACAGCCATTTCAACGACACACGCAGAATCTCATTTAGACTGTAAAGCAATGGCACACACACACAAACGCACCAAACCGC]
[+] EMBL BM585737 [CCGGTATGTGTGTGGGTGACAAACAGGGGACACTACTACCACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTATCCACCGAATGATGAGCAATCTCTACAAGCGGGCGAACTGCGCACCGCGTACGACTACATCACCAATGGCTCGATCGTGTGCAGCGGGCCGGAGAAACGGTTCACCGTTGGCCAGCTGAAGCTGCAGCAGCGCAAAAAGTGTCAATGATGCCGTAAACGGGCGGCCATACCGCCATCGGGCCGGTCGCGGCGACGCTATCGCCAGTTCCTGTCGATCTGGTGATCTGTCTGTCTGTGTGTATGTGTATGTGTGTGGGTGACAAACAGGGGACACTACTACCACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTATCCACCGAATGATGAGCAATCTCTACAAGCGGACATGACAGGAAGGAACGCCGTACCGGAAGAAGGATCGCTGGCGCGTCTTATACTCTCTTTAATATGCACAGCTACATGCTCGAAACGCACAGCCATTTCAACGACACACGCAGAATCTCATTTAGACTGTAAAGCAATGGCACACACACACAAACGCACCAAACCGC]
consensusID : consensus_1234#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence
[CTGTGTGTATGTGTATGTGTGTGGGTGACAAAGAGGGGACACTACTACTACTACTACTACTACTACTACTACTATCCACCGAATGATGAGCAATCTCTACAAGCGGACATGACAGGAAGGAACGCCGTACTGGAAGAAGGATCGCGGGCGCGTCTTATACTCTCTTTAATATGCACAGTTACATGCTCGAAACGCACAGCCATTTCAACGACACACGCAGAATCTCATTTAGACTGTAAAGCAATGGCACACACATACACAAACGCACCAAACCGCCCACTGACTAACTTCGGCACCGTATTTGCGTTCCCACCGCGTGGTGGTACTGGAACACGTGAACGCAGCAGTAGAGCTGCTTAGTTAATAAGTAGAAAAAGGCAGAAGGAGAAGGGGCGACACACTTGCAAAAAGGGCCAGTTTATGGAGCATTATTTACATACATAGACAACAAAAA]
[-] EMBL AGA284050 [CTGTGTGTATGTGTATGTGTGTGGGTGACAAAGAGGGGACACTACTACTACTACTACTACTACTACTACTACTATCCACCGAATGATGAGCAATCTCTACAAGCGGACATGACAGGAAGGAACGCCGTACTGGAAGAAGGATCGCGGGCGCGTCTTATACTCTCTTTAATATGCACAGTTACATGCTCGAAACGCACAGCCATTTCAACGACACACGCAGAATCTCATTTAGACTGTAAAGCAATGGCACACACATACACAAACGCACCAAACCGCCCACTGACTAACTTCGGCACCGTATTTGCGTTCCCACCGCGTGGTGGTACTGGAACACGTGAACGCAGCAGTAGAGCTGCTTAGTTAATAAGTAGAAAAAGGCAGAAGGAGAAGGGGCGACACACTTGCAAAAAGGGCCAGTTTATGGAGCATTATTTACATACATAGACAACAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1234#0 CCGGTATGTGTGTGGGTGACAAACAGGGGACACTACTACCACTACTACTACTACTACTAC 60
consensus_1234#1 ------------------------------------------------------------
consensus_1234#0 TACTACTACTACTACTACTACTACTATCCACCGAATGATGAGCAATCTCTACAAGCGGGC 120
consensus_1234#1 ------------------------------------------------------------
consensus_1234#0 GAACTGCGCACCGCGTACGACTACATCACCAATGGCTCGATCGTGTGCAGCGGGCCGGAG 180
consensus_1234#1 ------------------------------------------------------------
consensus_1234#0 AAACGGTTCACCGTTGGCCAGCTGAAGCTGCAGCAGCGCAAAAAGTGTCAATGATGCCGT 240
consensus_1234#1 ------------------------------------------------------------
consensus_1234#0 AAACGGGCGGCCATACCGCCATCGGGCCGGTCGCGGCGACGCTATCGCCAGTTCCTGTCG 300
consensus_1234#1 ------------------------------------------------------------
consensus_1234#0 ATCTGGTGATCTGTCTGTCTGTGTGTATGTGTATGTGTGTGGGTGACAAACAGGGGACAC 360
consensus_1234#1 ------------------CTGTGTGTATGTGTATGTGTGTGGGTGACAAAGAGGGGACAC 42
******************************** *********
consensus_1234#0 TACTACCACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTATCCACCG 420
consensus_1234#1 T---------------------ACTACTACTACTACTACTACTACTACTACTATCCACCG 81
* **************************************
consensus_1234#0 AATGATGAGCAATCTCTACAAGCGGACATGACAGGAAGGAACGCCGTACCGGAAGAAGGA 480
consensus_1234#1 AATGATGAGCAATCTCTACAAGCGGACATGACAGGAAGGAACGCCGTACTGGAAGAAGGA 141
************************************************* **********
consensus_1234#0 TCGCTGGCGCGTCTTATACTCTCTTTAATATGCACAGCTACATGCTCGAAACGCACAGCC 540
consensus_1234#1 TCGCGGGCGCGTCTTATACTCTCTTTAATATGCACAGTTACATGCTCGAAACGCACAGCC 201
**** ******************************** **********************
consensus_1234#0 ATTTCAACGACACACGCAGAATCTCATTTAGACTGTAAAGCAATGGCACACACA--CACA 598
consensus_1234#1 ATTTCAACGACACACGCAGAATCTCATTTAGACTGTAAAGCAATGGCACACACATACACA 261
****************************************************** ****
consensus_1234#0 AACGCACCAAACCGC--------------------------------------------- 613
consensus_1234#1 AACGCACCAAACCGCCCACTGACTAACTTCGGCACCGTATTTGCGTTCCCACCGCGTGGT 321
***************
consensus_1234#0 ------------------------------------------------------------
consensus_1234#1 GGTACTGGAACACGTGAACGCAGCAGTAGAGCTGCTTAGTTAATAAGTAGAAAAAGGCAG 381
consensus_1234#0 ------------------------------------------------------------
consensus_1234#1 AAGGAGAAGGGGCGACACACTTGCAAAAAGGGCCAGTTTATGGAGCATTATTTACATACA 441
consensus_1234#0 -------------
consensus_1234#1 TAGACAACAAAAA 454
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||