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These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1234 cluster # 1234       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1234#0 length = 613 sequences # 1  
consensus_1234#1 length = 454 sequences # 1  

consensusID : consensus_1234#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 613
fasta sequence
                              [CCGGTATGTGTGTGGGTGACAAACAGGGGACACTACTACCACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTATCCACCGAATGATGAGCAATCTCTACAAGCGGGCGAACTGCGCACCGCGTACGACTACATCACCAATGGCTCGATCGTGTGCAGCGGGCCGGAGAAACGGTTCACCGTTGGCCAGCTGAAGCTGCAGCAGCGCAAAAAGTGTCAATGATGCCGTAAACGGGCGGCCATACCGCCATCGGGCCGGTCGCGGCGACGCTATCGCCAGTTCCTGTCGATCTGGTGATCTGTCTGTCTGTGTGTATGTGTATGTGTGTGGGTGACAAACAGGGGACACTACTACCACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTATCCACCGAATGATGAGCAATCTCTACAAGCGGACATGACAGGAAGGAACGCCGTACCGGAAGAAGGATCGCTGGCGCGTCTTATACTCTCTTTAATATGCACAGCTACATGCTCGAAACGCACAGCCATTTCAACGACACACGCAGAATCTCATTTAGACTGTAAAGCAATGGCACACACACACAAACGCACCAAACCGC]

[+] EMBL BM585737             [CCGGTATGTGTGTGGGTGACAAACAGGGGACACTACTACCACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTATCCACCGAATGATGAGCAATCTCTACAAGCGGGCGAACTGCGCACCGCGTACGACTACATCACCAATGGCTCGATCGTGTGCAGCGGGCCGGAGAAACGGTTCACCGTTGGCCAGCTGAAGCTGCAGCAGCGCAAAAAGTGTCAATGATGCCGTAAACGGGCGGCCATACCGCCATCGGGCCGGTCGCGGCGACGCTATCGCCAGTTCCTGTCGATCTGGTGATCTGTCTGTCTGTGTGTATGTGTATGTGTGTGGGTGACAAACAGGGGACACTACTACCACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTATCCACCGAATGATGAGCAATCTCTACAAGCGGACATGACAGGAAGGAACGCCGTACCGGAAGAAGGATCGCTGGCGCGTCTTATACTCTCTTTAATATGCACAGCTACATGCTCGAAACGCACAGCCATTTCAACGACACACGCAGAATCTCATTTAGACTGTAAAGCAATGGCACACACACACAAACGCACCAAACCGC]


>consensus_1234#0 CCGGTATGTGTGTGGGTGACAAACAGGGGACACTACTACCACTACTACTACTACTACTAC TACTACTACTACTACTACTACTACTATCCACCGAATGATGAGCAATCTCTACAAGCGGGC GAACTGCGCACCGCGTACGACTACATCACCAATGGCTCGATCGTGTGCAGCGGGCCGGAG AAACGGTTCACCGTTGGCCAGCTGAAGCTGCAGCAGCGCAAAAAGTGTCAATGATGCCGT AAACGGGCGGCCATACCGCCATCGGGCCGGTCGCGGCGACGCTATCGCCAGTTCCTGTCG ATCTGGTGATCTGTCTGTCTGTGTGTATGTGTATGTGTGTGGGTGACAAACAGGGGACAC TACTACCACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTATCCACCG AATGATGAGCAATCTCTACAAGCGGACATGACAGGAAGGAACGCCGTACCGGAAGAAGGA TCGCTGGCGCGTCTTATACTCTCTTTAATATGCACAGCTACATGCTCGAAACGCACAGCC ATTTCAACGACACACGCAGAATCTCATTTAGACTGTAAAGCAATGGCACACACACACAAA CGCACCAAACCGC



consensusID : consensus_1234#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 454
fasta sequence
                              [CTGTGTGTATGTGTATGTGTGTGGGTGACAAAGAGGGGACACTACTACTACTACTACTACTACTACTACTACTATCCACCGAATGATGAGCAATCTCTACAAGCGGACATGACAGGAAGGAACGCCGTACTGGAAGAAGGATCGCGGGCGCGTCTTATACTCTCTTTAATATGCACAGTTACATGCTCGAAACGCACAGCCATTTCAACGACACACGCAGAATCTCATTTAGACTGTAAAGCAATGGCACACACATACACAAACGCACCAAACCGCCCACTGACTAACTTCGGCACCGTATTTGCGTTCCCACCGCGTGGTGGTACTGGAACACGTGAACGCAGCAGTAGAGCTGCTTAGTTAATAAGTAGAAAAAGGCAGAAGGAGAAGGGGCGACACACTTGCAAAAAGGGCCAGTTTATGGAGCATTATTTACATACATAGACAACAAAAA]

[-] EMBL AGA284050            [CTGTGTGTATGTGTATGTGTGTGGGTGACAAAGAGGGGACACTACTACTACTACTACTACTACTACTACTACTATCCACCGAATGATGAGCAATCTCTACAAGCGGACATGACAGGAAGGAACGCCGTACTGGAAGAAGGATCGCGGGCGCGTCTTATACTCTCTTTAATATGCACAGTTACATGCTCGAAACGCACAGCCATTTCAACGACACACGCAGAATCTCATTTAGACTGTAAAGCAATGGCACACACATACACAAACGCACCAAACCGCCCACTGACTAACTTCGGCACCGTATTTGCGTTCCCACCGCGTGGTGGTACTGGAACACGTGAACGCAGCAGTAGAGCTGCTTAGTTAATAAGTAGAAAAAGGCAGAAGGAGAAGGGGCGACACACTTGCAAAAAGGGCCAGTTTATGGAGCATTATTTACATACATAGACAACAAAAA]


>consensus_1234#1 CTGTGTGTATGTGTATGTGTGTGGGTGACAAAGAGGGGACACTACTACTACTACTACTAC TACTACTACTACTATCCACCGAATGATGAGCAATCTCTACAAGCGGACATGACAGGAAGG AACGCCGTACTGGAAGAAGGATCGCGGGCGCGTCTTATACTCTCTTTAATATGCACAGTT ACATGCTCGAAACGCACAGCCATTTCAACGACACACGCAGAATCTCATTTAGACTGTAAA GCAATGGCACACACATACACAAACGCACCAAACCGCCCACTGACTAACTTCGGCACCGTA TTTGCGTTCCCACCGCGTGGTGGTACTGGAACACGTGAACGCAGCAGTAGAGCTGCTTAG TTAATAAGTAGAAAAAGGCAGAAGGAGAAGGGGCGACACACTTGCAAAAAGGGCCAGTTT ATGGAGCATTATTTACATACATAGACAACAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1234#0      CCGGTATGTGTGTGGGTGACAAACAGGGGACACTACTACCACTACTACTACTACTACTAC 60
consensus_1234#1      ------------------------------------------------------------
                                                                                  

consensus_1234#0      TACTACTACTACTACTACTACTACTATCCACCGAATGATGAGCAATCTCTACAAGCGGGC 120
consensus_1234#1      ------------------------------------------------------------
                                                                                  

consensus_1234#0      GAACTGCGCACCGCGTACGACTACATCACCAATGGCTCGATCGTGTGCAGCGGGCCGGAG 180
consensus_1234#1      ------------------------------------------------------------
                                                                                  

consensus_1234#0      AAACGGTTCACCGTTGGCCAGCTGAAGCTGCAGCAGCGCAAAAAGTGTCAATGATGCCGT 240
consensus_1234#1      ------------------------------------------------------------
                                                                                  

consensus_1234#0      AAACGGGCGGCCATACCGCCATCGGGCCGGTCGCGGCGACGCTATCGCCAGTTCCTGTCG 300
consensus_1234#1      ------------------------------------------------------------
                                                                                  

consensus_1234#0      ATCTGGTGATCTGTCTGTCTGTGTGTATGTGTATGTGTGTGGGTGACAAACAGGGGACAC 360
consensus_1234#1      ------------------CTGTGTGTATGTGTATGTGTGTGGGTGACAAAGAGGGGACAC 42
                                        ******************************** *********

consensus_1234#0      TACTACCACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTATCCACCG 420
consensus_1234#1      T---------------------ACTACTACTACTACTACTACTACTACTACTATCCACCG 81
                      *                     **************************************

consensus_1234#0      AATGATGAGCAATCTCTACAAGCGGACATGACAGGAAGGAACGCCGTACCGGAAGAAGGA 480
consensus_1234#1      AATGATGAGCAATCTCTACAAGCGGACATGACAGGAAGGAACGCCGTACTGGAAGAAGGA 141
                      ************************************************* **********

consensus_1234#0      TCGCTGGCGCGTCTTATACTCTCTTTAATATGCACAGCTACATGCTCGAAACGCACAGCC 540
consensus_1234#1      TCGCGGGCGCGTCTTATACTCTCTTTAATATGCACAGTTACATGCTCGAAACGCACAGCC 201
                      **** ******************************** **********************

consensus_1234#0      ATTTCAACGACACACGCAGAATCTCATTTAGACTGTAAAGCAATGGCACACACA--CACA 598
consensus_1234#1      ATTTCAACGACACACGCAGAATCTCATTTAGACTGTAAAGCAATGGCACACACATACACA 261
                      ******************************************************  ****

consensus_1234#0      AACGCACCAAACCGC--------------------------------------------- 613
consensus_1234#1      AACGCACCAAACCGCCCACTGACTAACTTCGGCACCGTATTTGCGTTCCCACCGCGTGGT 321
                      ***************                                             

consensus_1234#0      ------------------------------------------------------------
consensus_1234#1      GGTACTGGAACACGTGAACGCAGCAGTAGAGCTGCTTAGTTAATAAGTAGAAAAAGGCAG 381
                                                                                  

consensus_1234#0      ------------------------------------------------------------
consensus_1234#1      AAGGAGAAGGGGCGACACACTTGCAAAAAGGGCCAGTTTATGGAGCATTATTTACATACA 441
                                                                                  

consensus_1234#0      -------------
consensus_1234#1      TAGACAACAAAAA 454
                                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)