These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1234#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [CCGGTATGTGTGTGGGTGACAAACAGGGGACACTACTACCACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTATCCACCGAATGATGAGCAATCTCTACAAGCGGGCGAACTGCGCACCGCGTACGACTACATCACCAATGGCTCGATCGTGTGCAGCGGGCCGGAGAAACGGTTCACCGTTGGCCAGCTGAAGCTGCAGCAGCGCAAAAAGTGTCAATGATGCCGTAAACGGGCGGCCATACCGCCATCGGGCCGGTCGCGGCGACGCTATCGCCAGTTCCTGTCGATCTGGTGATCTGTCTGTCTGTGTGTATGTGTATGTGTGTGGGTGACAAACAGGGGACACTACTACCACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTATCCACCGAATGATGAGCAATCTCTACAAGCGGACATGACAGGAAGGAACGCCGTACCGGAAGAAGGATCGCTGGCGCGTCTTATACTCTCTTTAATATGCACAGCTACATGCTCGAAACGCACAGCCATTTCAACGACACACGCAGAATCTCATTTAGACTGTAAAGCAATGGCACACACACACAAACGCACCAAACCGC] [+] EMBL BM585737 [CCGGTATGTGTGTGGGTGACAAACAGGGGACACTACTACCACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTATCCACCGAATGATGAGCAATCTCTACAAGCGGGCGAACTGCGCACCGCGTACGACTACATCACCAATGGCTCGATCGTGTGCAGCGGGCCGGAGAAACGGTTCACCGTTGGCCAGCTGAAGCTGCAGCAGCGCAAAAAGTGTCAATGATGCCGTAAACGGGCGGCCATACCGCCATCGGGCCGGTCGCGGCGACGCTATCGCCAGTTCCTGTCGATCTGGTGATCTGTCTGTCTGTGTGTATGTGTATGTGTGTGGGTGACAAACAGGGGACACTACTACCACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTATCCACCGAATGATGAGCAATCTCTACAAGCGGACATGACAGGAAGGAACGCCGTACCGGAAGAAGGATCGCTGGCGCGTCTTATACTCTCTTTAATATGCACAGCTACATGCTCGAAACGCACAGCCATTTCAACGACACACGCAGAATCTCATTTAGACTGTAAAGCAATGGCACACACACACAAACGCACCAAACCGC] consensusID : consensus_1234#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence [CTGTGTGTATGTGTATGTGTGTGGGTGACAAAGAGGGGACACTACTACTACTACTACTACTACTACTACTACTATCCACCGAATGATGAGCAATCTCTACAAGCGGACATGACAGGAAGGAACGCCGTACTGGAAGAAGGATCGCGGGCGCGTCTTATACTCTCTTTAATATGCACAGTTACATGCTCGAAACGCACAGCCATTTCAACGACACACGCAGAATCTCATTTAGACTGTAAAGCAATGGCACACACATACACAAACGCACCAAACCGCCCACTGACTAACTTCGGCACCGTATTTGCGTTCCCACCGCGTGGTGGTACTGGAACACGTGAACGCAGCAGTAGAGCTGCTTAGTTAATAAGTAGAAAAAGGCAGAAGGAGAAGGGGCGACACACTTGCAAAAAGGGCCAGTTTATGGAGCATTATTTACATACATAGACAACAAAAA] [-] EMBL AGA284050 [CTGTGTGTATGTGTATGTGTGTGGGTGACAAAGAGGGGACACTACTACTACTACTACTACTACTACTACTACTATCCACCGAATGATGAGCAATCTCTACAAGCGGACATGACAGGAAGGAACGCCGTACTGGAAGAAGGATCGCGGGCGCGTCTTATACTCTCTTTAATATGCACAGTTACATGCTCGAAACGCACAGCCATTTCAACGACACACGCAGAATCTCATTTAGACTGTAAAGCAATGGCACACACATACACAAACGCACCAAACCGCCCACTGACTAACTTCGGCACCGTATTTGCGTTCCCACCGCGTGGTGGTACTGGAACACGTGAACGCAGCAGTAGAGCTGCTTAGTTAATAAGTAGAAAAAGGCAGAAGGAGAAGGGGCGACACACTTGCAAAAAGGGCCAGTTTATGGAGCATTATTTACATACATAGACAACAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1234#0 CCGGTATGTGTGTGGGTGACAAACAGGGGACACTACTACCACTACTACTACTACTACTAC 60 consensus_1234#1 ------------------------------------------------------------ consensus_1234#0 TACTACTACTACTACTACTACTACTATCCACCGAATGATGAGCAATCTCTACAAGCGGGC 120 consensus_1234#1 ------------------------------------------------------------ consensus_1234#0 GAACTGCGCACCGCGTACGACTACATCACCAATGGCTCGATCGTGTGCAGCGGGCCGGAG 180 consensus_1234#1 ------------------------------------------------------------ consensus_1234#0 AAACGGTTCACCGTTGGCCAGCTGAAGCTGCAGCAGCGCAAAAAGTGTCAATGATGCCGT 240 consensus_1234#1 ------------------------------------------------------------ consensus_1234#0 AAACGGGCGGCCATACCGCCATCGGGCCGGTCGCGGCGACGCTATCGCCAGTTCCTGTCG 300 consensus_1234#1 ------------------------------------------------------------ consensus_1234#0 ATCTGGTGATCTGTCTGTCTGTGTGTATGTGTATGTGTGTGGGTGACAAACAGGGGACAC 360 consensus_1234#1 ------------------CTGTGTGTATGTGTATGTGTGTGGGTGACAAAGAGGGGACAC 42 ******************************** ********* consensus_1234#0 TACTACCACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTATCCACCG 420 consensus_1234#1 T---------------------ACTACTACTACTACTACTACTACTACTACTATCCACCG 81 * ************************************** consensus_1234#0 AATGATGAGCAATCTCTACAAGCGGACATGACAGGAAGGAACGCCGTACCGGAAGAAGGA 480 consensus_1234#1 AATGATGAGCAATCTCTACAAGCGGACATGACAGGAAGGAACGCCGTACTGGAAGAAGGA 141 ************************************************* ********** consensus_1234#0 TCGCTGGCGCGTCTTATACTCTCTTTAATATGCACAGCTACATGCTCGAAACGCACAGCC 540 consensus_1234#1 TCGCGGGCGCGTCTTATACTCTCTTTAATATGCACAGTTACATGCTCGAAACGCACAGCC 201 **** ******************************** ********************** consensus_1234#0 ATTTCAACGACACACGCAGAATCTCATTTAGACTGTAAAGCAATGGCACACACA--CACA 598 consensus_1234#1 ATTTCAACGACACACGCAGAATCTCATTTAGACTGTAAAGCAATGGCACACACATACACA 261 ****************************************************** **** consensus_1234#0 AACGCACCAAACCGC--------------------------------------------- 613 consensus_1234#1 AACGCACCAAACCGCCCACTGACTAACTTCGGCACCGTATTTGCGTTCCCACCGCGTGGT 321 *************** consensus_1234#0 ------------------------------------------------------------ consensus_1234#1 GGTACTGGAACACGTGAACGCAGCAGTAGAGCTGCTTAGTTAATAAGTAGAAAAAGGCAG 381 consensus_1234#0 ------------------------------------------------------------ consensus_1234#1 AAGGAGAAGGGGCGACACACTTGCAAAAAGGGCCAGTTTATGGAGCATTATTTACATACA 441 consensus_1234#0 ------------- consensus_1234#1 TAGACAACAAAAA 454 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||