These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1240#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 721 fasta sequence [GCACGCGCAGCAGGCTGAGTGAGAAAAAAAGGGTCGTGCGTGTTCGCAAGATTCGGCCACCAACATTAGCCCCTAGCACCATCAGGCAAAGCAAAAGGCTACGCAGTACAAAAGCATTGTTCTAGGGAGTAGCGGGGGGAAAAGGTCGTGGAGCGGACCGCGTAAGTGCATAATCGGGCGAGTACAGCCCTCCCACCCCATTTGTCGGTGCAAAACTCTGTCGTGGGATGCACCCCCCAGCACCCAGTGTGAAGCGTGCATGAGCGGGGTAGTGGCATGTGCAAACCTCTCCCCGTGTTCCCCCCTGTTCCAGTGCAGCGCAAACCCGTTCCGCCGCACTGCCGCACTTCGCTCGATGACTAATCCATCCAACCGTATCGTCCGGCGCAACAATACCGTGGTGCAGCTGGTGGTGGCGGCGTGAAACACTCCACCCAGGACGGGCATGCGATCGCAGCCCAGAGCAGCATTCAGACGACGCTACTACTACTATCGCCGCACGGTCCGTCACCGTCCGGTTCCGGTCTGGCGCAGACTATCGGGTTAAACGTCATGACACCTCAGCGACCACCGCGGCGAAGGGCCCAGTCCGTGGGCAACTCGAGCTACGGCTCGAGCCCGGCCCTGTCGTCCCACACGCCCCGAGGATCACTCTTTACCGCTAACGAGGAAGATGTATGCTACGTACGCATCCGGGTCCTGGGGGCGAGCGGACTGGCCA] [+] EMBL BX605368 [GCACGCGCAGCAGGCTGAGTGAGAAAAAAAGGGTCGTGCGTGTTCGCAAGATTCGGCCACCAACATTAGCCCCTAGCACCATCAGGCAAAGCAAAAGGCTACGCAGTACAAAAGCATTGTTCTAGGGAGTAGCGGGGGGAAAAGGTCGTGGAGCGGACCGCGTAAGTGCATAATCGGGCGAGTACAGCCCTCCCACCCCATTTGTCGGTGCAAAACTCTGTCGTGGGATGCACCCCCCAGCACCCAGTGTGAAGCGTGCATGAGCGGGGTAGTGGCATGTGCAAACCTCTCCCCGTGTTCCCCCCTGTTCCAGTGCAGCGCAAACCCGTTCCGCCGCACTGCCGCACTTCGCTCGATGACTAATCCATCCAACCGTATCGTCCGGCGCAACAATACCGTGGTGCAGCTGGTGGTGGCGGCGTGAAACACTCCACCCAGGACGGGCATGCGATCGCAGCCCAGAGCAGCATTCAGACGACGCTACTACTACTATCGCCGCACGGTCCGTCACCGTCCGGTTCCGGTCTGGCGCAGACTATCGGGTTAAACGTCATGACACCTCAGCGACCACCGCGGCGAAGGGCCCAGTCCGTGGGCAACTCGAGCTACGGCTCGAGCCCGGCCCTGTCGTCCCACACGCCCCGAGGATCACTCTTTACCGCTAACGAGGAAGATGTATGCTACGTACGCATCCGGGTCCTGGGGGCGAGCGGACTGGCCA] consensusID : consensus_1240#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 639 fasta sequence [CCGGTACATGGTTGCGAGCAGATGTTACCGCGGGTTTTGCTGCTGCTTGTTGCAAAACTGGCTGCCAGTTGTGTTTCATCCGGGTGGAAAAATTGCGTTTTCCGTTTGGTTTGCAGCGAAGCTGCACGCGCCCCCCTGTATAATTGTGTTCTTTGAGAAGGAGGCGAAGGAAAGTGACCCCGATGGGGTAAACATTTCAGTGACTCAAAATTAAGTGCGACCAAAAACGATAGAGAAGCGAAAGGAAGCGAATCGGAGTGACCTAAGGGGAGGGGGTGTTCTGAAGGGAGGTTCCCCGCGGCAACCAACAAATCGAACGAAATGACGCGAACCGGGATGTTGATCAACTTGAACGAGGAAGATGTATGCTACGTGCGCATCCGGGTCCTGGGGGCGAGCGGGCTGGCCAAGAAGGACATCTTTGGCTACAGCGATCCTTACGTGAAGATTGAGCAGAACACCATCACCGGCGACGTCAACGTGGACCACATGGTGACGAAAACGAAACGAAGGACGCTGAACCCGGTCTGGAACGAGGAGTTTGTGTTTCGCGTCAAACCGAACGAGCACAAGCTGGTGTTTCAGGTGTTCGACGAGAATCGGCTGACGCGCGACGGCTTCATGGGGCTAGTCGATCTG] [+] EMBL BM612303 [CCGGTACATGGTTGCGAGCAGATGTTACCGCGGGTTTTGCTGCTGCTTGTTGCAAAACTGGCTGCCAGTTGTGTTTCATCCGGGTGGAAAAATTGCGTTTTCCGTTTGGTTTGCAGCGAAGCTGCACGCGCCCCCCTGTATAATTGTGTTCTTTGAGAAGGAGGCGAAGGAAAGTGACCCCGATGGGGTAAACATTTCAGTGACTCAAAATTAAGTGCGACCAAAAACGATAGAGAAGCGAAAGGAAGCGAATCGGAGTGACCTAAGGGGAGGGGGTGTTCTGAAGGGAGGTTCCCCGCGGCAACCAACAAATCGAACGAAATGACGCGAACCGGGATGTTGATCAACTTGAACGAGGAAGATGTATGCTACGTGCGCATCCGGGTCCTGGGGGCGAGCGGGCTGGCCAAGAAGGACATCTTTGGCTACAGCGATCCTTACGTGAAGATTGAGCAGAACACCATCACCGGCGACGTCAACGTGGACCACATGGTGACGAAAACGAAACGAAGGACGCTGAACCCGGTCTGGAACGAGGAGTTTGTGTTTCGCGTCAAACCGAACGAGCACAAGCTGGTGTTTCAGGTGTTCGACGAGAATCGGCTGACGCGCGACGGCTTCATGGGGCTAGTCGATCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1240#0 GCACGCGCAGCAGGCTGAGTGAGAAAAAAAGGGTCGTGCGTGTTCGCAAGATTCGGCCAC 60 consensus_1240#1 --------------------------------CCGGTACATGGTTGCGAGCAGATGTTAC 28 ** * ** * ** ** * ** consensus_1240#0 CAACATTAGCCCCTAGCACCATCAGGCAAAGCAAAAGGCTACGCAGTACAAAAGCATTGT 120 consensus_1240#1 CG----CGGGTTTTGCTGCTGCTTGTTGCAA-AACTGGCTGC-CAGTTGTGTTTCATCCG 82 * * * * * * ** **** * **** *** consensus_1240#0 TCTAGGGAG-TAGCGGGGGGAAAAGGTCGTGGAGCGGACCGCGTAAGTGCATAATCGGGC 179 consensus_1240#1 GGTGGAAAAATTGCGTTTTCCGTTTGGTTTGCAGCGAAGC-TGCACGCGCCCCCCTGTAT 141 * * * * *** * ** **** * * * * * ** * consensus_1240#0 GAGTACAGCCCTCCCACCCCATTTGTCGGTGCAAAACTCTGTCGTGGGATGCACCCCCCA 239 consensus_1240#1 AATTGTGTTCTTTGAGAAGGAGGCGAAGGAAAGTGACCCCG--ATGGGGTAAACATTTCA 199 * * * * * * ** ** * * **** * ** ** consensus_1240#0 GC-ACCCAGTGTGAAGCGTG--CATGAGCGGGGTAGTGGCATGTGCAAACCTCTCCCCGT 296 consensus_1240#1 GTGACTCAAAATTAAGTGCGACCAAAAACGATAGAGAAGCGAAAGGAAGCGAATCGGAGT 259 * ** ** * *** * * ** * ** ** ** * ** * ** ** consensus_1240#0 GTTCCCCCCTGTTCCAGTGCAGCGCAAACCCGTTCCGCCGCACTGCCGCACTTCGCTCGA 356 consensus_1240#1 GACCTAAGGGGAGGGGGTGTTCTGAAGGGAGGTTCC-CCGCGGCAAC-CAACAAATCGAA 317 * * * *** * * ***** **** * ** * consensus_1240#0 TGACTAATCCATCCAACCGTATCGTCCGGCGCAACAATACCGTGGTGCAGCTGGTGGTGG 416 consensus_1240#1 CGA--AATGACGCGAACCGGGATGTT--GATCAACTTGAACGAGGAA-----GATGTATG 368 ** *** * ***** ** * **** * ** ** * ** * consensus_1240#0 CGGCGTGAAACACTCCACCCAGGACGGGCATGCGATCGCAGCCCAGAGCAGCATTCAGAC 476 consensus_1240#1 CTACGTGCGCATCCGGGTCCTGG--GGGCGAGCGGGC-TGGCCAAGAAGGACATCTTTG- 424 * **** * ** ** **** *** * *** *** *** consensus_1240#0 GACGCTACTACTACTATCGCCGCACGGTCCGTCACCGTCCGGTTCCGGTCTGGCGCAGAC 536 consensus_1240#1 ---GCTACAGCGATCCTTACGTGAAGATTGAGCAGAACACCATCACCGGC-GACGTCAAC 480 ***** * * * * * * * ** * * * * * * ** ** consensus_1240#0 TATCGGGTTAAACGTCATGACACCTCAGCGACCACCGCGGCGAAGGGCCCAGTCCGTGGG 596 consensus_1240#1 -GTGGACCACATGGTGACGAAAACGAAACGA-----AGGACGCTGAACCCGGTCTG-GAA 533 * * * ** * ** * * * *** * ** * *** *** * * consensus_1240#0 CAACTCGAGCTACGGCTCGAGCCCGGCCCTGTCGTCCCACACGCCCCGAGGATCACTCTT 656 consensus_1240#1 CGA--------GGAGTTTGTGTTTCGC---GTCAAACCGAACGAGCACAAGCTGGTGTTT 582 * * * * * * ** *** ** *** * * * * ** consensus_1240#0 TACCGCTAACGAGGAAGATGTATGCTACGTACGCATCCGGGTCCTGGGGGCGAGCGGACT 716 consensus_1240#1 CAG-GTGTTCGACGAGAAT---CGGCTGACGCGCGACGGCTTCATGGGGCTAGTCGATCT 638 * * *** ** ** * *** * * ** ***** ** ** consensus_1240#0 GGCCA 721 consensus_1240#1 G---- 639 * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||