These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1250#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 639 fasta sequence [CCGGACGACGCGCTGCACATCAAGGCGGAACAGATCGTCGAAGCACACTTCGGAGCGGTGCGAGTCGTAGCGGAGGGCAAGGGCTCGCAGCTGCTCATCGGTACGACGAAGAACTGCATACTCTCCGGCGACTTTACCCTCAGCCTCGTGCCGATCGTGATGGGCCACACGGACATTCTGTGGTCGCTGGCAACGCATCCGCAGGTGGCACAGTTCGTCACCGGCGGGCGGGACAGGTTGCTGCAGCTGTGGGACTCGCTGTCGCACTCGGTCGTGTGGAGCAAGGACATCGGCGAACCGATCCACGCGGTCCAGATAGCGAATGCGGGTGACGTGATTGTGGCGGGCGGTGTCGGTGGCCGTTGGTCGGTGTTCGATATCGTAACCCGGGAGCTGCTGGCCACGTACACGGACGGGCAGGAGGTGATACAGTGCATGCAGTTCTCACCCGACGGTAATCTGCTGGCGGTCGGCTCCAAAGACAACTGCATCTACATCTACCAGTGCACGAAGGTGGCGCACCGGTTTTCCAAGATTGGAAAGTGCACGGGTCATTCTAGTTTCATATCACATCTCGATTGGTCCAAGGACAGTCAAGTGTTGCGATCGAATTCGGGCGACTACGAAATACTATACTGG] [+] EMBL BM598783 [CCGGACGACGCGCTGCACATCAAGGCGGAACAGATCGTCGAAGCACACTTCGGAGCGGTGCGAGTCGTAGCGGAGGGCAAGGGCTCGCAGCTGCTCATCGGTACGACGAAGAACTGCATACTCTCCGGCGACTTTACCCTCAGCCTCGTGCCGATCGTGATGGGCCACACGGACATTCTGTGGTCGCTGGCAACGCATCCGCAGGTGGCACAGTTCGTCACCGGCGGGCGGGACAGGTTGCTGCAGCTGTGGGACTCGCTGTCGCACTCGGTCGTGTGGAGCAAGGACATCGGCGAACCGATCCACGCGGTCCAGATAGCGAATGCGGGTGACGTGATTGTGGCGGGCGGTGTCGGTGGCCGTTGGTCGGTGTTCGATATCGTAACCCGGGAGCTGCTGGCCACGTACACGGACGGGCAGGAGGTGATACAGTGCATGCAGTTCTCACCCGACGGTAATCTGCTGGCGGTCGGCTCCAAAGACAACTGCATCTACATCTACCAGTGCACGAAGGTGGCGCACCGGTTTTCCAAGATTGGAAAGTGCACGGGTCATTCTAGTTTCATATCACATCTCGATTGGTCCAAGGACAGTCAAGTGTTGCGATCGAATTCGGGCGACTACGAAATACTATACTGG] consensusID : consensus_1250#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence [CCGCGGACGCGTGGGCGTCGAAGCACACTTCGGAGCGGTGCGAGTCGTAGCGGAGGGCAAGGGCTCGCAGCTGCTCATCGGTACGACGAAGAACTGCATACTTTCCGGCGACTTTACCCTCAGCCTCGTGCCGATCGTGATGGGCCACACGGACATTCTGTGGTCGCTGGCAACGCATCCGCAGGTGGCACAGTTCGTCACCGGCGGGCGGGACAGGTTGCTGCAGCTGTGGGACTCGCTGTCGCACTCGGTCGTGTGGAGCAAGGACATCGGCGAACCGATCCACGCGGTCCAGATAGCGAATGCGGGCGACGTGATTGTGGCGGGCGGTGTCGGTGGCCGTTGGTCGGTGTTCGATATCGTAACCCGGGAGCTGTTGGCCACGTACACGGACGGGCAGGAGGTGATACAGTGCATGCAGTTCTCACCCGACGGTAATCTGCTGGCGGTCGGCTCCAAAGACAACTGCATCTACATCTACCAGTGCACGAAGGTGGCGCACCGGTTTTCCAAGATTGGAAAGTGCACGGGTCATTCTAGTTTCATATCACATCTCGATTGGTCCAAGGACAGTCAAGTGTTGCGATCGAACTCGGGCGACTACGAAATACTATACTGGAATC] [+] EMBL BM586253 [CCGCGGACGCGTGGGCGTCGAAGCACACTTCGGAGCGGTGCGAGTCGTAGCGGAGGGCAAGGGCTCGCAGCTGCTCATCGGTACGACGAAGAACTGCATACTTTCCGGCGACTTTACCCTCAGCCTCGTGCCGATCGTGATGGGCCACACGGACATTCTGTGGTCGCTGGCAACGCATCCGCAGGTGGCACAGTTCGTCACCGGCGGGCGGGACAGGTTGCTGCAGCTGTGGGACTCGCTGTCGCACTCGGTCGTGTGGAGCAAGGACATCGGCGAACCGATCCACGCGGTCCAGATAGCGAATGCGGGCGACGTGATTGTGGCGGGCGGTGTCGGTGGCCGTTGGTCGGTGTTCGATATCGTAACCCGGGAGCTGTTGGCCACGTACACGGACGGGCAGGAGGTGATACAGTGCATGCAGTTCTCACCCGACGGTAATCTGCTGGCGGTCGGCTCCAAAGACAACTGCATCTACATCTACCAGTGCACGAAGGTGGCGCACCGGTTTTCCAAGATTGGAAAGTGCACGGGTCATTCTAGTTTCATATCACATCTCGATTGGTCCAAGGACAGTCAAGTGTTGCGATCGAACTCGGGCGACTACGAAATACTATACTGGAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1250#0 CCGGACGACGCGCTGCACATCAAGGCGGAACAGATCGTCGAAGCACACTTCGGAGCGGTG 60 consensus_1250#1 -------------------CCGCGGACGCGTGGG-CGTCGAAGCACACTTCGGAGCGGTG 40 * ** * * ************************* consensus_1250#0 CGAGTCGTAGCGGAGGGCAAGGGCTCGCAGCTGCTCATCGGTACGACGAAGAACTGCATA 120 consensus_1250#1 CGAGTCGTAGCGGAGGGCAAGGGCTCGCAGCTGCTCATCGGTACGACGAAGAACTGCATA 100 ************************************************************ consensus_1250#0 CTCTCCGGCGACTTTACCCTCAGCCTCGTGCCGATCGTGATGGGCCACACGGACATTCTG 180 consensus_1250#1 CTTTCCGGCGACTTTACCCTCAGCCTCGTGCCGATCGTGATGGGCCACACGGACATTCTG 160 ** ********************************************************* consensus_1250#0 TGGTCGCTGGCAACGCATCCGCAGGTGGCACAGTTCGTCACCGGCGGGCGGGACAGGTTG 240 consensus_1250#1 TGGTCGCTGGCAACGCATCCGCAGGTGGCACAGTTCGTCACCGGCGGGCGGGACAGGTTG 220 ************************************************************ consensus_1250#0 CTGCAGCTGTGGGACTCGCTGTCGCACTCGGTCGTGTGGAGCAAGGACATCGGCGAACCG 300 consensus_1250#1 CTGCAGCTGTGGGACTCGCTGTCGCACTCGGTCGTGTGGAGCAAGGACATCGGCGAACCG 280 ************************************************************ consensus_1250#0 ATCCACGCGGTCCAGATAGCGAATGCGGGTGACGTGATTGTGGCGGGCGGTGTCGGTGGC 360 consensus_1250#1 ATCCACGCGGTCCAGATAGCGAATGCGGGCGACGTGATTGTGGCGGGCGGTGTCGGTGGC 340 ***************************** ****************************** consensus_1250#0 CGTTGGTCGGTGTTCGATATCGTAACCCGGGAGCTGCTGGCCACGTACACGGACGGGCAG 420 consensus_1250#1 CGTTGGTCGGTGTTCGATATCGTAACCCGGGAGCTGTTGGCCACGTACACGGACGGGCAG 400 ************************************ *********************** consensus_1250#0 GAGGTGATACAGTGCATGCAGTTCTCACCCGACGGTAATCTGCTGGCGGTCGGCTCCAAA 480 consensus_1250#1 GAGGTGATACAGTGCATGCAGTTCTCACCCGACGGTAATCTGCTGGCGGTCGGCTCCAAA 460 ************************************************************ consensus_1250#0 GACAACTGCATCTACATCTACCAGTGCACGAAGGTGGCGCACCGGTTTTCCAAGATTGGA 540 consensus_1250#1 GACAACTGCATCTACATCTACCAGTGCACGAAGGTGGCGCACCGGTTTTCCAAGATTGGA 520 ************************************************************ consensus_1250#0 AAGTGCACGGGTCATTCTAGTTTCATATCACATCTCGATTGGTCCAAGGACAGTCAAGTG 600 consensus_1250#1 AAGTGCACGGGTCATTCTAGTTTCATATCACATCTCGATTGGTCCAAGGACAGTCAAGTG 580 ************************************************************ consensus_1250#0 TTGCGATCGAATTCGGGCGACTACGAAATACTATACTGG---- 639 consensus_1250#1 TTGCGATCGAACTCGGGCGACTACGAAATACTATACTGGAATC 623 *********** *************************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||