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Anopheles gambiae
cluster # 1258 cluster # 1258       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1258#0 length = 693 sequences # 1  
consensus_1258#1 length = 655 sequences # 1  

consensusID : consensus_1258#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 693
fasta sequence
                              [CCGCTCACTCTTTAAATGGCGCTTCTAGCTAACATTTTTTCCTTAGCAAAAGTTGACTACTACTAACACACTATCACATTCTTGCAATGAGAGTAACTCAACAATAACTCCGCGAGTAACGTGTCTTTGAACGTTTTTCCTATCCTCGACATACTACGAAGCCACTTAGTAGGGTTGCCATTGTTCAGTAGGACTGCCATTGTAATTCATTCAACTCATATCATTCTCAACATTCAATAGTTTGGAACGACAGCTAGAGAGCTCCAATAGAGAACGGGGAACTGGGAAAAGAATGCTTAGGTATCATCTGTTTACGTCTGTAAAGCAGGATCATCGTGTGAACTTCCCATGCATCAGGCGCTAGCAGAGGCAGAAGCTATCGGTATCGGTTCATCGAACAGCAACTACCACGAGATAGAAATTCTTCAAGCTACATCAGTAACAGGTTGGTGCAAAGGTAAACGAAAAGTAATTACTTCACTACGAATGTGCACGGTGTGTGAGTTTGCAAGAGAGTGGTTTTATGGTTTTTTCCCCCAAGAGCACGTGTTTCAAGTGTGTGCGATTTATCTCTGGAGTGTCACAAAGTTGTGCTTTGAGCAATGCCCATTCATATGGCATGAATAGAGGAAATGTTTCTAATCCGTTCTCTCAGGTTTTTGGCGTTTGACAGGTGTCTTGATATCTGTCAAA]

[+] EMBL BM612050             [CCGCTCACTCTTTAAATGGCGCTTCTAGCTAACATTTTTTCCTTAGCAAAAGTTGACTACTACTAACACACTATCACATTCTTGCAATGAGAGTAACTCAACAATAACTCCGCGAGTAACGTGTCTTTGAACGTTTTTCCTATCCTCGACATACTACGAAGCCACTTAGTAGGGTTGCCATTGTTCAGTAGGACTGCCATTGTAATTCATTCAACTCATATCATTCTCAACATTCAATAGTTTGGAACGACAGCTAGAGAGCTCCAATAGAGAACGGGGAACTGGGAAAAGAATGCTTAGGTATCATCTGTTTACGTCTGTAAAGCAGGATCATCGTGTGAACTTCCCATGCATCAGGCGCTAGCAGAGGCAGAAGCTATCGGTATCGGTTCATCGAACAGCAACTACCACGAGATAGAAATTCTTCAAGCTACATCAGTAACAGGTTGGTGCAAAGGTAAACGAAAAGTAATTACTTCACTACGAATGTGCACGGTGTGTGAGTTTGCAAGAGAGTGGTTTTATGGTTTTTTCCCCCAAGAGCACGTGTTTCAAGTGTGTGCGATTTATCTCTGGAGTGTCACAAAGTTGTGCTTTGAGCAATGCCCATTCATATGGCATGAATAGAGGAAATGTTTCTAATCCGTTCTCTCAGGTTTTTGGCGTTTGACAGGTGTCTTGATATCTGTCAAA]


>consensus_1258#0 CCGCTCACTCTTTAAATGGCGCTTCTAGCTAACATTTTTTCCTTAGCAAAAGTTGACTAC TACTAACACACTATCACATTCTTGCAATGAGAGTAACTCAACAATAACTCCGCGAGTAAC GTGTCTTTGAACGTTTTTCCTATCCTCGACATACTACGAAGCCACTTAGTAGGGTTGCCA TTGTTCAGTAGGACTGCCATTGTAATTCATTCAACTCATATCATTCTCAACATTCAATAG TTTGGAACGACAGCTAGAGAGCTCCAATAGAGAACGGGGAACTGGGAAAAGAATGCTTAG GTATCATCTGTTTACGTCTGTAAAGCAGGATCATCGTGTGAACTTCCCATGCATCAGGCG CTAGCAGAGGCAGAAGCTATCGGTATCGGTTCATCGAACAGCAACTACCACGAGATAGAA ATTCTTCAAGCTACATCAGTAACAGGTTGGTGCAAAGGTAAACGAAAAGTAATTACTTCA CTACGAATGTGCACGGTGTGTGAGTTTGCAAGAGAGTGGTTTTATGGTTTTTTCCCCCAA GAGCACGTGTTTCAAGTGTGTGCGATTTATCTCTGGAGTGTCACAAAGTTGTGCTTTGAG CAATGCCCATTCATATGGCATGAATAGAGGAAATGTTTCTAATCCGTTCTCTCAGGTTTT TGGCGTTTGACAGGTGTCTTGATATCTGTCAAA



consensusID : consensus_1258#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 655
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGGCCACATAGTAGGGTTGCCATTGTTCAGTAGGACTGCCATTGTAATTCATTCAACTCATATCATTCTCAACATTCAATAGTTTGGAACGACAGCTAGAGAGCTCCAATAGAGAACGGGGAACTGGGAAAAGAATGCTTAGGTATCATCTGTTTACGTCTGTAAAGCAGGATCATCGTGTGAACTTCCCATGCATCAGGCGCTAGCAGAGGCAGAAGCTATCGGTATCGGTTCATCGAACAGCAACTACCACGAGATAGAAATTCTTCAAGCTACATCAGTAACAGGTTGGTGCAAAGGTAAACGAAAAGTAATTACTTCACTACGAATGTGCACGGTGTGTGAGTTTGCAAGAGAGTGGTTTTATGGTTTTTTCCCCCAAGAGCACGTGTTTCAAGTGTGTGCGATTTATCTCTGGAGTGTCACAAAGTTGTGCTTTGAGCAATGCCCATTCATATGGCATGAATAGAGGAAATGTTTCTAATCCGTTCTCTCAGGTTTTTGGCGTTTGACAGGTGTCTTGATATCTGTCAAACTTTCAGCATAACTTATGGTGGATAAATGTGTGTGCTTGGTGGAAGAAGAATGTCCAGAGCAATAAGCAATTGGAGCGATCTTACAGCAGCGATA]

[+] EMBL BM613280             [CCGCCCACGCGTCCGCCCACGCGTCCGGCCACATAGTAGGGTTGCCATTGTTCAGTAGGACTGCCATTGTAATTCATTCAACTCATATCATTCTCAACATTCAATAGTTTGGAACGACAGCTAGAGAGCTCCAATAGAGAACGGGGAACTGGGAAAAGAATGCTTAGGTATCATCTGTTTACGTCTGTAAAGCAGGATCATCGTGTGAACTTCCCATGCATCAGGCGCTAGCAGAGGCAGAAGCTATCGGTATCGGTTCATCGAACAGCAACTACCACGAGATAGAAATTCTTCAAGCTACATCAGTAACAGGTTGGTGCAAAGGTAAACGAAAAGTAATTACTTCACTACGAATGTGCACGGTGTGTGAGTTTGCAAGAGAGTGGTTTTATGGTTTTTTCCCCCAAGAGCACGTGTTTCAAGTGTGTGCGATTTATCTCTGGAGTGTCACAAAGTTGTGCTTTGAGCAATGCCCATTCATATGGCATGAATAGAGGAAATGTTTCTAATCCGTTCTCTCAGGTTTTTGGCGTTTGACAGGTGTCTTGATATCTGTCAAACTTTCAGCATAACTTATGGTGGATAAATGTGTGTGCTTGGTGGAAGAAGAATGTCCAGAGCAATAAGCAATTGGAGCGATCTTACAGCAGCGATA]


>consensus_1258#1 CCGCCCACGCGTCCGCCCACGCGTCCGGCCACATAGTAGGGTTGCCATTGTTCAGTAGGA CTGCCATTGTAATTCATTCAACTCATATCATTCTCAACATTCAATAGTTTGGAACGACAG CTAGAGAGCTCCAATAGAGAACGGGGAACTGGGAAAAGAATGCTTAGGTATCATCTGTTT ACGTCTGTAAAGCAGGATCATCGTGTGAACTTCCCATGCATCAGGCGCTAGCAGAGGCAG AAGCTATCGGTATCGGTTCATCGAACAGCAACTACCACGAGATAGAAATTCTTCAAGCTA CATCAGTAACAGGTTGGTGCAAAGGTAAACGAAAAGTAATTACTTCACTACGAATGTGCA CGGTGTGTGAGTTTGCAAGAGAGTGGTTTTATGGTTTTTTCCCCCAAGAGCACGTGTTTC AAGTGTGTGCGATTTATCTCTGGAGTGTCACAAAGTTGTGCTTTGAGCAATGCCCATTCA TATGGCATGAATAGAGGAAATGTTTCTAATCCGTTCTCTCAGGTTTTTGGCGTTTGACAG GTGTCTTGATATCTGTCAAACTTTCAGCATAACTTATGGTGGATAAATGTGTGTGCTTGG TGGAAGAAGAATGTCCAGAGCAATAAGCAATTGGAGCGATCTTACAGCAGCGATA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1258#0      CCGCTCACTCTTTAAATGGCGCTTCTAGCTAACATTTTTTCCTTAGCAAAAGTTGACTAC 60
consensus_1258#1      ------------------------------------------------------------
                                                                                  

consensus_1258#0      TACTAACACACTATCACATTCTTGCAATGAGAGTAACTCAACAATAACTCCGCGAGTAAC 120
consensus_1258#1      ------------------------------------------------------------
                                                                                  

consensus_1258#0      GTGTCTTTGAACGTTTTTCCTATCCTCGACATAC-TACGAAGCCACTTAGTAGGGTTGCC 179
consensus_1258#1      --------------CCGCCCACGCGTCCGCCCACGCGTCCGGCCACATAGTAGGGTTGCC 46
                                        **   * **  *  **       ***** *************

consensus_1258#0      ATTGTTCAGTAGGACTGCCATTGTAATTCATTCAACTCATATCATTCTCAACATTCAATA 239
consensus_1258#1      ATTGTTCAGTAGGACTGCCATTGTAATTCATTCAACTCATATCATTCTCAACATTCAATA 106
                      ************************************************************

consensus_1258#0      GTTTGGAACGACAGCTAGAGAGCTCCAATAGAGAACGGGGAACTGGGAAAAGAATGCTTA 299
consensus_1258#1      GTTTGGAACGACAGCTAGAGAGCTCCAATAGAGAACGGGGAACTGGGAAAAGAATGCTTA 166
                      ************************************************************

consensus_1258#0      GGTATCATCTGTTTACGTCTGTAAAGCAGGATCATCGTGTGAACTTCCCATGCATCAGGC 359
consensus_1258#1      GGTATCATCTGTTTACGTCTGTAAAGCAGGATCATCGTGTGAACTTCCCATGCATCAGGC 226
                      ************************************************************

consensus_1258#0      GCTAGCAGAGGCAGAAGCTATCGGTATCGGTTCATCGAACAGCAACTACCACGAGATAGA 419
consensus_1258#1      GCTAGCAGAGGCAGAAGCTATCGGTATCGGTTCATCGAACAGCAACTACCACGAGATAGA 286
                      ************************************************************

consensus_1258#0      AATTCTTCAAGCTACATCAGTAACAGGTTGGTGCAAAGGTAAACGAAAAGTAATTACTTC 479
consensus_1258#1      AATTCTTCAAGCTACATCAGTAACAGGTTGGTGCAAAGGTAAACGAAAAGTAATTACTTC 346
                      ************************************************************

consensus_1258#0      ACTACGAATGTGCACGGTGTGTGAGTTTGCAAGAGAGTGGTTTTATGGTTTTTTCCCCCA 539
consensus_1258#1      ACTACGAATGTGCACGGTGTGTGAGTTTGCAAGAGAGTGGTTTTATGGTTTTTTCCCCCA 406
                      ************************************************************

consensus_1258#0      AGAGCACGTGTTTCAAGTGTGTGCGATTTATCTCTGGAGTGTCACAAAGTTGTGCTTTGA 599
consensus_1258#1      AGAGCACGTGTTTCAAGTGTGTGCGATTTATCTCTGGAGTGTCACAAAGTTGTGCTTTGA 466
                      ************************************************************

consensus_1258#0      GCAATGCCCATTCATATGGCATGAATAGAGGAAATGTTTCTAATCCGTTCTCTCAGGTTT 659
consensus_1258#1      GCAATGCCCATTCATATGGCATGAATAGAGGAAATGTTTCTAATCCGTTCTCTCAGGTTT 526
                      ************************************************************

consensus_1258#0      TTGGCGTTTGACAGGTGTCTTGATATCTGTCAAA-------------------------- 693
consensus_1258#1      TTGGCGTTTGACAGGTGTCTTGATATCTGTCAAACTTTCAGCATAACTTATGGTGGATAA 586
                      **********************************                          

consensus_1258#0      ------------------------------------------------------------
consensus_1258#1      ATGTGTGTGCTTGGTGGAAGAAGAATGTCCAGAGCAATAAGCAATTGGAGCGATCTTACA 646
                                                                                  

consensus_1258#0      ---------
consensus_1258#1      GCAGCGATA 655
                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)