These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1258#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [CCGCTCACTCTTTAAATGGCGCTTCTAGCTAACATTTTTTCCTTAGCAAAAGTTGACTACTACTAACACACTATCACATTCTTGCAATGAGAGTAACTCAACAATAACTCCGCGAGTAACGTGTCTTTGAACGTTTTTCCTATCCTCGACATACTACGAAGCCACTTAGTAGGGTTGCCATTGTTCAGTAGGACTGCCATTGTAATTCATTCAACTCATATCATTCTCAACATTCAATAGTTTGGAACGACAGCTAGAGAGCTCCAATAGAGAACGGGGAACTGGGAAAAGAATGCTTAGGTATCATCTGTTTACGTCTGTAAAGCAGGATCATCGTGTGAACTTCCCATGCATCAGGCGCTAGCAGAGGCAGAAGCTATCGGTATCGGTTCATCGAACAGCAACTACCACGAGATAGAAATTCTTCAAGCTACATCAGTAACAGGTTGGTGCAAAGGTAAACGAAAAGTAATTACTTCACTACGAATGTGCACGGTGTGTGAGTTTGCAAGAGAGTGGTTTTATGGTTTTTTCCCCCAAGAGCACGTGTTTCAAGTGTGTGCGATTTATCTCTGGAGTGTCACAAAGTTGTGCTTTGAGCAATGCCCATTCATATGGCATGAATAGAGGAAATGTTTCTAATCCGTTCTCTCAGGTTTTTGGCGTTTGACAGGTGTCTTGATATCTGTCAAA] [+] EMBL BM612050 [CCGCTCACTCTTTAAATGGCGCTTCTAGCTAACATTTTTTCCTTAGCAAAAGTTGACTACTACTAACACACTATCACATTCTTGCAATGAGAGTAACTCAACAATAACTCCGCGAGTAACGTGTCTTTGAACGTTTTTCCTATCCTCGACATACTACGAAGCCACTTAGTAGGGTTGCCATTGTTCAGTAGGACTGCCATTGTAATTCATTCAACTCATATCATTCTCAACATTCAATAGTTTGGAACGACAGCTAGAGAGCTCCAATAGAGAACGGGGAACTGGGAAAAGAATGCTTAGGTATCATCTGTTTACGTCTGTAAAGCAGGATCATCGTGTGAACTTCCCATGCATCAGGCGCTAGCAGAGGCAGAAGCTATCGGTATCGGTTCATCGAACAGCAACTACCACGAGATAGAAATTCTTCAAGCTACATCAGTAACAGGTTGGTGCAAAGGTAAACGAAAAGTAATTACTTCACTACGAATGTGCACGGTGTGTGAGTTTGCAAGAGAGTGGTTTTATGGTTTTTTCCCCCAAGAGCACGTGTTTCAAGTGTGTGCGATTTATCTCTGGAGTGTCACAAAGTTGTGCTTTGAGCAATGCCCATTCATATGGCATGAATAGAGGAAATGTTTCTAATCCGTTCTCTCAGGTTTTTGGCGTTTGACAGGTGTCTTGATATCTGTCAAA] consensusID : consensus_1258#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGCCACATAGTAGGGTTGCCATTGTTCAGTAGGACTGCCATTGTAATTCATTCAACTCATATCATTCTCAACATTCAATAGTTTGGAACGACAGCTAGAGAGCTCCAATAGAGAACGGGGAACTGGGAAAAGAATGCTTAGGTATCATCTGTTTACGTCTGTAAAGCAGGATCATCGTGTGAACTTCCCATGCATCAGGCGCTAGCAGAGGCAGAAGCTATCGGTATCGGTTCATCGAACAGCAACTACCACGAGATAGAAATTCTTCAAGCTACATCAGTAACAGGTTGGTGCAAAGGTAAACGAAAAGTAATTACTTCACTACGAATGTGCACGGTGTGTGAGTTTGCAAGAGAGTGGTTTTATGGTTTTTTCCCCCAAGAGCACGTGTTTCAAGTGTGTGCGATTTATCTCTGGAGTGTCACAAAGTTGTGCTTTGAGCAATGCCCATTCATATGGCATGAATAGAGGAAATGTTTCTAATCCGTTCTCTCAGGTTTTTGGCGTTTGACAGGTGTCTTGATATCTGTCAAACTTTCAGCATAACTTATGGTGGATAAATGTGTGTGCTTGGTGGAAGAAGAATGTCCAGAGCAATAAGCAATTGGAGCGATCTTACAGCAGCGATA] [+] EMBL BM613280 [CCGCCCACGCGTCCGCCCACGCGTCCGGCCACATAGTAGGGTTGCCATTGTTCAGTAGGACTGCCATTGTAATTCATTCAACTCATATCATTCTCAACATTCAATAGTTTGGAACGACAGCTAGAGAGCTCCAATAGAGAACGGGGAACTGGGAAAAGAATGCTTAGGTATCATCTGTTTACGTCTGTAAAGCAGGATCATCGTGTGAACTTCCCATGCATCAGGCGCTAGCAGAGGCAGAAGCTATCGGTATCGGTTCATCGAACAGCAACTACCACGAGATAGAAATTCTTCAAGCTACATCAGTAACAGGTTGGTGCAAAGGTAAACGAAAAGTAATTACTTCACTACGAATGTGCACGGTGTGTGAGTTTGCAAGAGAGTGGTTTTATGGTTTTTTCCCCCAAGAGCACGTGTTTCAAGTGTGTGCGATTTATCTCTGGAGTGTCACAAAGTTGTGCTTTGAGCAATGCCCATTCATATGGCATGAATAGAGGAAATGTTTCTAATCCGTTCTCTCAGGTTTTTGGCGTTTGACAGGTGTCTTGATATCTGTCAAACTTTCAGCATAACTTATGGTGGATAAATGTGTGTGCTTGGTGGAAGAAGAATGTCCAGAGCAATAAGCAATTGGAGCGATCTTACAGCAGCGATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1258#0 CCGCTCACTCTTTAAATGGCGCTTCTAGCTAACATTTTTTCCTTAGCAAAAGTTGACTAC 60 consensus_1258#1 ------------------------------------------------------------ consensus_1258#0 TACTAACACACTATCACATTCTTGCAATGAGAGTAACTCAACAATAACTCCGCGAGTAAC 120 consensus_1258#1 ------------------------------------------------------------ consensus_1258#0 GTGTCTTTGAACGTTTTTCCTATCCTCGACATAC-TACGAAGCCACTTAGTAGGGTTGCC 179 consensus_1258#1 --------------CCGCCCACGCGTCCGCCCACGCGTCCGGCCACATAGTAGGGTTGCC 46 ** * ** * ** ***** ************* consensus_1258#0 ATTGTTCAGTAGGACTGCCATTGTAATTCATTCAACTCATATCATTCTCAACATTCAATA 239 consensus_1258#1 ATTGTTCAGTAGGACTGCCATTGTAATTCATTCAACTCATATCATTCTCAACATTCAATA 106 ************************************************************ consensus_1258#0 GTTTGGAACGACAGCTAGAGAGCTCCAATAGAGAACGGGGAACTGGGAAAAGAATGCTTA 299 consensus_1258#1 GTTTGGAACGACAGCTAGAGAGCTCCAATAGAGAACGGGGAACTGGGAAAAGAATGCTTA 166 ************************************************************ consensus_1258#0 GGTATCATCTGTTTACGTCTGTAAAGCAGGATCATCGTGTGAACTTCCCATGCATCAGGC 359 consensus_1258#1 GGTATCATCTGTTTACGTCTGTAAAGCAGGATCATCGTGTGAACTTCCCATGCATCAGGC 226 ************************************************************ consensus_1258#0 GCTAGCAGAGGCAGAAGCTATCGGTATCGGTTCATCGAACAGCAACTACCACGAGATAGA 419 consensus_1258#1 GCTAGCAGAGGCAGAAGCTATCGGTATCGGTTCATCGAACAGCAACTACCACGAGATAGA 286 ************************************************************ consensus_1258#0 AATTCTTCAAGCTACATCAGTAACAGGTTGGTGCAAAGGTAAACGAAAAGTAATTACTTC 479 consensus_1258#1 AATTCTTCAAGCTACATCAGTAACAGGTTGGTGCAAAGGTAAACGAAAAGTAATTACTTC 346 ************************************************************ consensus_1258#0 ACTACGAATGTGCACGGTGTGTGAGTTTGCAAGAGAGTGGTTTTATGGTTTTTTCCCCCA 539 consensus_1258#1 ACTACGAATGTGCACGGTGTGTGAGTTTGCAAGAGAGTGGTTTTATGGTTTTTTCCCCCA 406 ************************************************************ consensus_1258#0 AGAGCACGTGTTTCAAGTGTGTGCGATTTATCTCTGGAGTGTCACAAAGTTGTGCTTTGA 599 consensus_1258#1 AGAGCACGTGTTTCAAGTGTGTGCGATTTATCTCTGGAGTGTCACAAAGTTGTGCTTTGA 466 ************************************************************ consensus_1258#0 GCAATGCCCATTCATATGGCATGAATAGAGGAAATGTTTCTAATCCGTTCTCTCAGGTTT 659 consensus_1258#1 GCAATGCCCATTCATATGGCATGAATAGAGGAAATGTTTCTAATCCGTTCTCTCAGGTTT 526 ************************************************************ consensus_1258#0 TTGGCGTTTGACAGGTGTCTTGATATCTGTCAAA-------------------------- 693 consensus_1258#1 TTGGCGTTTGACAGGTGTCTTGATATCTGTCAAACTTTCAGCATAACTTATGGTGGATAA 586 ********************************** consensus_1258#0 ------------------------------------------------------------ consensus_1258#1 ATGTGTGTGCTTGGTGGAAGAAGAATGTCCAGAGCAATAAGCAATTGGAGCGATCTTACA 646 consensus_1258#0 --------- consensus_1258#1 GCAGCGATA 655 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||