These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1261#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 737 fasta sequence [GTGCAAGTTGCCGTGGCATATAAGGGAATCATCGGCTGTGTTTTTCATCCATCGCTGGAAGTGTTAGTGTCTCCAAAGTGTTGTCGGAAAGTGACTGCAGAAACAAGTGACAACGCTGGTTCGTTTTTAGTGTGGCTGTGAAGTGAAAATATCTCCAACTCGGTTTGTGTGTGTTTCTTGTGCGAAAAGTGACTGACTGTGCAGCTTCTGCATACGATCACGTGCGTCCTCTAGATCGATTTTTTGCCATCAAAAAGGGTCGGTCGAGTTGAAGTCAGACAAAAACACAACCCTCCTCCCCCTAAAACAGCACAAACATGGGAACGAAGATCGAGTACGTTGACTCGAGTCACATGTACGCGACCAACTACATCCGCAACTCGAAGGCGATCGCCGTCCTGTGGGCGATCTTCAGCATTTGCTACGCGATCATCAGTGTCGTCGCGTTCGTAACACCAGAATGGGTCGGCGATGCAGATTCCGACATTGGCGGGCGTCTCGGGCTGTGGCAGGTGTGCCAGAAAGACGATCTTACCGATAGCTGTACCGGCCGGCTGGAAGAACTGCTGGAAATGCAATCCATCGCGTTTCAGGTTGCAACAGTGTTTTGCGGGCTGGCTGTGGCCACTTCCGTGCTGGCGATCTGCTGCCTACTGCTGATGGTGTTCATGAAGTCAACGACCGTCTTTCACATCTGCGGCTGGATGCAGATGCTTTCCGCTCTCTGCATGGTGATT] [+] EMBL BX625331 [GTGCAAGTTGCCGTGGCATATAAGGGAATCATCGGCTGTGTTTTTCATCCATCGCTGGAAGTGTTAGTGTCTCCAAAGTGTTGTCGGAAAGTGACTGCAGAAACAAGTGACAACGCTGGTTCGTTTTTAGTGTGGCTGTGAAGTGAAAATATCTCCAACTCGGTTTGTGTGTGTTTCTTGTGCGAAAAGTGACTGACTGTGCAGCTTCTGCATACGATCACGTGCGTCCTCTAGATCGATTTTTTGCCATCAAAAAGGGTCGGTCGAGTTGAAGTCAGACAAAAACACAACCCTCCTCCCCCTAAAACAGCACAAACATGGGAACGAAGATCGAGTACGTTGACTCGAGTCACATGTACGCGACCAACTACATCCGCAACTCGAAGGCGATCGCCGTCCTGTGGGCGATCTTCAGCATTTGCTACGCGATCATCAGTGTCGTCGCGTTCGTAACACCAGAATGGGTCGGCGATGCAGATTCCGACATTGGCGGGCGTCTCGGGCTGTGGCAGGTGTGCCAGAAAGACGATCTTACCGATAGCTGTACCGGCCGGCTGGAAGAACTGCTGGAAATGCAATCCATCGCGTTTCAGGTTGCAACAGTGTTTTGCGGGCTGGCTGTGGCCACTTCCGTGCTGGCGATCTGCTGCCTACTGCTGATGGTGTTCATGAAGTCAACGACCGTCTTTCACATCTGCGGCTGGATGCAGATGCTTTCCGCTCTCTGCATGGTGATT] consensusID : consensus_1261#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 464 fasta sequence [AGATCGCCCCAGGTNCCGTGGCATATTAAGGGAATCATCGGCTGTGTTTTTCATCCACCGCTGCAGTGTTAGTGTCTCCAAAGTGTCGTCGGAAAGTGACTGCACAAACAAGTGACAACGCAGGTTCGTTTTTAGTGTGGCTGTGAAGTGAAAATATCTCCAACTCGGTTTGTGTGTGTTTCTTGTGCGAAAAGTGACTGACTAACTGCCGCTTCTGCATACGATCACGTGCGTCCTCTAGATCGATTTTTTGCCATCAAAAAGGTACAAAAACACAAACCCCCCCCCCCCCTAAAACAGACAAACATGGGAACGAAGATCGAGTACGTTGACTCGAGTCACATGTACGCGACAACTACATCCGAACTCGAAGGCGATCGCCGTCCTGTGGGCGATCTTCAGCATTTGCTACGCGATCATCAGTGTCGTCGCGTTCGTAACACCAGAATGGGTCGGGATGCAAT] [+] EMBL AL932698 [AGATCGCCCCAGGTNCCGTGGCATATTAAGGGAATCATCGGCTGTGTTTTTCATCCACCGCTGCAGTGTTAGTGTCTCCAAAGTGTCGTCGGAAAGTGACTGCACAAACAAGTGACAACGCAGGTTCGTTTTTAGTGTGGCTGTGAAGTGAAAATATCTCCAACTCGGTTTGTGTGTGTTTCTTGTGCGAAAAGTGACTGACTAACTGCCGCTTCTGCATACGATCACGTGCGTCCTCTAGATCGATTTTTTGCCATCAAAAAGGTACAAAAACACAAACCCCCCCCCCCCCTAAAACAGACAAACATGGGAACGAAGATCGAGTACGTTGACTCGAGTCACATGTACGCGACAACTACATCCGAACTCGAAGGCGATCGCCGTCCTGTGGGCGATCTTCAGCATTTGCTACGCGATCATCAGTGTCGTCGCGTTCGTAACACCAGAATGGGTCGGGATGCAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1261#0 -----GTGCAAGTTGCCGTGGCATAT-AAGGGAATCATCGGCTGTGTTTTTCATCCATCG 54 consensus_1261#1 AGATCGCCCCAGGTNCCGTGGCATATTAAGGGAATCATCGGCTGTGTTTTTCATCCACCG 60 * * ** * *********** ****************************** ** consensus_1261#0 CTGGAAGTGTTAGTGTCTCCAAAGTGTTGTCGGAAAGTGACTGCAGAAACAAGTGACAAC 114 consensus_1261#1 CTGCA-GTGTTAGTGTCTCCAAAGTGTCGTCGGAAAGTGACTGCACAAACAAGTGACAAC 119 *** * ********************* ***************** ************** consensus_1261#0 GCTGGTTCGTTTTTAGTGTGGCTGTGAAGTGAAAATATCTCCAACTCGGTTTGTGTGTGT 174 consensus_1261#1 GCAGGTTCGTTTTTAGTGTGGCTGTGAAGTGAAAATATCTCCAACTCGGTTTGTGTGTGT 179 ** ********************************************************* consensus_1261#0 TTCTTGTGCGAAAAGTGACTGACTG--TGCAGCTTCTGCATACGATCACGTGCGTCCTCT 232 consensus_1261#1 TTCTTGTGCGAAAAGTGACTGACTAACTGCCGCTTCTGCATACGATCACGTGCGTCCTCT 239 ************************ *** ***************************** consensus_1261#0 AGATCGATTTTTTGCCATCAAAAAGGGTCGGTCGAGTTGAAGTCAGACAAAAACACAACC 292 consensus_1261#1 AGATCGATTTTTTGCCATCAAAAAGG-----------------TACAAAAACACAAACCC 282 ************************** * * *** *** * ** consensus_1261#0 CTCCTCCCCCTAAAACAGCACAAACATGGGAACGAAGATCGAGTACGTTGACTCGAGTCA 352 consensus_1261#1 CCCCCCCCCCTAAAACAG-ACAAACATGGGAACGAAGATCGAGTACGTTGACTCGAGTCA 341 * ** ************* ***************************************** consensus_1261#0 CATGTACGCGACCAACTACATCCGCAACTCGAAGGCGATCGCCGTCCTGTGGGCGATCTT 412 consensus_1261#1 CATGTACGCGAC-AACTACATCCG-AACTCGAAGGCGATCGCCGTCCTGTGGGCGATCTT 399 ************ *********** *********************************** consensus_1261#0 CAGCATTTGCTACGCGATCATCAGTGTCGTCGCGTTCGTAACACCAGAATGGGTCGGCGA 472 consensus_1261#1 CAGCATTTGCTACGCGATCATCAGTGTCGTCGCGTTCGTAACACCAGAATGGGTCGG-GA 458 ********************************************************* ** consensus_1261#0 TGCAGATTCCGACATTGGCGGGCGTCTCGGGCTGTGGCAGGTGTGCCAGAAAGACGATCT 532 consensus_1261#1 TGCAAT------------------------------------------------------ 464 **** consensus_1261#0 TACCGATAGCTGTACCGGCCGGCTGGAAGAACTGCTGGAAATGCAATCCATCGCGTTTCA 592 consensus_1261#1 ------------------------------------------------------------ consensus_1261#0 GGTTGCAACAGTGTTTTGCGGGCTGGCTGTGGCCACTTCCGTGCTGGCGATCTGCTGCCT 652 consensus_1261#1 ------------------------------------------------------------ consensus_1261#0 ACTGCTGATGGTGTTCATGAAGTCAACGACCGTCTTTCACATCTGCGGCTGGATGCAGAT 712 consensus_1261#1 ------------------------------------------------------------ consensus_1261#0 GCTTTCCGCTCTCTGCATGGTGATT 737 consensus_1261#1 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||