cluster # 1281

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Anopheles gambiae
cluster # 1281 cluster # 1281 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1281#0 length = 633 sequences # 1

consensus_1281#1 length = 632 sequences # 1

consensusID : consensus_1281#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 633
fasta sequence

                              [CCGAAAAGAGCAAAATATATCTCACATCCCCCTCCCGTCACGATCACGATCGTGCTGCAGAGTGGCGTGAACAACCTCCTCCCTCCGGTACCCATCTCCGTACAACCGGCGCCGGCATCTTTCACACCCCACAGGACGACGATTTCACGTTCAAGGCGAAGCGCGCGAAACTATTCTCAGTTCGGCCTTCGAACACATGCCGGTGTTCGAAATCGGTTGGAGTCGCGCTGATCGGCCCCATTCGAGGGGGCCATGACGCGTTGGCCCGTCCTACTGCTTGCACTGCTCTCGGTGGCGTTCGGTCATGTGCCGGCCGCGGTCGCCCTAGTGCCCGGCCCGAATGGCATCGGTGGCGGCAGTCTCACGCCGAGCGGGTCCGGCGGTGGTACCGGGAGTTCGAGCGCGCCCGAAATCTCTGCCTCGGCCGCCCTTCCCTTCTATCATGACCCGTATCAACCTCAGTCACTGCTGCTGCAGCATCAATCAACGAACCAGCAGCACCAGCAGCACCAGCAACAGCAGCAGCAGTCGCAGCCGCCGCAACAGCAGCAGACACACTCATCCGGCTCGTACATTACGAAGATGCCGGAGAACTCGCCGCACCAGAAGTTCCGCAACAATCGGACGGTGCTG]

[+] EMBL BM617248             [CCGAAAAGAGCAAAATATATCTCACATCCCCCTCCCGTCACGATCACGATCGTGCTGCAGAGTGGCGTGAACAACCTCCTCCCTCCGGTACCCATCTCCGTACAACCGGCGCCGGCATCTTTCACACCCCACAGGACGACGATTTCACGTTCAAGGCGAAGCGCGCGAAACTATTCTCAGTTCGGCCTTCGAACACATGCCGGTGTTCGAAATCGGTTGGAGTCGCGCTGATCGGCCCCATTCGAGGGGGCCATGACGCGTTGGCCCGTCCTACTGCTTGCACTGCTCTCGGTGGCGTTCGGTCATGTGCCGGCCGCGGTCGCCCTAGTGCCCGGCCCGAATGGCATCGGTGGCGGCAGTCTCACGCCGAGCGGGTCCGGCGGTGGTACCGGGAGTTCGAGCGCGCCCGAAATCTCTGCCTCGGCCGCCCTTCCCTTCTATCATGACCCGTATCAACCTCAGTCACTGCTGCTGCAGCATCAATCAACGAACCAGCAGCACCAGCAGCACCAGCAACAGCAGCAGCAGTCGCAGCCGCCGCAACAGCAGCAGACACACTCATCCGGCTCGTACATTACGAAGATGCCGGAGAACTCGCCGCACCAGAAGTTCCGCAACAATCGGACGGTGCTG]




>consensus_1281#0
CCGAAAAGAGCAAAATATATCTCACATCCCCCTCCCGTCACGATCACGATCGTGCTGCAG
AGTGGCGTGAACAACCTCCTCCCTCCGGTACCCATCTCCGTACAACCGGCGCCGGCATCT
TTCACACCCCACAGGACGACGATTTCACGTTCAAGGCGAAGCGCGCGAAACTATTCTCAG
TTCGGCCTTCGAACACATGCCGGTGTTCGAAATCGGTTGGAGTCGCGCTGATCGGCCCCA
TTCGAGGGGGCCATGACGCGTTGGCCCGTCCTACTGCTTGCACTGCTCTCGGTGGCGTTC
GGTCATGTGCCGGCCGCGGTCGCCCTAGTGCCCGGCCCGAATGGCATCGGTGGCGGCAGT
CTCACGCCGAGCGGGTCCGGCGGTGGTACCGGGAGTTCGAGCGCGCCCGAAATCTCTGCC
TCGGCCGCCCTTCCCTTCTATCATGACCCGTATCAACCTCAGTCACTGCTGCTGCAGCAT
CAATCAACGAACCAGCAGCACCAGCAGCACCAGCAACAGCAGCAGCAGTCGCAGCCGCCG
CAACAGCAGCAGACACACTCATCCGGCTCGTACATTACGAAGATGCCGGAGAACTCGCCG
CACCAGAAGTTCCGCAACAATCGGACGGTGCTG

consensusID : consensus_1281#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 632
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGAAATATATCTCACATCCCCCTCCCGTCACGATCACGATCGTGCTGCAGAGTGGCGTGAACAACCTCCTCCCTCCCCTACCCATCTCCGTACAACCGGCGCCGGCATCTTTCACACCCCACAGGACGACGATTTCACGTTCAAGGCGAAGCGCGCGAAACTATTCTCAGTTCGGCCTTCGAACACATGCCGGTGTTCGAAATCGGTTGGAGTCGCGCTGATCGGCCCCATTCGAGGGGGCCATGACGCGTTGGCCCGTCCTACTGCTTGCACTGCTCTCGGTGGCGTTCGGTCATGTGCCGGCCGCGGTCGCCCTAGTGCCCGGCCCGAATGGCATCGGTGGCGGCAGTCTCACGCCGAGCGGGTCCGGCGGTGGTACCGGGAGTTCGAGCGCGCCCGAAATCTCTGCCTCGGCCGCCCTTCCCTTCTATCATGACCCGTATCAACCTCAGTCACTGCTGCTGCAGCATCAATCAACGAACCAGCAGCACCAGCAGCACCAGCAACAGCAGCAGCAGTCGCAGCCGCCGCAACAGCAGCAGACACACTCATCCGGCTCGTACATTACGAAGATGCCGGAGAACTCGCCGCACCAGAAGTTCCGCAA]

[+] EMBL BM592061             [CCGCCCACGCGTCCGCCCACGCGTCCGAAATATATCTCACATCCCCCTCCCGTCACGATCACGATCGTGCTGCAGAGTGGCGTGAACAACCTCCTCCCTCCCCTACCCATCTCCGTACAACCGGCGCCGGCATCTTTCACACCCCACAGGACGACGATTTCACGTTCAAGGCGAAGCGCGCGAAACTATTCTCAGTTCGGCCTTCGAACACATGCCGGTGTTCGAAATCGGTTGGAGTCGCGCTGATCGGCCCCATTCGAGGGGGCCATGACGCGTTGGCCCGTCCTACTGCTTGCACTGCTCTCGGTGGCGTTCGGTCATGTGCCGGCCGCGGTCGCCCTAGTGCCCGGCCCGAATGGCATCGGTGGCGGCAGTCTCACGCCGAGCGGGTCCGGCGGTGGTACCGGGAGTTCGAGCGCGCCCGAAATCTCTGCCTCGGCCGCCCTTCCCTTCTATCATGACCCGTATCAACCTCAGTCACTGCTGCTGCAGCATCAATCAACGAACCAGCAGCACCAGCAGCACCAGCAACAGCAGCAGCAGTCGCAGCCGCCGCAACAGCAGCAGACACACTCATCCGGCTCGTACATTACGAAGATGCCGGAGAACTCGCCGCACCAGAAGTTCCGCAA]




>consensus_1281#1
CCGCCCACGCGTCCGCCCACGCGTCCGAAATATATCTCACATCCCCCTCCCGTCACGATC
ACGATCGTGCTGCAGAGTGGCGTGAACAACCTCCTCCCTCCCCTACCCATCTCCGTACAA
CCGGCGCCGGCATCTTTCACACCCCACAGGACGACGATTTCACGTTCAAGGCGAAGCGCG
CGAAACTATTCTCAGTTCGGCCTTCGAACACATGCCGGTGTTCGAAATCGGTTGGAGTCG
CGCTGATCGGCCCCATTCGAGGGGGCCATGACGCGTTGGCCCGTCCTACTGCTTGCACTG
CTCTCGGTGGCGTTCGGTCATGTGCCGGCCGCGGTCGCCCTAGTGCCCGGCCCGAATGGC
ATCGGTGGCGGCAGTCTCACGCCGAGCGGGTCCGGCGGTGGTACCGGGAGTTCGAGCGCG
CCCGAAATCTCTGCCTCGGCCGCCCTTCCCTTCTATCATGACCCGTATCAACCTCAGTCA
CTGCTGCTGCAGCATCAATCAACGAACCAGCAGCACCAGCAGCACCAGCAACAGCAGCAG
CAGTCGCAGCCGCCGCAACAGCAGCAGACACACTCATCCGGCTCGTACATTACGAAGATG
CCGGAGAACTCGCCGCACCAGAAGTTCCGCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1281#0      ---------------CCGAAAAGAGCAAAATATATCTCACATCCCCCTCCCGTCACGATC 45
consensus_1281#1      CCGCCCACGCGTCCGCCCACGCGTCCGAAATATATCTCACATCCCCCTCCCGTCACGATC 60
                                     ** *   *  * *********************************

consensus_1281#0      ACGATCGTGCTGCAGAGTGGCGTGAACAACCTCCTCCCTCCGGTACCCATCTCCGTACAA 105
consensus_1281#1      ACGATCGTGCTGCAGAGTGGCGTGAACAACCTCCTCCCTCCCCTACCCATCTCCGTACAA 120
                      *****************************************  *****************

consensus_1281#0      CCGGCGCCGGCATCTTTCACACCCCACAGGACGACGATTTCACGTTCAAGGCGAAGCGCG 165
consensus_1281#1      CCGGCGCCGGCATCTTTCACACCCCACAGGACGACGATTTCACGTTCAAGGCGAAGCGCG 180
                      ************************************************************

consensus_1281#0      CGAAACTATTCTCAGTTCGGCCTTCGAACACATGCCGGTGTTCGAAATCGGTTGGAGTCG 225
consensus_1281#1      CGAAACTATTCTCAGTTCGGCCTTCGAACACATGCCGGTGTTCGAAATCGGTTGGAGTCG 240
                      ************************************************************

consensus_1281#0      CGCTGATCGGCCCCATTCGAGGGGGCCATGACGCGTTGGCCCGTCCTACTGCTTGCACTG 285
consensus_1281#1      CGCTGATCGGCCCCATTCGAGGGGGCCATGACGCGTTGGCCCGTCCTACTGCTTGCACTG 300
                      ************************************************************

consensus_1281#0      CTCTCGGTGGCGTTCGGTCATGTGCCGGCCGCGGTCGCCCTAGTGCCCGGCCCGAATGGC 345
consensus_1281#1      CTCTCGGTGGCGTTCGGTCATGTGCCGGCCGCGGTCGCCCTAGTGCCCGGCCCGAATGGC 360
                      ************************************************************

consensus_1281#0      ATCGGTGGCGGCAGTCTCACGCCGAGCGGGTCCGGCGGTGGTACCGGGAGTTCGAGCGCG 405
consensus_1281#1      ATCGGTGGCGGCAGTCTCACGCCGAGCGGGTCCGGCGGTGGTACCGGGAGTTCGAGCGCG 420
                      ************************************************************

consensus_1281#0      CCCGAAATCTCTGCCTCGGCCGCCCTTCCCTTCTATCATGACCCGTATCAACCTCAGTCA 465
consensus_1281#1      CCCGAAATCTCTGCCTCGGCCGCCCTTCCCTTCTATCATGACCCGTATCAACCTCAGTCA 480
                      ************************************************************

consensus_1281#0      CTGCTGCTGCAGCATCAATCAACGAACCAGCAGCACCAGCAGCACCAGCAACAGCAGCAG 525
consensus_1281#1      CTGCTGCTGCAGCATCAATCAACGAACCAGCAGCACCAGCAGCACCAGCAACAGCAGCAG 540
                      ************************************************************

consensus_1281#0      CAGTCGCAGCCGCCGCAACAGCAGCAGACACACTCATCCGGCTCGTACATTACGAAGATG 585
consensus_1281#1      CAGTCGCAGCCGCCGCAACAGCAGCAGACACACTCATCCGGCTCGTACATTACGAAGATG 600
                      ************************************************************

consensus_1281#0      CCGGAGAACTCGCCGCACCAGAAGTTCCGCAACAATCGGACGGTGCTG 633
consensus_1281#1      CCGGAGAACTCGCCGCACCAGAAGTTCCGCAA---------------- 632
                      ********************************