These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1281#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [CCGAAAAGAGCAAAATATATCTCACATCCCCCTCCCGTCACGATCACGATCGTGCTGCAGAGTGGCGTGAACAACCTCCTCCCTCCGGTACCCATCTCCGTACAACCGGCGCCGGCATCTTTCACACCCCACAGGACGACGATTTCACGTTCAAGGCGAAGCGCGCGAAACTATTCTCAGTTCGGCCTTCGAACACATGCCGGTGTTCGAAATCGGTTGGAGTCGCGCTGATCGGCCCCATTCGAGGGGGCCATGACGCGTTGGCCCGTCCTACTGCTTGCACTGCTCTCGGTGGCGTTCGGTCATGTGCCGGCCGCGGTCGCCCTAGTGCCCGGCCCGAATGGCATCGGTGGCGGCAGTCTCACGCCGAGCGGGTCCGGCGGTGGTACCGGGAGTTCGAGCGCGCCCGAAATCTCTGCCTCGGCCGCCCTTCCCTTCTATCATGACCCGTATCAACCTCAGTCACTGCTGCTGCAGCATCAATCAACGAACCAGCAGCACCAGCAGCACCAGCAACAGCAGCAGCAGTCGCAGCCGCCGCAACAGCAGCAGACACACTCATCCGGCTCGTACATTACGAAGATGCCGGAGAACTCGCCGCACCAGAAGTTCCGCAACAATCGGACGGTGCTG] [+] EMBL BM617248 [CCGAAAAGAGCAAAATATATCTCACATCCCCCTCCCGTCACGATCACGATCGTGCTGCAGAGTGGCGTGAACAACCTCCTCCCTCCGGTACCCATCTCCGTACAACCGGCGCCGGCATCTTTCACACCCCACAGGACGACGATTTCACGTTCAAGGCGAAGCGCGCGAAACTATTCTCAGTTCGGCCTTCGAACACATGCCGGTGTTCGAAATCGGTTGGAGTCGCGCTGATCGGCCCCATTCGAGGGGGCCATGACGCGTTGGCCCGTCCTACTGCTTGCACTGCTCTCGGTGGCGTTCGGTCATGTGCCGGCCGCGGTCGCCCTAGTGCCCGGCCCGAATGGCATCGGTGGCGGCAGTCTCACGCCGAGCGGGTCCGGCGGTGGTACCGGGAGTTCGAGCGCGCCCGAAATCTCTGCCTCGGCCGCCCTTCCCTTCTATCATGACCCGTATCAACCTCAGTCACTGCTGCTGCAGCATCAATCAACGAACCAGCAGCACCAGCAGCACCAGCAACAGCAGCAGCAGTCGCAGCCGCCGCAACAGCAGCAGACACACTCATCCGGCTCGTACATTACGAAGATGCCGGAGAACTCGCCGCACCAGAAGTTCCGCAACAATCGGACGGTGCTG] consensusID : consensus_1281#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGAAATATATCTCACATCCCCCTCCCGTCACGATCACGATCGTGCTGCAGAGTGGCGTGAACAACCTCCTCCCTCCCCTACCCATCTCCGTACAACCGGCGCCGGCATCTTTCACACCCCACAGGACGACGATTTCACGTTCAAGGCGAAGCGCGCGAAACTATTCTCAGTTCGGCCTTCGAACACATGCCGGTGTTCGAAATCGGTTGGAGTCGCGCTGATCGGCCCCATTCGAGGGGGCCATGACGCGTTGGCCCGTCCTACTGCTTGCACTGCTCTCGGTGGCGTTCGGTCATGTGCCGGCCGCGGTCGCCCTAGTGCCCGGCCCGAATGGCATCGGTGGCGGCAGTCTCACGCCGAGCGGGTCCGGCGGTGGTACCGGGAGTTCGAGCGCGCCCGAAATCTCTGCCTCGGCCGCCCTTCCCTTCTATCATGACCCGTATCAACCTCAGTCACTGCTGCTGCAGCATCAATCAACGAACCAGCAGCACCAGCAGCACCAGCAACAGCAGCAGCAGTCGCAGCCGCCGCAACAGCAGCAGACACACTCATCCGGCTCGTACATTACGAAGATGCCGGAGAACTCGCCGCACCAGAAGTTCCGCAA] [+] EMBL BM592061 [CCGCCCACGCGTCCGCCCACGCGTCCGAAATATATCTCACATCCCCCTCCCGTCACGATCACGATCGTGCTGCAGAGTGGCGTGAACAACCTCCTCCCTCCCCTACCCATCTCCGTACAACCGGCGCCGGCATCTTTCACACCCCACAGGACGACGATTTCACGTTCAAGGCGAAGCGCGCGAAACTATTCTCAGTTCGGCCTTCGAACACATGCCGGTGTTCGAAATCGGTTGGAGTCGCGCTGATCGGCCCCATTCGAGGGGGCCATGACGCGTTGGCCCGTCCTACTGCTTGCACTGCTCTCGGTGGCGTTCGGTCATGTGCCGGCCGCGGTCGCCCTAGTGCCCGGCCCGAATGGCATCGGTGGCGGCAGTCTCACGCCGAGCGGGTCCGGCGGTGGTACCGGGAGTTCGAGCGCGCCCGAAATCTCTGCCTCGGCCGCCCTTCCCTTCTATCATGACCCGTATCAACCTCAGTCACTGCTGCTGCAGCATCAATCAACGAACCAGCAGCACCAGCAGCACCAGCAACAGCAGCAGCAGTCGCAGCCGCCGCAACAGCAGCAGACACACTCATCCGGCTCGTACATTACGAAGATGCCGGAGAACTCGCCGCACCAGAAGTTCCGCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1281#0 ---------------CCGAAAAGAGCAAAATATATCTCACATCCCCCTCCCGTCACGATC 45 consensus_1281#1 CCGCCCACGCGTCCGCCCACGCGTCCGAAATATATCTCACATCCCCCTCCCGTCACGATC 60 ** * * * ********************************* consensus_1281#0 ACGATCGTGCTGCAGAGTGGCGTGAACAACCTCCTCCCTCCGGTACCCATCTCCGTACAA 105 consensus_1281#1 ACGATCGTGCTGCAGAGTGGCGTGAACAACCTCCTCCCTCCCCTACCCATCTCCGTACAA 120 ***************************************** ***************** consensus_1281#0 CCGGCGCCGGCATCTTTCACACCCCACAGGACGACGATTTCACGTTCAAGGCGAAGCGCG 165 consensus_1281#1 CCGGCGCCGGCATCTTTCACACCCCACAGGACGACGATTTCACGTTCAAGGCGAAGCGCG 180 ************************************************************ consensus_1281#0 CGAAACTATTCTCAGTTCGGCCTTCGAACACATGCCGGTGTTCGAAATCGGTTGGAGTCG 225 consensus_1281#1 CGAAACTATTCTCAGTTCGGCCTTCGAACACATGCCGGTGTTCGAAATCGGTTGGAGTCG 240 ************************************************************ consensus_1281#0 CGCTGATCGGCCCCATTCGAGGGGGCCATGACGCGTTGGCCCGTCCTACTGCTTGCACTG 285 consensus_1281#1 CGCTGATCGGCCCCATTCGAGGGGGCCATGACGCGTTGGCCCGTCCTACTGCTTGCACTG 300 ************************************************************ consensus_1281#0 CTCTCGGTGGCGTTCGGTCATGTGCCGGCCGCGGTCGCCCTAGTGCCCGGCCCGAATGGC 345 consensus_1281#1 CTCTCGGTGGCGTTCGGTCATGTGCCGGCCGCGGTCGCCCTAGTGCCCGGCCCGAATGGC 360 ************************************************************ consensus_1281#0 ATCGGTGGCGGCAGTCTCACGCCGAGCGGGTCCGGCGGTGGTACCGGGAGTTCGAGCGCG 405 consensus_1281#1 ATCGGTGGCGGCAGTCTCACGCCGAGCGGGTCCGGCGGTGGTACCGGGAGTTCGAGCGCG 420 ************************************************************ consensus_1281#0 CCCGAAATCTCTGCCTCGGCCGCCCTTCCCTTCTATCATGACCCGTATCAACCTCAGTCA 465 consensus_1281#1 CCCGAAATCTCTGCCTCGGCCGCCCTTCCCTTCTATCATGACCCGTATCAACCTCAGTCA 480 ************************************************************ consensus_1281#0 CTGCTGCTGCAGCATCAATCAACGAACCAGCAGCACCAGCAGCACCAGCAACAGCAGCAG 525 consensus_1281#1 CTGCTGCTGCAGCATCAATCAACGAACCAGCAGCACCAGCAGCACCAGCAACAGCAGCAG 540 ************************************************************ consensus_1281#0 CAGTCGCAGCCGCCGCAACAGCAGCAGACACACTCATCCGGCTCGTACATTACGAAGATG 585 consensus_1281#1 CAGTCGCAGCCGCCGCAACAGCAGCAGACACACTCATCCGGCTCGTACATTACGAAGATG 600 ************************************************************ consensus_1281#0 CCGGAGAACTCGCCGCACCAGAAGTTCCGCAACAATCGGACGGTGCTG 633 consensus_1281#1 CCGGAGAACTCGCCGCACCAGAAGTTCCGCAA---------------- 632 ******************************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||