cluster # 1283

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1283 cluster # 1283 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1283#0 length = 700 sequences # 1

consensus_1283#1 length = 608 sequences # 1

consensusID : consensus_1283#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 700
fasta sequence

                              [CCGGTTGGAGTTTGCCGTGCAGTTTCGCTGGTTGTTGCCATTTCTTGTGATTTCAGGGGTCCTTCTTCCTTGCATTAAGGACACTCTACCGCGCGTGTGTGCGTGTGGATGTAATAATCCGTTCCGTTGATACGACCGACGGAAACGCGGAAAAGTGATCCAACCATAACTCGCGCGGCCATACACGAATGTTCCTTATCCGACGGCGGCCAATGCTTTGTTGCTGCTGTTCGTCTGTGCAAAGTGGAAGTGGATAAAACCTGTGCCTAACTTTCTCCAATCGCGAGCAAATCTAAGGTTCCGGACGAAGGTACATTTGGTGGTTGGAACAGCCTACCCGACGAAACCTTATCACCTGGCCACCATTCGCTTACGACGGGCTTCGACGGGCACAGAAAATGGAGCACATCAACACACCAAAGATTGAAAATGTCCGTATGATTGACAGATACAACAGCAAAAATCCAACCGTCGGTGTGCTGTACCTTACGGCCACGCATCTTATATTCGTTGACCCGGATGCCAACAAAGAGACATGGGTCCTTTACATGCACATCGCGAACGTGGAAAAGTTGCCCCTGAGCACCACCGGCTCGCCGCTGCTGATACGCTGCAAGACGTTCCTCTCCATCACGTTCGTCATACCGAAGGAGCGCGAATGTCACGACGTGTACACCACGCTCACCAAGCTGTACCAGCC]

[+] EMBL BM611788             [CCGGTTGGAGTTTGCCGTGCAGTTTCGCTGGTTGTTGCCATTTCTTGTGATTTCAGGGGTCCTTCTTCCTTGCATTAAGGACACTCTACCGCGCGTGTGTGCGTGTGGATGTAATAATCCGTTCCGTTGATACGACCGACGGAAACGCGGAAAAGTGATCCAACCATAACTCGCGCGGCCATACACGAATGTTCCTTATCCGACGGCGGCCAATGCTTTGTTGCTGCTGTTCGTCTGTGCAAAGTGGAAGTGGATAAAACCTGTGCCTAACTTTCTCCAATCGCGAGCAAATCTAAGGTTCCGGACGAAGGTACATTTGGTGGTTGGAACAGCCTACCCGACGAAACCTTATCACCTGGCCACCATTCGCTTACGACGGGCTTCGACGGGCACAGAAAATGGAGCACATCAACACACCAAAGATTGAAAATGTCCGTATGATTGACAGATACAACAGCAAAAATCCAACCGTCGGTGTGCTGTACCTTACGGCCACGCATCTTATATTCGTTGACCCGGATGCCAACAAAGAGACATGGGTCCTTTACATGCACATCGCGAACGTGGAAAAGTTGCCCCTGAGCACCACCGGCTCGCCGCTGCTGATACGCTGCAAGACGTTCCTCTCCATCACGTTCGTCATACCGAAGGAGCGCGAATGTCACGACGTGTACACCACGCTCACCAAGCTGTACCAGCC]




>consensus_1283#0
CCGGTTGGAGTTTGCCGTGCAGTTTCGCTGGTTGTTGCCATTTCTTGTGATTTCAGGGGT
CCTTCTTCCTTGCATTAAGGACACTCTACCGCGCGTGTGTGCGTGTGGATGTAATAATCC
GTTCCGTTGATACGACCGACGGAAACGCGGAAAAGTGATCCAACCATAACTCGCGCGGCC
ATACACGAATGTTCCTTATCCGACGGCGGCCAATGCTTTGTTGCTGCTGTTCGTCTGTGC
AAAGTGGAAGTGGATAAAACCTGTGCCTAACTTTCTCCAATCGCGAGCAAATCTAAGGTT
CCGGACGAAGGTACATTTGGTGGTTGGAACAGCCTACCCGACGAAACCTTATCACCTGGC
CACCATTCGCTTACGACGGGCTTCGACGGGCACAGAAAATGGAGCACATCAACACACCAA
AGATTGAAAATGTCCGTATGATTGACAGATACAACAGCAAAAATCCAACCGTCGGTGTGC
TGTACCTTACGGCCACGCATCTTATATTCGTTGACCCGGATGCCAACAAAGAGACATGGG
TCCTTTACATGCACATCGCGAACGTGGAAAAGTTGCCCCTGAGCACCACCGGCTCGCCGC
TGCTGATACGCTGCAAGACGTTCCTCTCCATCACGTTCGTCATACCGAAGGAGCGCGAAT
GTCACGACGTGTACACCACGCTCACCAAGCTGTACCAGCC

consensusID : consensus_1283#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 608
fasta sequence

                              [CCGGGAGTTTGCCGTGCAGTTTCGCTGGTTGTTGCCATTTCTTGTGATTTCAGGGGTCCTTCTTCCTTGCATTAAGGACACTCTACCGCGCGTGTGTGCGTGTGGATGTAATAATCCGTTCCGTTGATACGACCGACGGAAACGCGGAAAAGTGATCCAACCATAACTCGCGCGGCCATACACGAATGTTCCTTATCCGACGGCGGCCAATGCTTTGTTGCTGCTGTTCGTCTGTGCAAAGTGGAAGTGGATAAAACCTGTGCCTAACTTTCTCCAATCGCGAGCAAATCTAAGGTTCCGGACGAAGGTACATTTGGTGGTTGGAACAGCCTACCCGACGAAACCTTATCACCTGGCCACCATTCGCTTACGACGGGCTTCGACGGGCACAGAAAATGGAGCACATCAACACACCAAAGATAAGCTCTGCGAAAAACACGTGTTACGGGTATTTGATGTGATTCGTACGTACGTCGAGCTTAAGATTGATTGAAACCTGTGCGCCCCTCCCGCTCCCAGGCCCAGTGAACTAAAAATGACCCAAGCGGAAGAGGTTCTAGAGGTGAAGAATCTCTACCACAGCAACGTGCCGGATGATCAGCATTCAC]

[+] EMBL BM650934             [CCGGGAGTTTGCCGTGCAGTTTCGCTGGTTGTTGCCATTTCTTGTGATTTCAGGGGTCCTTCTTCCTTGCATTAAGGACACTCTACCGCGCGTGTGTGCGTGTGGATGTAATAATCCGTTCCGTTGATACGACCGACGGAAACGCGGAAAAGTGATCCAACCATAACTCGCGCGGCCATACACGAATGTTCCTTATCCGACGGCGGCCAATGCTTTGTTGCTGCTGTTCGTCTGTGCAAAGTGGAAGTGGATAAAACCTGTGCCTAACTTTCTCCAATCGCGAGCAAATCTAAGGTTCCGGACGAAGGTACATTTGGTGGTTGGAACAGCCTACCCGACGAAACCTTATCACCTGGCCACCATTCGCTTACGACGGGCTTCGACGGGCACAGAAAATGGAGCACATCAACACACCAAAGATAAGCTCTGCGAAAAACACGTGTTACGGGTATTTGATGTGATTCGTACGTACGTCGAGCTTAAGATTGATTGAAACCTGTGCGCCCCTCCCGCTCCCAGGCCCAGTGAACTAAAAATGACCCAAGCGGAAGAGGTTCTAGAGGTGAAGAATCTCTACCACAGCAACGTGCCGGATGATCAGCATTCAC]




>consensus_1283#1
CCGGGAGTTTGCCGTGCAGTTTCGCTGGTTGTTGCCATTTCTTGTGATTTCAGGGGTCCT
TCTTCCTTGCATTAAGGACACTCTACCGCGCGTGTGTGCGTGTGGATGTAATAATCCGTT
CCGTTGATACGACCGACGGAAACGCGGAAAAGTGATCCAACCATAACTCGCGCGGCCATA
CACGAATGTTCCTTATCCGACGGCGGCCAATGCTTTGTTGCTGCTGTTCGTCTGTGCAAA
GTGGAAGTGGATAAAACCTGTGCCTAACTTTCTCCAATCGCGAGCAAATCTAAGGTTCCG
GACGAAGGTACATTTGGTGGTTGGAACAGCCTACCCGACGAAACCTTATCACCTGGCCAC
CATTCGCTTACGACGGGCTTCGACGGGCACAGAAAATGGAGCACATCAACACACCAAAGA
TAAGCTCTGCGAAAAACACGTGTTACGGGTATTTGATGTGATTCGTACGTACGTCGAGCT
TAAGATTGATTGAAACCTGTGCGCCCCTCCCGCTCCCAGGCCCAGTGAACTAAAAATGAC
CCAAGCGGAAGAGGTTCTAGAGGTGAAGAATCTCTACCACAGCAACGTGCCGGATGATCA
GCATTCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1283#0      CCGGTTGGAGTTTGCCGTGCAGTTTCGCTGGTTGTTGCCATTTCTTGTGATTTCAGGGGT 60
consensus_1283#1      ---CCGGGAGTTTGCCGTGCAGTTTCGCTGGTTGTTGCCATTTCTTGTGATTTCAGGGGT 57
                            ******************************************************

consensus_1283#0      CCTTCTTCCTTGCATTAAGGACACTCTACCGCGCGTGTGTGCGTGTGGATGTAATAATCC 120
consensus_1283#1      CCTTCTTCCTTGCATTAAGGACACTCTACCGCGCGTGTGTGCGTGTGGATGTAATAATCC 117
                      ************************************************************

consensus_1283#0      GTTCCGTTGATACGACCGACGGAAACGCGGAAAAGTGATCCAACCATAACTCGCGCGGCC 180
consensus_1283#1      GTTCCGTTGATACGACCGACGGAAACGCGGAAAAGTGATCCAACCATAACTCGCGCGGCC 177
                      ************************************************************

consensus_1283#0      ATACACGAATGTTCCTTATCCGACGGCGGCCAATGCTTTGTTGCTGCTGTTCGTCTGTGC 240
consensus_1283#1      ATACACGAATGTTCCTTATCCGACGGCGGCCAATGCTTTGTTGCTGCTGTTCGTCTGTGC 237
                      ************************************************************

consensus_1283#0      AAAGTGGAAGTGGATAAAACCTGTGCCTAACTTTCTCCAATCGCGAGCAAATCTAAGGTT 300
consensus_1283#1      AAAGTGGAAGTGGATAAAACCTGTGCCTAACTTTCTCCAATCGCGAGCAAATCTAAGGTT 297
                      ************************************************************

consensus_1283#0      CCGGACGAAGGTACATTTGGTGGTTGGAACAGCCTACCCGACGAAACCTTATCACCTGGC 360
consensus_1283#1      CCGGACGAAGGTACATTTGGTGGTTGGAACAGCCTACCCGACGAAACCTTATCACCTGGC 357
                      ************************************************************

consensus_1283#0      CACCATTCGCTTACGACGGGCTTCGACGGGCACAGAAAATGGAGCACATCAACACACCAA 420
consensus_1283#1      CACCATTCGCTTACGACGGGCTTCGACGGGCACAGAAAATGGAGCACATCAACACACCAA 417
                      ************************************************************

consensus_1283#0      AGATTGAAAATGTCCGTATGATTGACAGATACAACAGCAAAAATCCAACCGTCGGTGTGC 480
consensus_1283#1      AGATAAG------CTCTGCGAAAAACACGTGTTACGG---GTATTTGAT-----GTGATT 463
                      ****         *  *  **   ***  *   ** *     **   *      ***   

consensus_1283#0      TGTACCTTACGGCCACGCATCTTATATTCGTTGA--CCCGGATGCCAACAAAGAGACATG 538
consensus_1283#1      CGTACGT----ACGTCGAGCTTAAGATTGATTGAAACCTGTGCGCCCCTCCCGCTCCCAG 519
                       **** *     *  **    * * ***  ****  ** *   ***      *   *  *

consensus_1283#0      GGTCCTTTACATGCACATCGCGAACGTGGAAAAGTTGCCCCTGAGCACCACCGGCTCGCC 598
consensus_1283#1      GCCCAGTGAACTAAAAATGACCCAAGCGGAAGAGGTTCT----AGAGGTGAAGAATCTCT 575
                      *  *  * *  *  * **  *  * * **** ** * *     **       *  ** * 

consensus_1283#0      GCTGCTGATACGCTGCAAGACGTTCCTCTCCATCACGTTCGTCATACCGAAGGAGCGCGA 658
consensus_1283#1      ACCACAGCAACG-TGCCGGATGATCAGCAT--TCAC------------------------ 608
                       *  * *  *** ***  ** * **  *    ****                        

consensus_1283#0      ATGTCACGACGTGTACACCACGCTCACCAAGCTGTACCAGCC 700
consensus_1283#1      ------------------------------------------