cluster # 1319

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Anopheles gambiae
cluster # 1319 cluster # 1319 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1319#0 length = 656 sequences # 1

consensus_1319#1 length = 303 sequences # 1

consensusID : consensus_1319#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 656
fasta sequence

                              [CCGCTCGCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTATCTCATAACCTCTCTTGCACACTGCGCCAAACCAACATGAGCTAGACATGTCGATTTGGATTGAAAAACTTCACTTAAAGAGCTAAGACTCGCATGCCGCGCGCTAGAGTAAACCGAACACACGATGGGGAGTTCACTTTTGCTACCTTAACGTATATACACGAAACAATTACAGATTGCTTACACTTTACAAACTTACGGATAATGCACGACCCGCTCGGGCAGTTTCGGTGAGAGTAGTGGGTAGCTGTGTCGAAGCCCTATAGCTTGTGTGCTCGTCTCTATACCTTACCGTCTACAATCCCTACACGCTGTGTGCTTTAGCAAAACTGTGTCGCTTTAAAGAAAGGGTCTGCCGCTTCCTTTCACACACCCATTGCCCGATGGTGTACAAGAGCGGCTAGAGCACGCTGGAACAACAAGCGCACACTTTTGGGGCAACCGATGCCACTATTATTTTAAGGATAACGACTTTTTTTTTACTTTTAGTGCCTATACCCTAGCAAGTGACCCTAGCAACGAACATTTTGGTACTGAGCCGTCGTTTTCTTTCCGTTCATTCATGTGTTTCATAGAACGGTAACCGCCGGCTGCTAGAAACATAATTTCT]

[+] EMBL BM575644             [CCGCTCGCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTATCTCATAACCTCTCTTGCACACTGCGCCAAACCAACATGAGCTAGACATGTCGATTTGGATTGAAAAACTTCACTTAAAGAGCTAAGACTCGCATGCCGCGCGCTAGAGTAAACCGAACACACGATGGGGAGTTCACTTTTGCTACCTTAACGTATATACACGAAACAATTACAGATTGCTTACACTTTACAAACTTACGGATAATGCACGACCCGCTCGGGCAGTTTCGGTGAGAGTAGTGGGTAGCTGTGTCGAAGCCCTATAGCTTGTGTGCTCGTCTCTATACCTTACCGTCTACAATCCCTACACGCTGTGTGCTTTAGCAAAACTGTGTCGCTTTAAAGAAAGGGTCTGCCGCTTCCTTTCACACACCCATTGCCCGATGGTGTACAAGAGCGGCTAGAGCACGCTGGAACAACAAGCGCACACTTTTGGGGCAACCGATGCCACTATTATTTTAAGGATAACGACTTTTTTTTTACTTTTAGTGCCTATACCCTAGCAAGTGACCCTAGCAACGAACATTTTGGTACTGAGCCGTCGTTTTCTTTCCGTTCATTCATGTGTTTCATAGAACGGTAACCGCCGGCTGCTAGAAACATAATTTCT]




>consensus_1319#0
CCGCTCGCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTATCTCATAACCTCTC
TTGCACACTGCGCCAAACCAACATGAGCTAGACATGTCGATTTGGATTGAAAAACTTCAC
TTAAAGAGCTAAGACTCGCATGCCGCGCGCTAGAGTAAACCGAACACACGATGGGGAGTT
CACTTTTGCTACCTTAACGTATATACACGAAACAATTACAGATTGCTTACACTTTACAAA
CTTACGGATAATGCACGACCCGCTCGGGCAGTTTCGGTGAGAGTAGTGGGTAGCTGTGTC
GAAGCCCTATAGCTTGTGTGCTCGTCTCTATACCTTACCGTCTACAATCCCTACACGCTG
TGTGCTTTAGCAAAACTGTGTCGCTTTAAAGAAAGGGTCTGCCGCTTCCTTTCACACACC
CATTGCCCGATGGTGTACAAGAGCGGCTAGAGCACGCTGGAACAACAAGCGCACACTTTT
GGGGCAACCGATGCCACTATTATTTTAAGGATAACGACTTTTTTTTTACTTTTAGTGCCT
ATACCCTAGCAAGTGACCCTAGCAACGAACATTTTGGTACTGAGCCGTCGTTTTCTTTCC
GTTCATTCATGTGTTTCATAGAACGGTAACCGCCGGCTGCTAGAAACATAATTTCT

consensusID : consensus_1319#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 303
fasta sequence

                              [CCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGCACACTGCGCCAAACCAACATGAGCTAGACATGTCGATTTGGATTGAAAAACTTCACTTAAAGAGCTAAGACTCGCATGCCGCGCGCTAGAGTAAACCGAACACACGATGGGGAGTTCACTTTTGCTACCTTAACGCATATACACGAAACAATTACAGATTGCTTACACTTTACAAACTTACGGATAATGCACGACCCGCTCGGGCAGTTTCGGTGAGAGTAGCTATGAAGAGATCTACAACAC]

[+] EMBL BM580174             [CCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGCACACTGCGCCAAACCAACATGAGCTAGACATGTCGATTTGGATTGAAAAACTTCACTTAAAGAGCTAAGACTCGCATGCCGCGCGCTAGAGTAAACCGAACACACGATGGGGAGTTCACTTTTGCTACCTTAACGCATATACACGAAACAATTACAGATTGCTTACACTTTACAAACTTACGGATAATGCACGACCCGCTCGGGCAGTTTCGGTGAGAGTAGCTATGAAGAGATCTACAACAC]




>consensus_1319#1
CCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGC
ACACTGCGCCAAACCAACATGAGCTAGACATGTCGATTTGGATTGAAAAACTTCACTTAA
AGAGCTAAGACTCGCATGCCGCGCGCTAGAGTAAACCGAACACACGATGGGGAGTTCACT
TTTGCTACCTTAACGCATATACACGAAACAATTACAGATTGCTTACACTTTACAAACTTA
CGGATAATGCACGACCCGCTCGGGCAGTTTCGGTGAGAGTAGCTATGAAGAGATCTACAA
CAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1319#0      CCGCTCGCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTATCTCATAACCTCTC 60
consensus_1319#1      CCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC----TCTCTC 56
                      ****** ************** *********************** ****     *****

consensus_1319#0      TTGCACACTGCGCCAAACCAACATGAGCTAGACATGTCGATTTGGATTGAAAAACTTCAC 120
consensus_1319#1      TTGCACACTGCGCCAAACCAACATGAGCTAGACATGTCGATTTGGATTGAAAAACTTCAC 116
                      ************************************************************

consensus_1319#0      TTAAAGAGCTAAGACTCGCATGCCGCGCGCTAGAGTAAACCGAACACACGATGGGGAGTT 180
consensus_1319#1      TTAAAGAGCTAAGACTCGCATGCCGCGCGCTAGAGTAAACCGAACACACGATGGGGAGTT 176
                      ************************************************************

consensus_1319#0      CACTTTTGCTACCTTAACGTATATACACGAAACAATTACAGATTGCTTACACTTTACAAA 240
consensus_1319#1      CACTTTTGCTACCTTAACGCATATACACGAAACAATTACAGATTGCTTACACTTTACAAA 236
                      ******************* ****************************************

consensus_1319#0      CTTACGGATAATGCACGACCCGCTCGGGCAGTTTCGGTGAGAGTAGTGGGTAGCTGTGTC 300
consensus_1319#1      CTTACGGATAATGCACGACCCGCTCGGGCAGTTTCGGTGAGAGTAG-------CTATGA- 288
                      **********************************************       ** **  

consensus_1319#0      GAAGCCCTATAGCTTGTGTGCTCGTCTCTATACCTTACCGTCTACAATCCCTACACGCTG 360
consensus_1319#1      AGAGATCTACAACAC--------------------------------------------- 303
                        **  *** * *                                               

consensus_1319#0      TGTGCTTTAGCAAAACTGTGTCGCTTTAAAGAAAGGGTCTGCCGCTTCCTTTCACACACC 420
consensus_1319#1      ------------------------------------------------------------
                                                                                  

consensus_1319#0      CATTGCCCGATGGTGTACAAGAGCGGCTAGAGCACGCTGGAACAACAAGCGCACACTTTT 480
consensus_1319#1      ------------------------------------------------------------
                                                                                  

consensus_1319#0      GGGGCAACCGATGCCACTATTATTTTAAGGATAACGACTTTTTTTTTACTTTTAGTGCCT 540
consensus_1319#1      ------------------------------------------------------------
                                                                                  

consensus_1319#0      ATACCCTAGCAAGTGACCCTAGCAACGAACATTTTGGTACTGAGCCGTCGTTTTCTTTCC 600
consensus_1319#1      ------------------------------------------------------------
                                                                                  

consensus_1319#0      GTTCATTCATGTGTTTCATAGAACGGTAACCGCCGGCTGCTAGAAACATAATTTCT 656
consensus_1319#1      --------------------------------------------------------