cluster # 1323

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Anopheles gambiae
cluster # 1323 cluster # 1323 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1323#0 length = 703 sequences # 1

consensus_1323#1 length = 391 sequences # 1

consensusID : consensus_1323#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 703
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGGGCAAGTGTACGGGCCGGGTTCACGGGCGCTAGCGGGTGAAGTCTGATTTTTGGACGCATTTTGTTTTCTGCCAACGTTGGTGGAGTGCGCGTAAAGCCGGAGGCGGAGTTAGCTGTCCAAGTTTTGTGTCCAATGTGCTGTACTAGTATTATGAACAATTACACGCAAACGCACGCCGACACCTTAGCAAGTTCCTTGTGAGTTGTGAATTGAGTTGTGTGAATTGAGCGGTATAGCATTTCCGAGACTGTAAACTTAAGCGTATGTGCGGCTAGTGCATTATCGTTACAATTGATTACTGGAAAAGTATTACTAGACAAACTATACGAACAAAAAAAAACCCCATACATATCACTCGGCCCCATACGCGAGTTGGGGTGGGAAACAAACTAACACACAAACACACCGTCAGGCCGAGCAGTTTAGTTGTTGAGCGTGGTCCGAGGGTAGTGTAGTAACCACCGCACGACGTTTAGTAGTTTTTTAGGTTACTTGCTGTGCTTGGTGTGCTTGCGAGGGTGCACAAATTGCCTCTATGTGTCAGTGGAACCAGGCAGGCCGCAGCAGACGGAAGTGTAACCGCAGTACGTGCATCTGTACACTTTCTGTCGCGTGTACACTTGCGGTAAATATATATATATACACACGCATATAACACAAAACAAAACAAAACAT]

[+] EMBL BM647726             [CCGCGGACGCGTGGGCGGACGCGTGGGGGCAAGTGTACGGGCCGGGTTCACGGGCGCTAGCGGGTGAAGTCTGATTTTTGGACGCATTTTGTTTTCTGCCAACGTTGGTGGAGTGCGCGTAAAGCCGGAGGCGGAGTTAGCTGTCCAAGTTTTGTGTCCAATGTGCTGTACTAGTATTATGAACAATTACACGCAAACGCACGCCGACACCTTAGCAAGTTCCTTGTGAGTTGTGAATTGAGTTGTGTGAATTGAGCGGTATAGCATTTCCGAGACTGTAAACTTAAGCGTATGTGCGGCTAGTGCATTATCGTTACAATTGATTACTGGAAAAGTATTACTAGACAAACTATACGAACAAAAAAAAACCCCATACATATCACTCGGCCCCATACGCGAGTTGGGGTGGGAAACAAACTAACACACAAACACACCGTCAGGCCGAGCAGTTTAGTTGTTGAGCGTGGTCCGAGGGTAGTGTAGTAACCACCGCACGACGTTTAGTAGTTTTTTAGGTTACTTGCTGTGCTTGGTGTGCTTGCGAGGGTGCACAAATTGCCTCTATGTGTCAGTGGAACCAGGCAGGCCGCAGCAGACGGAAGTGTAACCGCAGTACGTGCATCTGTACACTTTCTGTCGCGTGTACACTTGCGGTAAATATATATATATACACACGCATATAACACAAAACAAAACAAAACAT]




>consensus_1323#0
CCGCGGACGCGTGGGCGGACGCGTGGGGGCAAGTGTACGGGCCGGGTTCACGGGCGCTAG
CGGGTGAAGTCTGATTTTTGGACGCATTTTGTTTTCTGCCAACGTTGGTGGAGTGCGCGT
AAAGCCGGAGGCGGAGTTAGCTGTCCAAGTTTTGTGTCCAATGTGCTGTACTAGTATTAT
GAACAATTACACGCAAACGCACGCCGACACCTTAGCAAGTTCCTTGTGAGTTGTGAATTG
AGTTGTGTGAATTGAGCGGTATAGCATTTCCGAGACTGTAAACTTAAGCGTATGTGCGGC
TAGTGCATTATCGTTACAATTGATTACTGGAAAAGTATTACTAGACAAACTATACGAACA
AAAAAAAACCCCATACATATCACTCGGCCCCATACGCGAGTTGGGGTGGGAAACAAACTA
ACACACAAACACACCGTCAGGCCGAGCAGTTTAGTTGTTGAGCGTGGTCCGAGGGTAGTG
TAGTAACCACCGCACGACGTTTAGTAGTTTTTTAGGTTACTTGCTGTGCTTGGTGTGCTT
GCGAGGGTGCACAAATTGCCTCTATGTGTCAGTGGAACCAGGCAGGCCGCAGCAGACGGA
AGTGTAACCGCAGTACGTGCATCTGTACACTTTCTGTCGCGTGTACACTTGCGGTAAATA
TATATATATACACACGCATATAACACAAAACAAAACAAAACAT

consensusID : consensus_1323#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 391
fasta sequence

                              [GGGTACACGGATGCACAGCATTGGCGACAGGGCGTTGGCGCCCCTTTCCGGCAGTCGAAATCGATCTGGCAAGTGTACGGGCCGGTTTCACGGGCGCCAGCGGGTGAAGTCTGATTTTTGGACGCATTTTGTTTTCCGCCAACGTTGGTGGGGCGCGCGTAAAGCCGGAGGCGGAGTTAGCTGTCCAAGTTTTGTGTCCAATGTGCTGTACTAGTATTATGAACAATCACACGCAAACGCACGCCGACACCTTAGCAAGTTCCTGGTGAGTAGTGAATTGAGTTGTGTGAATTGAGCGGTATAGCATTTCCGAGACTGTAAACTTAAGCGTATGTGCGGCTAGTGCATTATCGTTACAATTGATTACTGGAAAAGTATTACTAGACAAACT]

[+] EMBL BX613192             [GGGTACACGGATGCACAGCATTGGCGACAGGGCGTTGGCGCCCCTTTCCGGCAGTCGAAATCGATCTGGCAAGTGTACGGGCCGGTTTCACGGGCGCCAGCGGGTGAAGTCTGATTTTTGGACGCATTTTGTTTTCCGCCAACGTTGGTGGGGCGCGCGTAAAGCCGGAGGCGGAGTTAGCTGTCCAAGTTTTGTGTCCAATGTGCTGTACTAGTATTATGAACAATCACACGCAAACGCACGCCGACACCTTAGCAAGTTCCTGGTGAGTAGTGAATTGAGTTGTGTGAATTGAGCGGTATAGCATTTCCGAGACTGTAAACTTAAGCGTATGTGCGGCTAGTGCATTATCGTTACAATTGATTACTGGAAAAGTATTACTAGACAAACT]




>consensus_1323#1
GGGTACACGGATGCACAGCATTGGCGACAGGGCGTTGGCGCCCCTTTCCGGCAGTCGAAA
TCGATCTGGCAAGTGTACGGGCCGGTTTCACGGGCGCCAGCGGGTGAAGTCTGATTTTTG
GACGCATTTTGTTTTCCGCCAACGTTGGTGGGGCGCGCGTAAAGCCGGAGGCGGAGTTAG
CTGTCCAAGTTTTGTGTCCAATGTGCTGTACTAGTATTATGAACAATCACACGCAAACGC
ACGCCGACACCTTAGCAAGTTCCTGGTGAGTAGTGAATTGAGTTGTGTGAATTGAGCGGT
ATAGCATTTCCGAGACTGTAAACTTAAGCGTATGTGCGGCTAGTGCATTATCGTTACAAT
TGATTACTGGAAAAGTATTACTAGACAAACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1323#0      ----------------------------------------CCGCGGACGCGTGGGCGGAC 20
consensus_1323#1      GGGTACACGGATGCACAGCATTGGCGACAGGGCGTTGGCGCCCCTTTCCGGCAGTCGAAA 60
                                                              ** *   *  *  * ** * 

consensus_1323#0      GCGTGGGGGCAAGTGTACGGGCCGGGTTCACGGGCGCTAGCGGGTGAAGTCTGATTTTTG 80
consensus_1323#1      TCGATCTGGCAAGTGTACGGGCCGGTTTCACGGGCGCCAGCGGGTGAAGTCTGATTTTTG 120
                       **    ****************** *********** **********************

consensus_1323#0      GACGCATTTTGTTTTCTGCCAACGTTGGTGGAGTGCGCGTAAAGCCGGAGGCGGAGTTAG 140
consensus_1323#1      GACGCATTTTGTTTTCCGCCAACGTTGGTGGGGCGCGCGTAAAGCCGGAGGCGGAGTTAG 180
                      **************** ************** * **************************

consensus_1323#0      CTGTCCAAGTTTTGTGTCCAATGTGCTGTACTAGTATTATGAACAATTACACGCAAACGC 200
consensus_1323#1      CTGTCCAAGTTTTGTGTCCAATGTGCTGTACTAGTATTATGAACAATCACACGCAAACGC 240
                      *********************************************** ************

consensus_1323#0      ACGCCGACACCTTAGCAAGTTCCTTGTGAGTTGTGAATTGAGTTGTGTGAATTGAGCGGT 260
consensus_1323#1      ACGCCGACACCTTAGCAAGTTCCTGGTGAGTAGTGAATTGAGTTGTGTGAATTGAGCGGT 300
                      ************************ ****** ****************************

consensus_1323#0      ATAGCATTTCCGAGACTGTAAACTTAAGCGTATGTGCGGCTAGTGCATTATCGTTACAAT 320
consensus_1323#1      ATAGCATTTCCGAGACTGTAAACTTAAGCGTATGTGCGGCTAGTGCATTATCGTTACAAT 360
                      ************************************************************

consensus_1323#0      TGATTACTGGAAAAGTATTACTAGACAAACTATACGAACAAAAAAAAACCCCATACATAT 380
consensus_1323#1      TGATTACTGGAAAAGTATTACTAGACAAACT----------------------------- 391
                      *******************************                             

consensus_1323#0      CACTCGGCCCCATACGCGAGTTGGGGTGGGAAACAAACTAACACACAAACACACCGTCAG 440
consensus_1323#1      ------------------------------------------------------------
                                                                                  

consensus_1323#0      GCCGAGCAGTTTAGTTGTTGAGCGTGGTCCGAGGGTAGTGTAGTAACCACCGCACGACGT 500
consensus_1323#1      ------------------------------------------------------------
                                                                                  

consensus_1323#0      TTAGTAGTTTTTTAGGTTACTTGCTGTGCTTGGTGTGCTTGCGAGGGTGCACAAATTGCC 560
consensus_1323#1      ------------------------------------------------------------
                                                                                  

consensus_1323#0      TCTATGTGTCAGTGGAACCAGGCAGGCCGCAGCAGACGGAAGTGTAACCGCAGTACGTGC 620
consensus_1323#1      ------------------------------------------------------------
                                                                                  

consensus_1323#0      ATCTGTACACTTTCTGTCGCGTGTACACTTGCGGTAAATATATATATATACACACGCATA 680
consensus_1323#1      ------------------------------------------------------------
                                                                                  

consensus_1323#0      TAACACAAAACAAAACAAAACAT 703
consensus_1323#1      -----------------------