cluster # 133

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Anopheles gambiae
cluster # 133 cluster # 133 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_133#0 length = 661 sequences # 1

consensus_133#1 length = 483 sequences # 1

consensusID : consensus_133#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 661
fasta sequence

                              [CCGCCCACGCGTCCGGAGGAACAGTTCCCCGCCGAAACGGAATTGCCGGAAGAAAACAATTCGCCGGCAGTAGAAGAATCAACCACCTTAGCGCCACCATCGGAAGGCGTATCCGGACAGGAATCAGTTGCAACGGAAGCAGCCGAGGTAGAAGCCAGCGAAAACACGGAATCGGCTGTAGCGACGGAACAGACGGAAGCTTCGGAACCGGACTCGACTACTCAGCAGCAAGTGGAGGAACAATCGTCCACGGACGCTTCCGAAGCTGTCACGACGGAAGAAAGTGTACAGTCCGAACAATCGACGGAGGGCGTAGCTGCTGAGACCGAAGTCTCGGAGGACGCTTCTACAGCCGCAGTTCCAGAAACACCAGAGCAGGTAGAAACAGAGACACCGGTGGATGTTCCGGAAGAAACCGAAGCACCAGTTCTCCCAGAGGTAGAAGAGGAAACGGGTCCCGAAACGGTACCATCAGAGCCTGAGGTGGAAGCTGAAGTTGAGGAAGTAACCTCGGAAGCATCCGTGGAACCTGAAGCTTCGGAACCGACACCAGCATCGCCTGTGGAGACTGAGGCTCCGGAAGCTAGCTCCGAACCATCGGTAGAGCCCGAAGCGTCTGAGCCCACTTCTCAACCGGCTGAGGAATCGGAGACTCCTGAAT]

[+] EMBL BM584795             [CCGCCCACGCGTCCGGAGGAACAGTTCCCCGCCGAAACGGAATTGCCGGAAGAAAACAATTCGCCGGCAGTAGAAGAATCAACCACCTTAGCGCCACCATCGGAAGGCGTATCCGGACAGGAATCAGTTGCAACGGAAGCAGCCGAGGTAGAAGCCAGCGAAAACACGGAATCGGCTGTAGCGACGGAACAGACGGAAGCTTCGGAACCGGACTCGACTACTCAGCAGCAAGTGGAGGAACAATCGTCCACGGACGCTTCCGAAGCTGTCACGACGGAAGAAAGTGTACAGTCCGAACAATCGACGGAGGGCGTAGCTGCTGAGACCGAAGTCTCGGAGGACGCTTCTACAGCCGCAGTTCCAGAAACACCAGAGCAGGTAGAAACAGAGACACCGGTGGATGTTCCGGAAGAAACCGAAGCACCAGTTCTCCCAGAGGTAGAAGAGGAAACGGGTCCCGAAACGGTACCATCAGAGCCTGAGGTGGAAGCTGAAGTTGAGGAAGTAACCTCGGAAGCATCCGTGGAACCTGAAGCTTCGGAACCGACACCAGCATCGCCTGTGGAGACTGAGGCTCCGGAAGCTAGCTCCGAACCATCGGTAGAGCCCGAAGCGTCTGAGCCCACTTCTCAACCGGCTGAGGAATCGGAGACTCCTGAAT]




>consensus_133#0
CCGCCCACGCGTCCGGAGGAACAGTTCCCCGCCGAAACGGAATTGCCGGAAGAAAACAAT
TCGCCGGCAGTAGAAGAATCAACCACCTTAGCGCCACCATCGGAAGGCGTATCCGGACAG
GAATCAGTTGCAACGGAAGCAGCCGAGGTAGAAGCCAGCGAAAACACGGAATCGGCTGTA
GCGACGGAACAGACGGAAGCTTCGGAACCGGACTCGACTACTCAGCAGCAAGTGGAGGAA
CAATCGTCCACGGACGCTTCCGAAGCTGTCACGACGGAAGAAAGTGTACAGTCCGAACAA
TCGACGGAGGGCGTAGCTGCTGAGACCGAAGTCTCGGAGGACGCTTCTACAGCCGCAGTT
CCAGAAACACCAGAGCAGGTAGAAACAGAGACACCGGTGGATGTTCCGGAAGAAACCGAA
GCACCAGTTCTCCCAGAGGTAGAAGAGGAAACGGGTCCCGAAACGGTACCATCAGAGCCT
GAGGTGGAAGCTGAAGTTGAGGAAGTAACCTCGGAAGCATCCGTGGAACCTGAAGCTTCG
GAACCGACACCAGCATCGCCTGTGGAGACTGAGGCTCCGGAAGCTAGCTCCGAACCATCG
GTAGAGCCCGAAGCGTCTGAGCCCACTTCTCAACCGGCTGAGGAATCGGAGACTCCTGAA
T

consensusID : consensus_133#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 483
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCGAAGCGATCGGTTCGACACACACACACCCATCCTGTTATCTTAAGTGGTGATAATAAAAAGTACTTGTAACCCCTGTAAACGCACAAAACATGGCGATCCTGCCAGGAGCTGTTCGCTTGGATGGTTAATAAAGTACTGTGTGCCGGTAGCCGTTTACGTATAACACAATAATCAGTGCAACGTGGTGAAGTGAAAGTGTAAGTGCCGCAAAGTATTGGACAGTGTTAACAAAAGAGGATCGACGCAACAGCCAACAAAAACGAGGACGAAGAGAGACGAATAACCCTCAGAGCGACGCTCATCCCGATCGAAGTCCATGCGCACGCATACAACCACGCGCACACGCCACCTAACTGCAGAACGCGCTACACGGACGTGTGACCGTTCTATCGCACGCATCGTGAGACGACAGGCCGAAAAAACTGACCGAGAGGAAAGCTGC]

[+] EMBL BM657495             [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCGAAGCGATCGGTTCGACACACACACACCCATCCTGTTATCTTAAGTGGTGATAATAAAAAGTACTTGTAACCCCTGTAAACGCACAAAACATGGCGATCCTGCCAGGAGCTGTTCGCTTGGATGGTTAATAAAGTACTGTGTGCCGGTAGCCGTTTACGTATAACACAATAATCAGTGCAACGTGGTGAAGTGAAAGTGTAAGTGCCGCAAAGTATTGGACAGTGTTAACAAAAGAGGATCGACGCAACAGCCAACAAAAACGAGGACGAAGAGAGACGAATAACCCTCAGAGCGACGCTCATCCCGATCGAAGTCCATGCGCACGCATACAACCACGCGCACACGCCACCTAACTGCAGAACGCGCTACACGGACGTGTGACCGTTCTATCGCACGCATCGTGAGACGACAGGCCGAAAAAACTGACCGAGAGGAAAGCTGC]




>consensus_133#1
CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCGAAGCGATCGGTTCGACACA
CACACACCCATCCTGTTATCTTAAGTGGTGATAATAAAAAGTACTTGTAACCCCTGTAAA
CGCACAAAACATGGCGATCCTGCCAGGAGCTGTTCGCTTGGATGGTTAATAAAGTACTGT
GTGCCGGTAGCCGTTTACGTATAACACAATAATCAGTGCAACGTGGTGAAGTGAAAGTGT
AAGTGCCGCAAAGTATTGGACAGTGTTAACAAAAGAGGATCGACGCAACAGCCAACAAAA
ACGAGGACGAAGAGAGACGAATAACCCTCAGAGCGACGCTCATCCCGATCGAAGTCCATG
CGCACGCATACAACCACGCGCACACGCCACCTAACTGCAGAACGCGCTACACGGACGTGT
GACCGTTCTATCGCACGCATCGTGAGACGACAGGCCGAAAAAACTGACCGAGAGGAAAGC
TGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_133#0      CCGCCCACGCGTCCGGAGGAACAGTTCCCCGCCGAAACGGAATTGCCGGAAGAAAACAAT 60
consensus_133#1      CCGCCCACGCGTCCGC----CCACGCGTCCGCCCACGCG----TCCGCGAAGCGATCGGT 52
                     ***************      **     ***** *  **    * *  ****  * *  *

consensus_133#0      TCGCCGGCAGTAGAAGAATCAACCACCTTAGCGCCACCATCGGAAGGCGTATCCGGACAG 120
consensus_133#1      TCGACA-------------CACACACACCCATCCTGTTATCTTAAGTGGTGAT--AATAA 97
                     *** *              **  ***       *    ***  ***  **      * * 

consensus_133#0      GAATCAGTTGCAACGGAAGCAGCCGAGGTAGAAGCCAGCGAAAACACGGAATCGGCTGTA 180
consensus_133#1      AAAGTACTTGTAACCCCTGTAAACG---CACAAAACATGGCGATCCTGCCAGGAGCTGT- 153
                      **  * *** ***    * *  **    * **  **  *  * *  *  *   ***** 

consensus_133#0      GCGACGGAACAGACGGAAGCTTCGGAACCGGACTCGACTACTCAGCAGCAAGTGGAGGAA 240
consensus_133#1      ----TCGCTTGGATGGTTAATAAAGTACTGTGTGCCGGTAGCCGTTTACGTATAACACAA 209
                           *    ** **    *   * ** *    *   **  *     *   *     **

consensus_133#0      CAATCGT--CCACGGACGCTTCCGAAGCTGTCA-CGACGGAAGAAAGTGTACAGTCCGAA 297
consensus_133#1      TAATCAGTGCAACGTGGTGAAGTGAAAGTGTAAGTGCCGCAAAGTATTGGACAGTGTTAA 269
                      ****    * ***         ***  *** *  * ** **   * ** *****   **

consensus_133#0      CAATCGACGGAGGGCGTAGCTGCTGAGACCGAAGTCTCGGAGGACGCTTCTACAGCCGCA 357
consensus_133#1      CAAAAGAGGATCGACGCAACAGCCAA---CAAAAACGAGGACGAAG-----AGAGACGAA 321
                     ***  ** *   * ** * * **  *   * **  *  *** ** *     * ** ** *

consensus_133#0      GTTCCAGAAACACCAGAGCAGGTAGAAACAGAGACACCGGTGGATGTTCCGGAAGAAACC 417
consensus_133#1      T------AACCCTCAGAGC-GACGCTCATCCCGATCGAAGTCCATGCGCACGCATACAAC 374
                            ** *  ****** *      *    **     **  ***  *  * * * * *

consensus_133#0      GAAGCAC-CAGTTCTCCCAGAGGTAGAAGAGGAAACG-GGTCCCGAAACGGTACCATCAG 475
consensus_133#1      CACGCGCACACGCCACCTAACTGCAGAACGCGCTACACGGACGTGTGACCGTTCTATCGC 434
                      * ** * **   * ** *   * ****   *  **  ** *  *  ** ** * ***  

consensus_133#0      AGCCTGAGGTGGAAGCTGAAGTTGAGGAAGTAACCTCGGAAGCATCCGTGGAACCTGAAG 535
consensus_133#1      ACGCATCGTGAGACGACAGGCCGAAAAAACTGACCGAGAGGAAAGCTGC----------- 483
                     *  *   *   ** *         *  ** * ***  *     * * *            

consensus_133#0      CTTCGGAACCGACACCAGCATCGCCTGTGGAGACTGAGGCTCCGGAAGCTAGCTCCGAAC 595
consensus_133#1      ------------------------------------------------------------
                                                                                 

consensus_133#0      CATCGGTAGAGCCCGAAGCGTCTGAGCCCACTTCTCAACCGGCTGAGGAATCGGAGACTC 655
consensus_133#1      ------------------------------------------------------------
                                                                                 

consensus_133#0      CTGAAT 661
consensus_133#1      ------