cluster # 1332

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Anopheles gambiae
cluster # 1332 cluster # 1332 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1332#0 length = 623 sequences # 1

consensus_1332#1 length = 124 sequences # 1

consensusID : consensus_1332#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 623
fasta sequence

                              [CCGTCGATACAGTGCTGTTGTGCCGTGGTGGTTGTTCTTTCATCAATTTACTTAAATAACTTTGCTGCATAGCTGGTGATAATGTTCAGTGCTCTGCATGCTTATCAGGAACACGCGGAACGTGTGTGTCTGTGATAAGAGTTTGTGTAGAGATAAAAGAGATTCTACTGACCTTCCTGGAGATGATGGCTTGGAGGGGCGTACGCACTGTTGGCACGTGCACACCTCTTATCGAGGGTTTTAAACGCTTCCGGAGGAGGCTCTGCGATGAAATAGGGTAAAGGAACAAGAGGTAGAAATACAGCAACTAAAGGCGGAAATTGAATTGCTCCGCAAGCAAACCGGTATACGGCATCCGCTTGTAGCGCCGCAGCTACCTACCAAACCGGGCGGGCTCGTACCGTCCCGGCCATCGATCGCTGGCGCTGGACCGGGTGGCGTACCCACCGTCGGTGCAGCGGGAAGTCCATCCTCGCTGGGAGCGACTGTCACTTCAGGATCGATAGGTATACCAGGGCAAATGATTAGTAGCATGGCGACGAAAGTTGTCCAGCCGACCGCAACCGTATCGAAGCGTTCCGGTTACCGCACCAACAACCGGAATCGCTCGCTCGGTCTCACCG]

[+] EMBL BM594472             [CCGTCGATACAGTGCTGTTGTGCCGTGGTGGTTGTTCTTTCATCAATTTACTTAAATAACTTTGCTGCATAGCTGGTGATAATGTTCAGTGCTCTGCATGCTTATCAGGAACACGCGGAACGTGTGTGTCTGTGATAAGAGTTTGTGTAGAGATAAAAGAGATTCTACTGACCTTCCTGGAGATGATGGCTTGGAGGGGCGTACGCACTGTTGGCACGTGCACACCTCTTATCGAGGGTTTTAAACGCTTCCGGAGGAGGCTCTGCGATGAAATAGGGTAAAGGAACAAGAGGTAGAAATACAGCAACTAAAGGCGGAAATTGAATTGCTCCGCAAGCAAACCGGTATACGGCATCCGCTTGTAGCGCCGCAGCTACCTACCAAACCGGGCGGGCTCGTACCGTCCCGGCCATCGATCGCTGGCGCTGGACCGGGTGGCGTACCCACCGTCGGTGCAGCGGGAAGTCCATCCTCGCTGGGAGCGACTGTCACTTCAGGATCGATAGGTATACCAGGGCAAATGATTAGTAGCATGGCGACGAAAGTTGTCCAGCCGACCGCAACCGTATCGAAGCGTTCCGGTTACCGCACCAACAACCGGAATCGCTCGCTCGGTCTCACCG]




>consensus_1332#0
CCGTCGATACAGTGCTGTTGTGCCGTGGTGGTTGTTCTTTCATCAATTTACTTAAATAAC
TTTGCTGCATAGCTGGTGATAATGTTCAGTGCTCTGCATGCTTATCAGGAACACGCGGAA
CGTGTGTGTCTGTGATAAGAGTTTGTGTAGAGATAAAAGAGATTCTACTGACCTTCCTGG
AGATGATGGCTTGGAGGGGCGTACGCACTGTTGGCACGTGCACACCTCTTATCGAGGGTT
TTAAACGCTTCCGGAGGAGGCTCTGCGATGAAATAGGGTAAAGGAACAAGAGGTAGAAAT
ACAGCAACTAAAGGCGGAAATTGAATTGCTCCGCAAGCAAACCGGTATACGGCATCCGCT
TGTAGCGCCGCAGCTACCTACCAAACCGGGCGGGCTCGTACCGTCCCGGCCATCGATCGC
TGGCGCTGGACCGGGTGGCGTACCCACCGTCGGTGCAGCGGGAAGTCCATCCTCGCTGGG
AGCGACTGTCACTTCAGGATCGATAGGTATACCAGGGCAAATGATTAGTAGCATGGCGAC
GAAAGTTGTCCAGCCGACCGCAACCGTATCGAAGCGTTCCGGTTACCGCACCAACAACCG
GAATCGCTCGCTCGGTCTCACCG

consensusID : consensus_1332#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 124
fasta sequence

                              [CCGCGGACGCGTGGGGTGCTGTTGTGCCGTGGTGGTTGTTCTTTCATCAATTTACTTAAATAACTTTGCTGCATAGCTGGTGATAATGTTCAGTGCTCTGCATGCTTATCAGGAACACGCGGAA]

[+] EMBL BM581786             [CCGCGGACGCGTGGGGTGCTGTTGTGCCGTGGTGGTTGTTCTTTCATCAATTTACTTAAATAACTTTGCTGCATAGCTGGTGATAATGTTCAGTGCTCTGCATGCTTATCAGGAACACGCGGAA]




>consensus_1332#1
CCGCGGACGCGTGGGGTGCTGTTGTGCCGTGGTGGTTGTTCTTTCATCAATTTACTTAAA
TAACTTTGCTGCATAGCTGGTGATAATGTTCAGTGCTCTGCATGCTTATCAGGAACACGC
GGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1332#0      CCGTCGATACA----GTGCTGTTGTGCCGTGGTGGTTGTTCTTTCATCAATTTACTTAAA 56
consensus_1332#1      CCGCGGACGCGTGGGGTGCTGTTGTGCCGTGGTGGTTGTTCTTTCATCAATTTACTTAAA 60
                      ***  **  *     *********************************************

consensus_1332#0      TAACTTTGCTGCATAGCTGGTGATAATGTTCAGTGCTCTGCATGCTTATCAGGAACACGC 116
consensus_1332#1      TAACTTTGCTGCATAGCTGGTGATAATGTTCAGTGCTCTGCATGCTTATCAGGAACACGC 120
                      ************************************************************

consensus_1332#0      GGAACGTGTGTGTCTGTGATAAGAGTTTGTGTAGAGATAAAAGAGATTCTACTGACCTTC 176
consensus_1332#1      GGAA-------------------------------------------------------- 124
                      ****                                                        

consensus_1332#0      CTGGAGATGATGGCTTGGAGGGGCGTACGCACTGTTGGCACGTGCACACCTCTTATCGAG 236
consensus_1332#1      ------------------------------------------------------------
                                                                                  

consensus_1332#0      GGTTTTAAACGCTTCCGGAGGAGGCTCTGCGATGAAATAGGGTAAAGGAACAAGAGGTAG 296
consensus_1332#1      ------------------------------------------------------------
                                                                                  

consensus_1332#0      AAATACAGCAACTAAAGGCGGAAATTGAATTGCTCCGCAAGCAAACCGGTATACGGCATC 356
consensus_1332#1      ------------------------------------------------------------
                                                                                  

consensus_1332#0      CGCTTGTAGCGCCGCAGCTACCTACCAAACCGGGCGGGCTCGTACCGTCCCGGCCATCGA 416
consensus_1332#1      ------------------------------------------------------------
                                                                                  

consensus_1332#0      TCGCTGGCGCTGGACCGGGTGGCGTACCCACCGTCGGTGCAGCGGGAAGTCCATCCTCGC 476
consensus_1332#1      ------------------------------------------------------------
                                                                                  

consensus_1332#0      TGGGAGCGACTGTCACTTCAGGATCGATAGGTATACCAGGGCAAATGATTAGTAGCATGG 536
consensus_1332#1      ------------------------------------------------------------
                                                                                  

consensus_1332#0      CGACGAAAGTTGTCCAGCCGACCGCAACCGTATCGAAGCGTTCCGGTTACCGCACCAACA 596
consensus_1332#1      ------------------------------------------------------------
                                                                                  

consensus_1332#0      ACCGGAATCGCTCGCTCGGTCTCACCG 623
consensus_1332#1      ---------------------------