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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1355#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence
[GGACGGGGTCGACTTCGACCAGGGCGCCCGGTGCCTGATTCAGTCGACCGGGTTCGGCCGGCTGGCACCGAACATTCTCATGCTGGGCTACAAAACCAACTGGCGGGCGGCGAACCATCAGCAGCTGAATGCGTACTACAACACATTGCATACCGCGTTCGATAACCGGCTCGCCCTGCTGATTCTGCGCATGGGCAAGGGGCTCGACATCTTCAAGGGCCTGTCGAGCAGTGACCTCTACACGACCGTTCCCTCGCCCCAGGAAACGACCGTATCGTTCACCTCGAAGCGGATGGCCGCTCGCCGCTCGCTAATGCCCGTAAACTCCAATCTCGACCTGCACGAGCTGATGCAGTCGAACCGTTCCAGCCAGACGTCCCCAGCGCCCACGTTCCACGCTGCACCGGCGTTCGACTATCCGTCGCCGCCGGTCGTTCCGGCCGAACCGGAAGCGAACCTGTTCAAGCAGAAGCAACCGAAGGGCACGATCGACGTCTGGTGGCTGTACGACGACGGTGGCCTCACGATGCTGCTGCCGTACATCATCACGACCCGCTCGAAGTGGGAAAAGTGTAAGATACGGGTGTTTGCACTGTCGTCCGTTAACGTGCAGGAGGAAGAGACGAACTTGAAACTGCTGCTCGACAAGCTGCGTATCAGCTACCTCAGCCTCACGATGGTCAAGGTGACGGGAC]
[+] EMBL BX615825 [GGACGGGGTCGACTTCGACCAGGGCGCCCGGTGCCTGATTCAGTCGACCGGGTTCGGCCGGCTGGCACCGAACATTCTCATGCTGGGCTACAAAACCAACTGGCGGGCGGCGAACCATCAGCAGCTGAATGCGTACTACAACACATTGCATACCGCGTTCGATAACCGGCTCGCCCTGCTGATTCTGCGCATGGGCAAGGGGCTCGACATCTTCAAGGGCCTGTCGAGCAGTGACCTCTACACGACCGTTCCCTCGCCCCAGGAAACGACCGTATCGTTCACCTCGAAGCGGATGGCCGCTCGCCGCTCGCTAATGCCCGTAAACTCCAATCTCGACCTGCACGAGCTGATGCAGTCGAACCGTTCCAGCCAGACGTCCCCAGCGCCCACGTTCCACGCTGCACCGGCGTTCGACTATCCGTCGCCGCCGGTCGTTCCGGCCGAACCGGAAGCGAACCTGTTCAAGCAGAAGCAACCGAAGGGCACGATCGACGTCTGGTGGCTGTACGACGACGGTGGCCTCACGATGCTGCTGCCGTACATCATCACGACCCGCTCGAAGTGGGAAAAGTGTAAGATACGGGTGTTTGCACTGTCGTCCGTTAACGTGCAGGAGGAAGAGACGAACTTGAAACTGCTGCTCGACAAGCTGCGTATCAGCTACCTCAGCCTCACGATGGTCAAGGTGACGGGAC]
consensusID : consensus_1355#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence
[GATCGCCCGAGGNTAGGTCGGCCGGCTGGCACCGAACATTCTCATGCTGGGCTACAAAACCAACTGGCGGGCGGCGAACCATCAGCAGCTGAATGCGTACTACAACACATTGCATACCGCGTTCGATAACCGGCTCGCCCTGCTGATTCTGCGCATGGGCAAGGGGCTCGACATCTTCAAGGGCCTGTCGAGCAGTGACCTCTACACGACCGTTCCCTCGCCCCAGGAAACGACCGTATCGTTCACCTCGAAGCGGATGGCCGCTCGCCGCTCGCTAATGCCCGTAAACTCCAATCTCGACCTGCACGAGCTGATGCAGTCGAACCGTTCCAGCCAGACGTCCCCAGCGCCCACGTTCCACGCTGCACCGGCGTTCGACTATCCGTCGCCGCCGGTCGTTCCGGCCGAACCGGAAGCGAACCTGTTCAAGCAGAAGCAACCGAAGGGCACGATCGACGTCTGGTGGCTGTACGACGACGGTGGCCTCACGATGCTGCTGCCGTACATCATCACGANCCGCTCGAAGTGGGAAAAGTGTAAGATACGGGTGTTTGCACTGTCGTCCGTTAACGTGCAGGAGGAAGAGACGAACTTGAAACTGCTGCTCGACAAGCTG]
[+] EMBL AL933734 [GATCGCCCGAGGNTAGGTCGGCCGGCTGGCACCGAACATTCTCATGCTGGGCTACAAAACCAACTGGCGGGCGGCGAACCATCAGCAGCTGAATGCGTACTACAACACATTGCATACCGCGTTCGATAACCGGCTCGCCCTGCTGATTCTGCGCATGGGCAAGGGGCTCGACATCTTCAAGGGCCTGTCGAGCAGTGACCTCTACACGACCGTTCCCTCGCCCCAGGAAACGACCGTATCGTTCACCTCGAAGCGGATGGCCGCTCGCCGCTCGCTAATGCCCGTAAACTCCAATCTCGACCTGCACGAGCTGATGCAGTCGAACCGTTCCAGCCAGACGTCCCCAGCGCCCACGTTCCACGCTGCACCGGCGTTCGACTATCCGTCGCCGCCGGTCGTTCCGGCCGAACCGGAAGCGAACCTGTTCAAGCAGAAGCAACCGAAGGGCACGATCGACGTCTGGTGGCTGTACGACGACGGTGGCCTCACGATGCTGCTGCCGTACATCATCACGANCCGCTCGAAGTGGGAAAAGTGTAAGATACGGGTGTTTGCACTGTCGTCCGTTAACGTGCAGGAGGAAGAGACGAACTTGAAACTGCTGCTCGACAAGCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1355#0 GGACGGGGTCGACTTCGACCAGGGCGCCCGGTGCCTGATTCAGTCGACCGGGTTCGGCCG 60
consensus_1355#1 ------------------------------------GATCGCCCGAGGNTAGGTCGGCCG 24
*** * *******
consensus_1355#0 GCTGGCACCGAACATTCTCATGCTGGGCTACAAAACCAACTGGCGGGCGGCGAACCATCA 120
consensus_1355#1 GCTGGCACCGAACATTCTCATGCTGGGCTACAAAACCAACTGGCGGGCGGCGAACCATCA 84
************************************************************
consensus_1355#0 GCAGCTGAATGCGTACTACAACACATTGCATACCGCGTTCGATAACCGGCTCGCCCTGCT 180
consensus_1355#1 GCAGCTGAATGCGTACTACAACACATTGCATACCGCGTTCGATAACCGGCTCGCCCTGCT 144
************************************************************
consensus_1355#0 GATTCTGCGCATGGGCAAGGGGCTCGACATCTTCAAGGGCCTGTCGAGCAGTGACCTCTA 240
consensus_1355#1 GATTCTGCGCATGGGCAAGGGGCTCGACATCTTCAAGGGCCTGTCGAGCAGTGACCTCTA 204
************************************************************
consensus_1355#0 CACGACCGTTCCCTCGCCCCAGGAAACGACCGTATCGTTCACCTCGAAGCGGATGGCCGC 300
consensus_1355#1 CACGACCGTTCCCTCGCCCCAGGAAACGACCGTATCGTTCACCTCGAAGCGGATGGCCGC 264
************************************************************
consensus_1355#0 TCGCCGCTCGCTAATGCCCGTAAACTCCAATCTCGACCTGCACGAGCTGATGCAGTCGAA 360
consensus_1355#1 TCGCCGCTCGCTAATGCCCGTAAACTCCAATCTCGACCTGCACGAGCTGATGCAGTCGAA 324
************************************************************
consensus_1355#0 CCGTTCCAGCCAGACGTCCCCAGCGCCCACGTTCCACGCTGCACCGGCGTTCGACTATCC 420
consensus_1355#1 CCGTTCCAGCCAGACGTCCCCAGCGCCCACGTTCCACGCTGCACCGGCGTTCGACTATCC 384
************************************************************
consensus_1355#0 GTCGCCGCCGGTCGTTCCGGCCGAACCGGAAGCGAACCTGTTCAAGCAGAAGCAACCGAA 480
consensus_1355#1 GTCGCCGCCGGTCGTTCCGGCCGAACCGGAAGCGAACCTGTTCAAGCAGAAGCAACCGAA 444
************************************************************
consensus_1355#0 GGGCACGATCGACGTCTGGTGGCTGTACGACGACGGTGGCCTCACGATGCTGCTGCCGTA 540
consensus_1355#1 GGGCACGATCGACGTCTGGTGGCTGTACGACGACGGTGGCCTCACGATGCTGCTGCCGTA 504
************************************************************
consensus_1355#0 CATCATCACGACCCGCTCGAAGTGGGAAAAGTGTAAGATACGGGTGTTTGCACTGTCGTC 600
consensus_1355#1 CATCATCACGANCCGCTCGAAGTGGGAAAAGTGTAAGATACGGGTGTTTGCACTGTCGTC 564
*********** ************************************************
consensus_1355#0 CGTTAACGTGCAGGAGGAAGAGACGAACTTGAAACTGCTGCTCGACAAGCTGCGTATCAG 660
consensus_1355#1 CGTTAACGTGCAGGAGGAAGAGACGAACTTGAAACTGCTGCTCGACAAGCTG-------- 616
****************************************************
consensus_1355#0 CTACCTCAGCCTCACGATGGTCAAGGTGACGGGAC 695
consensus_1355#1 -----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||