These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1358#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [CCGCGGACGCGTGGGCGAGAGGTTCCGACTGTGCGAAGGAAAAAACGGTCGCAACACAACACTATACTCACATACGGTAACGAGCACGCCCCGTGTATTACGCTTTAAAGTGCAAGTAGTAGCAACAATTACATTTGTGAAGATAATAGAGCAGCAATTTGCAGTGTTTGAGGTTACTGTGTACTAAAGAAGGGCGAATGGTATCAATGCTCGTACTACTAAGAATATGTTGTGTCTGTGTGTAAAGAAAAGCGCTCGTAAAACACACACACTTATGCAGTTAGGCGATAGGCGCACCTGCTGCGAAACAAAAGCTACGAGAAACATAATAACATTTCTCTCAAGGTGTGCATTGTAGCAAATGGTTTCGTTTGTGCACTGTGTACTGGAATAATACGTGTCTATACGATGATTATTGCAAAACAGCACAACACAATCCCTGCCAGTATAATCCCTCACCCAAGAGCAATGCATGTTGTTGTGAATGTGTGTGTGTGTGTGGTAGGGCTTAAGTGTAGTTTTTCGTGTCATTAATCAACTGCATACAGTTAATGCGTGAAGACACAAGCGCACAGCTTCTAAATGCAGGCCATTTTAAGAAGTCTTCGTGTCGACGCGCCA] [+] EMBL BM647850 [CCGCGGACGCGTGGGCGAGAGGTTCCGACTGTGCGAAGGAAAAAACGGTCGCAACACAACACTATACTCACATACGGTAACGAGCACGCCCCGTGTATTACGCTTTAAAGTGCAAGTAGTAGCAACAATTACATTTGTGAAGATAATAGAGCAGCAATTTGCAGTGTTTGAGGTTACTGTGTACTAAAGAAGGGCGAATGGTATCAATGCTCGTACTACTAAGAATATGTTGTGTCTGTGTGTAAAGAAAAGCGCTCGTAAAACACACACACTTATGCAGTTAGGCGATAGGCGCACCTGCTGCGAAACAAAAGCTACGAGAAACATAATAACATTTCTCTCAAGGTGTGCATTGTAGCAAATGGTTTCGTTTGTGCACTGTGTACTGGAATAATACGTGTCTATACGATGATTATTGCAAAACAGCACAACACAATCCCTGCCAGTATAATCCCTCACCCAAGAGCAATGCATGTTGTTGTGAATGTGTGTGTGTGTGTGGTAGGGCTTAAGTGTAGTTTTTCGTGTCATTAATCAACTGCATACAGTTAATGCGTGAAGACACAAGCGCACAGCTTCTAAATGCAGGCCATTTTAAGAAGTCTTCGTGTCGACGCGCCA] consensusID : consensus_1358#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence [GCAGAATCGCCACGAGGTGTAAAAGCGCTCGTAAAACACACACACTTATGCAGTTAGGCGATAGGCGCACCTGCTGCGAAACAAAAGCTACGAGAAACATAATAACATTTCTCTCAAGGGTGTGCATTGTAGCAAATGGTTTCGTTTGTGCACTGTGTACTGGAATAATACGTGTCTATACGATGATTATTGCAAAACAGCACAACACAAGTCCCGTGCCAGTATAATCCCTCACCCAAGAGCAAGTGCATGTTGTAGTGAATGTGTGTGTGTGTGTGGTAAGGCTTAAGTGTAGTTTNTCCGTGTCATTAATCAACTGCAGTACAGTTNAGTGCGTGAAGACACAAGCGCACAGGCTTCTAAATGCAGGCCATTTTACNCGGAAGTCTTCG] [+] EMBL BX466505 [GCAGAATCGCCACGAGGTGTAAAAGCGCTCGTAAAACACACACACTTATGCAGTTAGGCGATAGGCGCACCTGCTGCGAAACAAAAGCTACGAGAAACATAATAACATTTCTCTCAAGGGTGTGCATTGTAGCAAATGGTTTCGTTTGTGCACTGTGTACTGGAATAATACGTGTCTATACGATGATTATTGCAAAACAGCACAACACAAGTCCCGTGCCAGTATAATCCCTCACCCAAGAGCAAGTGCATGTTGTAGTGAATGTGTGTGTGTGTGTGGTAAGGCTTAAGTGTAGTTTNTCCGTGTCATTAATCAACTGCAGTACAGTTNAGTGCGTGAAGACACAAGCGCACAGGCTTCTAAATGCAGGCCATTTTACNCGGAAGTCTTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1358#0 CCGCGGACGCGTGGGCGAGAGGTTCCGACTGTGCGAAGGAAAAAACGGTCGCAACACAAC 60 consensus_1358#1 ------------------------------------------------------------ consensus_1358#0 ACTATACTCACATACGGTAACGAGCACGCCCCGTGTATTACGCTTTAAAGTGCAAGTAGT 120 consensus_1358#1 ------------------------------------------------------------ consensus_1358#0 AGCAACAATTACATTTGTGAAGATAATAGAGCAGCAATTTGCAGTGTTTGAGGTTACTGT 180 consensus_1358#1 ------------------------------------------------------------ consensus_1358#0 GTACTAAAGAAGGGCGAATGGTATCAATGCTCGTACTACTAAGAATATGTTGTGTCTGTG 240 consensus_1358#1 ------------------------------------------------GCAGAATCGCCA 12 * * ** consensus_1358#0 TGTAAAG-AAAAGCGCTCGTAAAACACACACACTTATGCAGTTAGGCGATAGGCGCACCT 299 consensus_1358#1 CGAGGTGTAAAAGCGCTCGTAAAACACACACACTTATGCAGTTAGGCGATAGGCGCACCT 72 * * **************************************************** consensus_1358#0 GCTGCGAAACAAAAGCTACGAGAAACATAATAACATTTCTCTCAAGG-TGTGCATTGTAG 358 consensus_1358#1 GCTGCGAAACAAAAGCTACGAGAAACATAATAACATTTCTCTCAAGGGTGTGCATTGTAG 132 *********************************************** ************ consensus_1358#0 CAAATGGTTTCGTTTGTGCACTGTGTACTGGAATAATACGTGTCTATACGATGATTATTG 418 consensus_1358#1 CAAATGGTTTCGTTTGTGCACTGTGTACTGGAATAATACGTGTCTATACGATGATTATTG 192 ************************************************************ consensus_1358#0 CAAAACAGCACAACACAATCCC--TGCCAGTATAATCCCTCACCCAAGAGCAA-TGCATG 475 consensus_1358#1 CAAAACAGCACAACACAAGTCCCGTGCCAGTATAATCCCTCACCCAAGAGCAAGTGCATG 252 ****************** ** ***************************** ****** consensus_1358#0 TTGTTGTGAATGTGTGTGTGTGTGTGGTAGGGCTTAAGTGTAGTTTTTC-GTGTCATTAA 534 consensus_1358#1 TTGTAGTGAATGTGTGTGTGTGTGTGGTAAGGCTTAAGTGTAGTTTNTCCGTGTCATTAA 312 **** ************************ **************** ** ********** consensus_1358#0 TCAACTGCA-TACAGTTAA-TGCGTGAAGACACAAGCGCACAG-CTTCTAAATGCAGGCC 591 consensus_1358#1 TCAACTGCAGTACAGTTNAGTGCGTGAAGACACAAGCGCACAGGCTTCTAAATGCAGGCC 372 ********* ******* * *********************** **************** consensus_1358#0 ATTTTA---AGAAGTCTTCGTGTCGACGCGCCA 621 consensus_1358#1 ATTTTACNCGGAAGTCTTCG------------- 392 ****** ********** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||