cluster # 1362

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Anopheles gambiae
cluster # 1362 cluster # 1362 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1362#0 length = 639 sequences # 1

consensus_1362#1 length = 476 sequences # 1

consensusID : consensus_1362#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 639
fasta sequence

                              [CCGATTCTTTTCTTACACGCACACATGAACACACACTCAAACACACACGCAAACTACAGGAGCAACGTTACAGACGACCATAAGGTGGGCCACCACCAGCAGGAGGAGCAAGCGGCACCAGCACCGTTGGTGCCGGGTGGTGCCGACGGTGAGCTCAACGGAACCGATGCAGACGACGAACCCGGCCATGCATCTCCGGAGCGTCCCGCCAGCCCCGTACTACTGCCCGGCCATCTGAAGAGTAGCATACAGTTTTTCGAAAGCCTCAAGAACAAACCGTAATAGCCAACCGGACACGAGAGCAGCAAAACACTCGTCTGGATGGGGATCACACTGCAAACTCACGTTGAAAGTGTACGACCTTTTTTTGTGCCATTTGTGTAGTCGCCCCAGCTGGAAGCGTCATTTAGTCATCCTTCACATCCTTCACACACACACACACATACATACACACTTACATACTCACCTGTCGCATCGTTGTCCTTCGTCATCGCTCACTCATACTTGGTAGGACTTCCGTTACGCCCCCTCGTGTTAAGGCTTTGTTTTAGGTTCGCGCGCGCGTGTGTGTTTTTGTTTCTGTGTGGTAGGCCATCTTGTTTCCTCTCGCACCAGTGGCGACATTTTTCAAGAGTCCCA]

[+] EMBL BM611456             [CCGATTCTTTTCTTACACGCACACATGAACACACACTCAAACACACACGCAAACTACAGGAGCAACGTTACAGACGACCATAAGGTGGGCCACCACCAGCAGGAGGAGCAAGCGGCACCAGCACCGTTGGTGCCGGGTGGTGCCGACGGTGAGCTCAACGGAACCGATGCAGACGACGAACCCGGCCATGCATCTCCGGAGCGTCCCGCCAGCCCCGTACTACTGCCCGGCCATCTGAAGAGTAGCATACAGTTTTTCGAAAGCCTCAAGAACAAACCGTAATAGCCAACCGGACACGAGAGCAGCAAAACACTCGTCTGGATGGGGATCACACTGCAAACTCACGTTGAAAGTGTACGACCTTTTTTTGTGCCATTTGTGTAGTCGCCCCAGCTGGAAGCGTCATTTAGTCATCCTTCACATCCTTCACACACACACACACATACATACACACTTACATACTCACCTGTCGCATCGTTGTCCTTCGTCATCGCTCACTCATACTTGGTAGGACTTCCGTTACGCCCCCTCGTGTTAAGGCTTTGTTTTAGGTTCGCGCGCGCGTGTGTGTTTTTGTTTCTGTGTGGTAGGCCATCTTGTTTCCTCTCGCACCAGTGGCGACATTTTTCAAGAGTCCCA]




>consensus_1362#0
CCGATTCTTTTCTTACACGCACACATGAACACACACTCAAACACACACGCAAACTACAGG
AGCAACGTTACAGACGACCATAAGGTGGGCCACCACCAGCAGGAGGAGCAAGCGGCACCA
GCACCGTTGGTGCCGGGTGGTGCCGACGGTGAGCTCAACGGAACCGATGCAGACGACGAA
CCCGGCCATGCATCTCCGGAGCGTCCCGCCAGCCCCGTACTACTGCCCGGCCATCTGAAG
AGTAGCATACAGTTTTTCGAAAGCCTCAAGAACAAACCGTAATAGCCAACCGGACACGAG
AGCAGCAAAACACTCGTCTGGATGGGGATCACACTGCAAACTCACGTTGAAAGTGTACGA
CCTTTTTTTGTGCCATTTGTGTAGTCGCCCCAGCTGGAAGCGTCATTTAGTCATCCTTCA
CATCCTTCACACACACACACACATACATACACACTTACATACTCACCTGTCGCATCGTTG
TCCTTCGTCATCGCTCACTCATACTTGGTAGGACTTCCGTTACGCCCCCTCGTGTTAAGG
CTTTGTTTTAGGTTCGCGCGCGCGTGTGTGTTTTTGTTTCTGTGTGGTAGGCCATCTTGT
TTCCTCTCGCACCAGTGGCGACATTTTTCAAGAGTCCCA

consensusID : consensus_1362#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 476
fasta sequence

                              [CCGTTTTATTTATGGTAATGATGACCATGATGATGATGATGGTGGAATAAAAGGTCAAGCTTAGAAAGGACTTTATCCGCCAGTCGTCCGATGTGCTGAACGAGGAAGGCATGCCCAACACGAAGGGTCAGCGGCAGTACAGTAGCACGAGCAGCATAGCGGTGCGGGACGAGATACGTGAGATCCGGAAGCTCAACCTGGAAGCGTACCGACAGTCGACGTACTACCCGATGGCTCCCGGGCACAGCATAACGGCGCGCAGCCTGTCGAAGCAAATTCGTGAGCATAAGAGCAACGTTACAGACGACCATAAGGTGGGCCACCACCAGCAGGAGGAGCAAGCGGCACCAGCACCGTTGGTGCCGGGTGGTGCCGATGGTGAGCTCAACGGAACCGATGCAGACGACGAACCCGGCCATGCATCTCCGGAGCGTCCCGCTAGCCCCGTACTACTGCCCGGCCATCTGAAGAGTAGC]

[+] EMBL BM611098             [CCGTTTTATTTATGGTAATGATGACCATGATGATGATGATGGTGGAATAAAAGGTCAAGCTTAGAAAGGACTTTATCCGCCAGTCGTCCGATGTGCTGAACGAGGAAGGCATGCCCAACACGAAGGGTCAGCGGCAGTACAGTAGCACGAGCAGCATAGCGGTGCGGGACGAGATACGTGAGATCCGGAAGCTCAACCTGGAAGCGTACCGACAGTCGACGTACTACCCGATGGCTCCCGGGCACAGCATAACGGCGCGCAGCCTGTCGAAGCAAATTCGTGAGCATAAGAGCAACGTTACAGACGACCATAAGGTGGGCCACCACCAGCAGGAGGAGCAAGCGGCACCAGCACCGTTGGTGCCGGGTGGTGCCGATGGTGAGCTCAACGGAACCGATGCAGACGACGAACCCGGCCATGCATCTCCGGAGCGTCCCGCTAGCCCCGTACTACTGCCCGGCCATCTGAAGAGTAGC]




>consensus_1362#1
CCGTTTTATTTATGGTAATGATGACCATGATGATGATGATGGTGGAATAAAAGGTCAAGC
TTAGAAAGGACTTTATCCGCCAGTCGTCCGATGTGCTGAACGAGGAAGGCATGCCCAACA
CGAAGGGTCAGCGGCAGTACAGTAGCACGAGCAGCATAGCGGTGCGGGACGAGATACGTG
AGATCCGGAAGCTCAACCTGGAAGCGTACCGACAGTCGACGTACTACCCGATGGCTCCCG
GGCACAGCATAACGGCGCGCAGCCTGTCGAAGCAAATTCGTGAGCATAAGAGCAACGTTA
CAGACGACCATAAGGTGGGCCACCACCAGCAGGAGGAGCAAGCGGCACCAGCACCGTTGG
TGCCGGGTGGTGCCGATGGTGAGCTCAACGGAACCGATGCAGACGACGAACCCGGCCATG
CATCTCCGGAGCGTCCCGCTAGCCCCGTACTACTGCCCGGCCATCTGAAGAGTAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1362#0      CCGATTCTTTTCTTACACGCACA--CATGAACAC----ACACTCAAACACACACGCAAAC 54
consensus_1362#1      CCGTTTTATTTATGGTAATGATGACCATGATGATGATGATGGTGGAATAAAAGGTCAAGC 60
                      *** **  *** *   *   *    *****  *     *   *  ** * *    *** *

consensus_1362#0      TACAGGAGCAACGTTA-CAGACGACCATAAGGTGGGCCACCACCAGCAGGAGGAGCAAGC 113
consensus_1362#1      T-TAGAAAGGACTTTATCCGCCAGTCGTCCGATGTGCTG-----AACGAGGAAGGCATGC 114
                      *  ** *   ** *** * * *   * *  * ** **       * *  *    *** **

consensus_1362#0      GGCACCAGCACCGTTGGTGCCGG-GTGGTGCCGACGGTGAGCTCAACGGAACCGATGCAG 172
consensus_1362#1      CCAACACGAAGGGTCAGCGGCAGTACAGTAGC-ACGAGCAGCATAGCGGTGCGGGACGAG 173
                         **  * *  **  * * * *    **  * ***   ***  * ***  * *    **

consensus_1362#0      A--CGACGAACCCGGCCATGCATCTCCGGAGCGTCCCGCCAGCCC-CGTACTACTGCCCG 229
consensus_1362#1      ATACGTGAGATCCGGAAGCTCAACCTGGAAGCGTACCGACAGTCGACGTACTACCCGATG 233
                      *  **    * ****     ** *   * ***** *** *** *  ********     *

consensus_1362#0      GCCATCTGAAGAGTAGCATACAGTTTTTCGAAAGCCTCAAGAACAAACCGTAATAGCCAA 289
consensus_1362#1      GC--TCCCGGGCACAGCATAACGGCGCGC---AGCCT---------GTCGAAGCAAATTC 279
                      **  **    *   ******  *     *   *****           ** *  *     

consensus_1362#0      CCGGACACGAGAGCAGCAAAACACTCGTCTGGATGGGGATCACACTGCAAACTCACGTTG 349
consensus_1362#1      GTGAGCATAAGAGCAACGTTACAGACGACCATAAGGTGGGC-CACCACCAGCAGGAGGAG 338
                        *  **  ****** *   ***  ** *   * ** *  * ***  * * *    *  *

consensus_1362#0      AAAGTG-TACGACCTTTTTTTGTGCCATTTGTGTAGTCGCCCCAGCTGGAAGCGTCATTT 408
consensus_1362#1      CAAGCGGCACCAGCACCGTTGGTGCCG-------GGTGGTGCCGATGGTGAGCTCAACGG 391
                       *** *  ** * *    ** *****         ** *  **    *  ***   *   

consensus_1362#0      AGTCATCCTTCACATCCTTCACACACACACACACATACATACACACTTACATACTCACCT 468
consensus_1362#1      AACCGATGCAGACG------ACGAACCCGGCCATGCATCTCCGGAGCGTCCCGCTAGCC- 444
                      *  *       **       **  ** *   **   *  * *  *    *   **  ** 

consensus_1362#0      GTCGCATCGTTGTCCTTCGTCATCGCTCACTCATACTTGGTAGGACTTCCGTTACGCCCC 528
consensus_1362#1      -CCGTACTACTGCCCG--GCCATC--TGAAGAGTAGC----------------------- 476
                        ** *    ** **   * ****  * *    **                         

consensus_1362#0      CTCGTGTTAAGGCTTTGTTTTAGGTTCGCGCGCGCGTGTGTGTTTTTGTTTCTGTGTGGT 588
consensus_1362#1      ------------------------------------------------------------
                                                                                  

consensus_1362#0      AGGCCATCTTGTTTCCTCTCGCACCAGTGGCGACATTTTTCAAGAGTCCCA 639
consensus_1362#1      ---------------------------------------------------