cluster # 1384

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Anopheles gambiae
cluster # 1384 cluster # 1384 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1384#0 length = 867 sequences # 1

consensus_1384#1 length = 588 sequences # 1

consensusID : consensus_1384#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 867
fasta sequence

                              [ATCGGCACGAGGGCAGCAGTCTTGATAGGTGCAGCCACAGGTATTCAGTTTTTGGTATTTGTGACACAGTTGGTATAGGAGCTGAGGTAGTATTGGTGCCTGTTATAATAGGTGGTAGTGAAGGTCGATCGATCCGGTGAGTGTTGTTGGTATTTGTGCTGCACTGTCAACAAACATGGTATCCGAGGATGCAACTACTTCGCGGAATAATCTCCGTCTTTTTCCGTTAGGAAGTGCATCCGGGTTGAAATTGGTTGCTGTGCTGGAAGGATGCTGAGTGGGACGCGGCGAATCCGGCAAAGCCATCCCGAATCTCTTGCACTACCGGTGGGACTAAGCTGGACTTCATTGCTTCAACGGCAGCTGTGAGGGCGGCTTGAAAGCCAACTTGCATACCCGTACCCTTAAACACTTTGCTTCGCGGATTATCAATCGCATTAGGTACACGCAATGCAACTCCAGTGCAGCGAAAGCATCCTTTTCACTTCGTCGATCACTGATATGGGCACTTTAGTGCACGCCAGATGATGCAAGCTGCGGATGAACGTCGAAGGAGCCACGATTAGAAGCCGAAAATATCGTTAACACAGTAGTTATCGTCAGGAAAGGCAATACTAGGATCGCCGGGAACTGCACTTATGGACTAAGCAAAAACTAGAATCACGTTAAACGAAAACCGATTAAACGGGTAAAATCGTGGATAAATTCGGAGCAGTTATGCAGTAAACACACTAAGTTTGGCAGTNCTCACACTTACTTACGACAAACTTAATTTACGACAAAACTTTTGCGCTCAGAAGGTCAAGCTAGAGGCACGTTCTTGACTGTGGCCATTTTCAAGTGATAATTCCTGAAAAACTCTCCNTG]

[+] EMBL BX467464             [ATCGGCACGAGGGCAGCAGTCTTGATAGGTGCAGCCACAGGTATTCAGTTTTTGGTATTTGTGACACAGTTGGTATAGGAGCTGAGGTAGTATTGGTGCCTGTTATAATAGGTGGTAGTGAAGGTCGATCGATCCGGTGAGTGTTGTTGGTATTTGTGCTGCACTGTCAACAAACATGGTATCCGAGGATGCAACTACTTCGCGGAATAATCTCCGTCTTTTTCCGTTAGGAAGTGCATCCGGGTTGAAATTGGTTGCTGTGCTGGAAGGATGCTGAGTGGGACGCGGCGAATCCGGCAAAGCCATCCCGAATCTCTTGCACTACCGGTGGGACTAAGCTGGACTTCATTGCTTCAACGGCAGCTGTGAGGGCGGCTTGAAAGCCAACTTGCATACCCGTACCCTTAAACACTTTGCTTCGCGGATTATCAATCGCATTAGGTACACGCAATGCAACTCCAGTGCAGCGAAAGCATCCTTTTCACTTCGTCGATCACTGATATGGGCACTTTAGTGCACGCCAGATGATGCAAGCTGCGGATGAACGTCGAAGGAGCCACGATTAGAAGCCGAAAATATCGTTAACACAGTAGTTATCGTCAGGAAAGGCAATACTAGGATCGCCGGGAACTGCACTTATGGACTAAGCAAAAACTAGAATCACGTTAAACGAAAACCGATTAAACGGGTAAAATCGTGGATAAATTCGGAGCAGTTATGCAGTAAACACACTAAGTTTGGCAGTNCTCACACTTACTTACGACAAACTTAATTTACGACAAAACTTTTGCGCTCAGAAGGTCAAGCTAGAGGCACGTTCTTGACTGTGGCCATTTTCAAGTGATAATTCCTGAAAAACTCTCCNTG]




>consensus_1384#0
ATCGGCACGAGGGCAGCAGTCTTGATAGGTGCAGCCACAGGTATTCAGTTTTTGGTATTT
GTGACACAGTTGGTATAGGAGCTGAGGTAGTATTGGTGCCTGTTATAATAGGTGGTAGTG
AAGGTCGATCGATCCGGTGAGTGTTGTTGGTATTTGTGCTGCACTGTCAACAAACATGGT
ATCCGAGGATGCAACTACTTCGCGGAATAATCTCCGTCTTTTTCCGTTAGGAAGTGCATC
CGGGTTGAAATTGGTTGCTGTGCTGGAAGGATGCTGAGTGGGACGCGGCGAATCCGGCAA
AGCCATCCCGAATCTCTTGCACTACCGGTGGGACTAAGCTGGACTTCATTGCTTCAACGG
CAGCTGTGAGGGCGGCTTGAAAGCCAACTTGCATACCCGTACCCTTAAACACTTTGCTTC
GCGGATTATCAATCGCATTAGGTACACGCAATGCAACTCCAGTGCAGCGAAAGCATCCTT
TTCACTTCGTCGATCACTGATATGGGCACTTTAGTGCACGCCAGATGATGCAAGCTGCGG
ATGAACGTCGAAGGAGCCACGATTAGAAGCCGAAAATATCGTTAACACAGTAGTTATCGT
CAGGAAAGGCAATACTAGGATCGCCGGGAACTGCACTTATGGACTAAGCAAAAACTAGAA
TCACGTTAAACGAAAACCGATTAAACGGGTAAAATCGTGGATAAATTCGGAGCAGTTATG
CAGTAAACACACTAAGTTTGGCAGTNCTCACACTTACTTACGACAAACTTAATTTACGAC
AAAACTTTTGCGCTCAGAAGGTCAAGCTAGAGGCACGTTCTTGACTGTGGCCATTTTCAA
GTGATAATTCCTGAAAAACTCTCCNTG

consensusID : consensus_1384#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 588
fasta sequence

                              [TGAGTGTTGTTGGTATTTGTGCTGCACTGTCAACAAACATGGTATCCGAGGATGCAACTACTTCGCGGAATAATCTCCGTCTTTTTCCGTTAGGAAGTGCATCCGGGTTGAAATTGGTTGCTGTGCTGGAAGGATGCTGAGTGGGACGCGGCGAATCCGGAAAAGCCATCCCGAATCTCTTGCACTACCGGTGGGACTAAGCTGGACTTCATTGCTTCAACGGCAGCTGTGAGGGCGGCTTGAAAGCCAACTTGCATACCCGTACCCTTAAACACTTTGCTTCGCGGATTATCAATCGCATTAGTACACGCAATGCAACTCCAGTGCAGCGAAAGCATCCTTTTCACTTCGTCGATCACTGATATGGGCACTTTAGTGCACGCCAGATGGTAAGTACCCTCACAATATAGGCAGGTAATTGAGCCTTCAACCGGGCCCAGTGCATCAGAACATGCATGACACACGTCCTCTATTTTAGATGCAAGCTGCGGATGAACGTCGAAGGAGCCACGATTAGAAGCCGAAAATATCGTTAACACAGTAGTTATCGTCAGGAAAGCAATACTAGGATCGCGGGAACTGCACCGG]

[-] EMBL BM648048             [TGAGTGTTGTTGGTATTTGTGCTGCACTGTCAACAAACATGGTATCCGAGGATGCAACTACTTCGCGGAATAATCTCCGTCTTTTTCCGTTAGGAAGTGCATCCGGGTTGAAATTGGTTGCTGTGCTGGAAGGATGCTGAGTGGGACGCGGCGAATCCGGAAAAGCCATCCCGAATCTCTTGCACTACCGGTGGGACTAAGCTGGACTTCATTGCTTCAACGGCAGCTGTGAGGGCGGCTTGAAAGCCAACTTGCATACCCGTACCCTTAAACACTTTGCTTCGCGGATTATCAATCGCATTAGTACACGCAATGCAACTCCAGTGCAGCGAAAGCATCCTTTTCACTTCGTCGATCACTGATATGGGCACTTTAGTGCACGCCAGATGGTAAGTACCCTCACAATATAGGCAGGTAATTGAGCCTTCAACCGGGCCCAGTGCATCAGAACATGCATGACACACGTCCTCTATTTTAGATGCAAGCTGCGGATGAACGTCGAAGGAGCCACGATTAGAAGCCGAAAATATCGTTAACACAGTAGTTATCGTCAGGAAAGCAATACTAGGATCGCGGGAACTGCACCGG]




>consensus_1384#1
TGAGTGTTGTTGGTATTTGTGCTGCACTGTCAACAAACATGGTATCCGAGGATGCAACTA
CTTCGCGGAATAATCTCCGTCTTTTTCCGTTAGGAAGTGCATCCGGGTTGAAATTGGTTG
CTGTGCTGGAAGGATGCTGAGTGGGACGCGGCGAATCCGGAAAAGCCATCCCGAATCTCT
TGCACTACCGGTGGGACTAAGCTGGACTTCATTGCTTCAACGGCAGCTGTGAGGGCGGCT
TGAAAGCCAACTTGCATACCCGTACCCTTAAACACTTTGCTTCGCGGATTATCAATCGCA
TTAGTACACGCAATGCAACTCCAGTGCAGCGAAAGCATCCTTTTCACTTCGTCGATCACT
GATATGGGCACTTTAGTGCACGCCAGATGGTAAGTACCCTCACAATATAGGCAGGTAATT
GAGCCTTCAACCGGGCCCAGTGCATCAGAACATGCATGACACACGTCCTCTATTTTAGAT
GCAAGCTGCGGATGAACGTCGAAGGAGCCACGATTAGAAGCCGAAAATATCGTTAACACA
GTAGTTATCGTCAGGAAAGCAATACTAGGATCGCGGGAACTGCACCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1384#0      ATCGGCACGAGGGCAGCAGTCTTGATAGGTGCAGCCACAGGTATTCAGTTTTTGGTATTT 60
consensus_1384#1      ------------------------------------------------------------
                                                                                  

consensus_1384#0      GTGACACAGTTGGTATAGGAGCTGAGGTAGTATTGGTGCCTGTTATAATAGGTGGTAGTG 120
consensus_1384#1      ------------------------------------------------------------
                                                                                  

consensus_1384#0      AAGGTCGATCGATCCGGTGAGTGTTGTTGGTATTTGTGCTGCACTGTCAACAAACATGGT 180
consensus_1384#1      -----------------TGAGTGTTGTTGGTATTTGTGCTGCACTGTCAACAAACATGGT 43
                                       *******************************************

consensus_1384#0      ATCCGAGGATGCAACTACTTCGCGGAATAATCTCCGTCTTTTTCCGTTAGGAAGTGCATC 240
consensus_1384#1      ATCCGAGGATGCAACTACTTCGCGGAATAATCTCCGTCTTTTTCCGTTAGGAAGTGCATC 103
                      ************************************************************

consensus_1384#0      CGGGTTGAAATTGGTTGCTGTGCTGGAAGGATGCTGAGTGGGACGCGGCGAATCCGGCAA 300
consensus_1384#1      CGGGTTGAAATTGGTTGCTGTGCTGGAAGGATGCTGAGTGGGACGCGGCGAATCCGGAAA 163
                      ********************************************************* **

consensus_1384#0      AGCCATCCCGAATCTCTTGCACTACCGGTGGGACTAAGCTGGACTTCATTGCTTCAACGG 360
consensus_1384#1      AGCCATCCCGAATCTCTTGCACTACCGGTGGGACTAAGCTGGACTTCATTGCTTCAACGG 223
                      ************************************************************

consensus_1384#0      CAGCTGTGAGGGCGGCTTGAAAGCCAACTTGCATACCCGTACCCTTAAACACTTTGCTTC 420
consensus_1384#1      CAGCTGTGAGGGCGGCTTGAAAGCCAACTTGCATACCCGTACCCTTAAACACTTTGCTTC 283
                      ************************************************************

consensus_1384#0      GCGGATTATCAATCGCATTAGGTACACGCAATGCAACTCCAGTGCAGCGAAAGCATCCTT 480
consensus_1384#1      GCGGATTATCAATCGCATTAG-TACACGCAATGCAACTCCAGTGCAGCGAAAGCATCCTT 342
                      ********************* **************************************

consensus_1384#0      TTCACTTCGTCGATCACTGATATGGGCACTTTAGTGCACGCCAGATGATGCAAGCTGCGG 540
consensus_1384#1      TTCACTTCGTCGATCACTGATATGGGCACTTTAGTGCACGCCAGATG--GTAAGTACCCT 400
                      ***********************************************  * ***   *  

consensus_1384#0      ATGAACGTCGAAGGAGCCACGATTAGAAGCCGAAAATATCGTTAACACAGTAGTTATCGT 600
consensus_1384#1      CACAATATAGGCAGG----TAATT-GAGCCTTCAACCGGGCCCAGTGCATCAGAACATGC 455
                         **  * *   *       *** **  *   **        *   **  **     * 

consensus_1384#0      CAGGAAAGGCAATACTAGGATCGCCGGGAACTGCACTTATGGACTAAGCAAAAACTAGAA 660
consensus_1384#1      ATGACACACGTCCTCTATTTTAGATGCAAGCTGCGG--ATGAACGTCGAAGGAGCCACGA 513
                        *  *        ***   * *  *  * ****    *** **   * *  * * *  *

consensus_1384#0      TCACGTTAAACGAAAACCGATTAAACGGGTAAAATCGTGGATAAATTCGGAGCAGTTATG 720
consensus_1384#1      TTAGAAGCCGAAAATATCGTTAACACAGTAGTTATCGTCAGGAAAGCAATACTAGGATCG 573
                      * *         ** * ** * * ** *     *****    ***     *  **    *

consensus_1384#0      CAGTAAACACACTAAGTTTGGCAGTNCTCACACTTACTTACGACAAACTTAATTTACGAC 780
consensus_1384#1      CGGGAACTGCACCGG--------------------------------------------- 588
                      * * **   ***                                                

consensus_1384#0      AAAACTTTTGCGCTCAGAAGGTCAAGCTAGAGGCACGTTCTTGACTGTGGCCATTTTCAA 840
consensus_1384#1      ------------------------------------------------------------
                                                                                  

consensus_1384#0      GTGATAATTCCTGAAAAACTCTCCNTG 867
consensus_1384#1      ---------------------------