cluster # 1393

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Anopheles gambiae
cluster # 1393 cluster # 1393 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1393#0 length = 688 sequences # 1

consensus_1393#1 length = 396 sequences # 1

consensusID : consensus_1393#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 688
fasta sequence

                              [CCGCGACTCTAGTCGGCTCCAACAACATTTCGCTCAACAAGAAGGGTCGGAAGTCGTCCTCTGTTAGTGCTGTACAGCAGCAGCAGCAGCAGCAGCAACATCACCACCTCCTCCAACAGTCACATGCAGGCCATGGACATGGAACATTGCCCCCCGCCAGTAGCCCGAAAGCGGCGAAAAAAGCAATCCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAGAATCCGTACCAACAGCACCACGCGGCGGTATCATTCGTCGGAAGCCCGATTGCCAGTCCCAGTCCGATCGCAAGTCCGAACGGCAGCTCGATACTGGTCACTACCGGCAGCGGCACCGGCGTGGCAGCTGGAACGTCCAGCGCGACAAACATGAGGCCACCGACACCGCAACCTATCATTCAGCAGTATCCTGTTGTGGGCACCGGAAATCAAATAGTGCAAATTTTCCAAGGTTCCCAGTTTGCAATTACCCAGTCACAGGCGGCACAGCAGCACCATCATCAGCTGCAGCAGCAGAGCGGGCGCCACACCACAACAATCGTATCCCAGCCCAGCCCCCAGCAACAGCAGCAGCAGCAACAACTAAACCAAACGAGCGTTCAGCAGCAACACATACCGCTGCAGCAGCTCCACACGATCCAGCAGTCGCCCTCGCACCAGCAACAGTTTGTGCAGCAGCAAATCAT]

[+] EMBL BM645096             [CCGCGACTCTAGTCGGCTCCAACAACATTTCGCTCAACAAGAAGGGTCGGAAGTCGTCCTCTGTTAGTGCTGTACAGCAGCAGCAGCAGCAGCAGCAACATCACCACCTCCTCCAACAGTCACATGCAGGCCATGGACATGGAACATTGCCCCCCGCCAGTAGCCCGAAAGCGGCGAAAAAAGCAATCCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAGAATCCGTACCAACAGCACCACGCGGCGGTATCATTCGTCGGAAGCCCGATTGCCAGTCCCAGTCCGATCGCAAGTCCGAACGGCAGCTCGATACTGGTCACTACCGGCAGCGGCACCGGCGTGGCAGCTGGAACGTCCAGCGCGACAAACATGAGGCCACCGACACCGCAACCTATCATTCAGCAGTATCCTGTTGTGGGCACCGGAAATCAAATAGTGCAAATTTTCCAAGGTTCCCAGTTTGCAATTACCCAGTCACAGGCGGCACAGCAGCACCATCATCAGCTGCAGCAGCAGAGCGGGCGCCACACCACAACAATCGTATCCCAGCCCAGCCCCCAGCAACAGCAGCAGCAGCAACAACTAAACCAAACGAGCGTTCAGCAGCAACACATACCGCTGCAGCAGCTCCACACGATCCAGCAGTCGCCCTCGCACCAGCAACAGTTTGTGCAGCAGCAAATCAT]




>consensus_1393#0
CCGCGACTCTAGTCGGCTCCAACAACATTTCGCTCAACAAGAAGGGTCGGAAGTCGTCCT
CTGTTAGTGCTGTACAGCAGCAGCAGCAGCAGCAGCAACATCACCACCTCCTCCAACAGT
CACATGCAGGCCATGGACATGGAACATTGCCCCCCGCCAGTAGCCCGAAAGCGGCGAAAA
AAGCAATCCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAGAATCCGTACCAACAGCACC
ACGCGGCGGTATCATTCGTCGGAAGCCCGATTGCCAGTCCCAGTCCGATCGCAAGTCCGA
ACGGCAGCTCGATACTGGTCACTACCGGCAGCGGCACCGGCGTGGCAGCTGGAACGTCCA
GCGCGACAAACATGAGGCCACCGACACCGCAACCTATCATTCAGCAGTATCCTGTTGTGG
GCACCGGAAATCAAATAGTGCAAATTTTCCAAGGTTCCCAGTTTGCAATTACCCAGTCAC
AGGCGGCACAGCAGCACCATCATCAGCTGCAGCAGCAGAGCGGGCGCCACACCACAACAA
TCGTATCCCAGCCCAGCCCCCAGCAACAGCAGCAGCAGCAACAACTAAACCAAACGAGCG
TTCAGCAGCAACACATACCGCTGCAGCAGCTCCACACGATCCAGCAGTCGCCCTCGCACC
AGCAACAGTTTGTGCAGCAGCAAATCAT

consensusID : consensus_1393#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 396
fasta sequence

                              [AATCCGAACAACTTCGTTACCAACAGTCTTCAACAGCAGCAACAAATACAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAATTACAGCAACAGCAACAGCAAACTATACAACCATTAGTTGCTCAAGTGCATCCTCAGCAACATCAGTCAGCGAAATTGGCTGGATCTACGACCATGGTCGTAAAAGGTACTATCGGTTCCACCACCGTTACGGCCACAGCACCGGCAGCCCCAGCCAGTAACAACATTACCGTCACGGCAACACCCATCAAGAAGGCCAGAGCCAACATCGTTACACAGCAGCTCCACACGATCCAGCAGTCGCCCTCGCACCAGCAACAGTTCGTGCAGCAGCAAATCATAGCCACTTCCGTGGCGCCGAGC]

[+] EMBL AGA285628            [AATCCGAACAACTTCGTTACCAACAGTCTTCAACAGCAGCAACAAATACAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAATTACAGCAACAGCAACAGCAAACTATACAACCATTAGTTGCTCAAGTGCATCCTCAGCAACATCAGTCAGCGAAATTGGCTGGATCTACGACCATGGTCGTAAAAGGTACTATCGGTTCCACCACCGTTACGGCCACAGCACCGGCAGCCCCAGCCAGTAACAACATTACCGTCACGGCAACACCCATCAAGAAGGCCAGAGCCAACATCGTTACACAGCAGCTCCACACGATCCAGCAGTCGCCCTCGCACCAGCAACAGTTCGTGCAGCAGCAAATCATAGCCACTTCCGTGGCGCCGAGC]




>consensus_1393#1
AATCCGAACAACTTCGTTACCAACAGTCTTCAACAGCAGCAACAAATACAACAGCAGCAA
CAGCAGCAACAGCAGCAACAGCAGCAACAGCAATTACAGCAACAGCAACAGCAAACTATA
CAACCATTAGTTGCTCAAGTGCATCCTCAGCAACATCAGTCAGCGAAATTGGCTGGATCT
ACGACCATGGTCGTAAAAGGTACTATCGGTTCCACCACCGTTACGGCCACAGCACCGGCA
GCCCCAGCCAGTAACAACATTACCGTCACGGCAACACCCATCAAGAAGGCCAGAGCCAAC
ATCGTTACACAGCAGCTCCACACGATCCAGCAGTCGCCCTCGCACCAGCAACAGTTCGTG
CAGCAGCAAATCATAGCCACTTCCGTGGCGCCGAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1393#0      CCGCGACTCTAGTCGGCTCCAACAACATTTCGCTCAACAAGAAGGGTCGGAAGTCGTCCT 60
consensus_1393#1      ------------------------------------------------------------
                                                                                  

consensus_1393#0      CTGTTAGTGCTGTACAGCAGCAGCAGCAGCAGCAGCAACATCACCACCTCCTCCAACAGT 120
consensus_1393#1      ------------------------------------------------------------
                                                                                  

consensus_1393#0      CACATGCAGGCCATGGACATGGAACATTGCCCCCCGCCAGTAGCCCGAAAGCGGCGAAAA 180
consensus_1393#1      ------------------------------------------------------------
                                                                                  

consensus_1393#0      AAGCAATCCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAGAATCCGTACCAACAGCACC 240
consensus_1393#1      ------------------------------------------------------------
                                                                                  

consensus_1393#0      ACGCGGCGGTATCATTCGTCGGAAGCCCGATTGCCAGTCCCAGTCCGATCGCAAGTCCGA 300
consensus_1393#1      -----------------------AATCCGA---ACAACTTCGTTACCA--ACAGTCTTCA 32
                                             *  ****    **    *  * * *   **      *

consensus_1393#0      ACGGCAGCTCGATACTGGTCACTACCGGCAGCGGCACCGGC-GTGGCAGCTGGAACGTCC 359
consensus_1393#1      ACAGCAGCAACAAATACAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCA 92
                      ** *****   * *     **  * *  **** *** * ** *   **** * ***  * 

consensus_1393#0      AGCGCGACAAACATGA-GGCCACCGACACCGCAACCTATCATTCAGCAGTATCCTGTTGT 418
consensus_1393#1      ATTACAGCAACAGCAACAGCAAACTATACAACCATTAGTTGCTCAAGTGCATCCTC---- 148
                      *   *  ***     *  ** * * * **  * *    *   ***   * *****     

consensus_1393#0      GGGCACCGGAAATCAAATAGTGCAAATTTTCCAAGGTTCCCAGTTTGCAATTACCCAGTC 478
consensus_1393#1      -AGCAAC----ATCAGTCAGCG-AAATTGGCTGGA--------TCTACGACCA--TGGTC 192
                        *** *    ****   ** * *****  *            * * * *  *    ***

consensus_1393#0      ACAGGCGGCACAGCAGCACCATCATCAGCTGCAGCAGCAGAGCGGGCGCCACACCACAAC 538
consensus_1393#1      GTAAAAGGTAC-----------TATCGGTTCCACCACCGTTACGG--------CCACAGC 233
                        *   ** **            *** * * ** ** *    ***        ***** *

consensus_1393#0      AATCGTATCCCAGCCCAGCCCCCAGCAACAGCAGCAGCAGCAACAACTAAACCAAACGAG 598
consensus_1393#1      ACCGGCAGCCC----CAG---CCAGTAACAACATTACCGTCA-CGGCAACACCCATCAAG 285
                      *   * * ***    ***   **** **** **  * *  ** *  * * *** * * **

consensus_1393#0      CGTTCAGCAGCAACACATACCGCTGCAGCAGCTCCACACGATCCAGCAGTCGCCCTCGCA 658
consensus_1393#1      AAGGCCAGAGCCA-ACATCGTTACACAGCAGCTCCACACGATCCAGCAGTCGCCCTCGCA 344
                          *   *** * ****       ***********************************

consensus_1393#0      CCAGCAACAGTTTGTGCAGCAGCAAATCAT---------------------- 688
consensus_1393#1      CCAGCAACAGTTCGTGCAGCAGCAAATCATAGCCACTTCCGTGGCGCCGAGC 396
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