These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1429#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence [CCGGTGGTGCGCTTTTCCTCATCGCATCGTGTGAAAAGTTAGTGAAAAGTAAGCGCGGCGCAAAACGAAGGTAATTAGCGGTGCCGAAATCGGTTGTGAGTTGTGACAGAGTGTTTGAGTGCGTGTGTGTGTGGGAGCGCTGCTAGAAGTGCATTCCAGGTGAGCAGGCAGGGTGGTAGTGCCGCCGTCGCGGGCGGGCGAGCGGCGAGGTGGGAAACGAAAAGTTGTGACGTTGGCCGTGATCTAACTAAGCGCGTTCCAGCACAAGTTCCGTCGCGGAGAAGAGATCCCGCAAACCACTGCAAGCCAGCGTGCGCCGCCAGCTAGTGCACGGTTTGTTTGCTTTTTAGGGTAATGCAACGCAGCCAGCCCTGCGAGCATCCGCCCCGCAACAACAACAACAACAACAATAGCTGCAGCAACAAGGGCAGTGAAGATGGCGGCGACTTCATCGAACAACAGTAATAGCAATAGCATCAGCCCCACCAATAACAACAACAACAACAACAACAACGTGCACATCGAAACAGATGAGTTCATCAAGAAGAGCCGGGTGACGCGGGCGGCCCCACCGAAACCGGCCTACGATCCGCTACAGTTCGTGCAGATCAAGCCGGCCAAGCTGTACGATCGGAGCAAGGCGAACAACAAACCGTCGACCGAGCGGGA] [+] EMBL BM655526 [CCGGTGGTGCGCTTTTCCTCATCGCATCGTGTGAAAAGTTAGTGAAAAGTAAGCGCGGCGCAAAACGAAGGTAATTAGCGGTGCCGAAATCGGTTGTGAGTTGTGACAGAGTGTTTGAGTGCGTGTGTGTGTGGGAGCGCTGCTAGAAGTGCATTCCAGGTGAGCAGGCAGGGTGGTAGTGCCGCCGTCGCGGGCGGGCGAGCGGCGAGGTGGGAAACGAAAAGTTGTGACGTTGGCCGTGATCTAACTAAGCGCGTTCCAGCACAAGTTCCGTCGCGGAGAAGAGATCCCGCAAACCACTGCAAGCCAGCGTGCGCCGCCAGCTAGTGCACGGTTTGTTTGCTTTTTAGGGTAATGCAACGCAGCCAGCCCTGCGAGCATCCGCCCCGCAACAACAACAACAACAACAATAGCTGCAGCAACAAGGGCAGTGAAGATGGCGGCGACTTCATCGAACAACAGTAATAGCAATAGCATCAGCCCCACCAATAACAACAACAACAACAACAACAACGTGCACATCGAAACAGATGAGTTCATCAAGAAGAGCCGGGTGACGCGGGCGGCCCCACCGAAACCGGCCTACGATCCGCTACAGTTCGTGCAGATCAAGCCGGCCAAGCTGTACGATCGGAGCAAGGCGAACAACAAACCGTCGACCGAGCGGGA] consensusID : consensus_1429#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence [CCGCCCACGCGTCCGGTACAAAAAGCTAGTGCGCGGAGGTGGTGCGCTTTTCCTCATCGCATCGTGTGAAAAGTTAGTGAAAAGTAAGCGCGGCGCAAAACGAAGATGGCGGCGACTTCATCGAACAACAGTAATAGCAATAGCATCAGCCCCACCAATAACAACAACAACAACAACAACAACGTGCACATCGAAACAGATGAGTTCATCAAGAAGAGCCGGGTGACGCGGGCGGCCCCACCGAAACCGGCCTACGATCCGCTACAGTTCGTGCAGATCAAGCCGGCCAAGCTGTACGATCCGAGCAAGGCGAACAACAAACCGTCGACCGAGCGGAAGCAGCAGGAGGTGAAGCCGCCCCGGGAGGTGGAGGACGCGGAGGAATGGCAGTGCAATCTGGACAATTGGAAGTCGTCGCGCAGGAAACGGGTGGAGCACATTATCGACAAGATTACCGAGGCGAAGAAGATCGAGCAGGAGGAGGTGTGCCGGGCGCGCAAAAAGTCGAAAACGTTTTCGGAAATGCTGGAAAACAGTGGATCGCGCCGACGGTTCATACTGCCGGAGAACGAGGACGATGACGAAGGGGCGAACTTTAGCAGCGACGATCTGCATGATCCCACCGATACCTCCAAGCAGCAGCAGCAGTAC] [+] EMBL BM610560 [CCGCCCACGCGTCCGGTACAAAAAGCTAGTGCGCGGAGGTGGTGCGCTTTTCCTCATCGCATCGTGTGAAAAGTTAGTGAAAAGTAAGCGCGGCGCAAAACGAAGATGGCGGCGACTTCATCGAACAACAGTAATAGCAATAGCATCAGCCCCACCAATAACAACAACAACAACAACAACAACGTGCACATCGAAACAGATGAGTTCATCAAGAAGAGCCGGGTGACGCGGGCGGCCCCACCGAAACCGGCCTACGATCCGCTACAGTTCGTGCAGATCAAGCCGGCCAAGCTGTACGATCCGAGCAAGGCGAACAACAAACCGTCGACCGAGCGGAAGCAGCAGGAGGTGAAGCCGCCCCGGGAGGTGGAGGACGCGGAGGAATGGCAGTGCAATCTGGACAATTGGAAGTCGTCGCGCAGGAAACGGGTGGAGCACATTATCGACAAGATTACCGAGGCGAAGAAGATCGAGCAGGAGGAGGTGTGCCGGGCGCGCAAAAAGTCGAAAACGTTTTCGGAAATGCTGGAAAACAGTGGATCGCGCCGACGGTTCATACTGCCGGAGAACGAGGACGATGACGAAGGGGCGAACTTTAGCAGCGACGATCTGCATGATCCCACCGATACCTCCAAGCAGCAGCAGCAGTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1429#0 -----------------------------------CCGGTGGTGCGCTTTTCCTCATCGC 25 consensus_1429#1 CCGCCCACGCGTCCGGTACAAAAAGCTAGTGCGCGGAGGTGGTGCGCTTTTCCTCATCGC 60 *********************** consensus_1429#0 ATCGTGTGAAAAGTTAGTGAAAAGTAAGCGCGGCGCAAAACGAAGGTAATTAGCGGTGCC 85 consensus_1429#1 ATCGTGTGAAAAGTTAGTGAAAAGTAAGCGCGGCGCAAAACGAAGATG----GCGGCGAC 116 ********************************************* * **** * * consensus_1429#0 GAAATCGGTTGTGAGTTGTGACAGAGTGTTTGAGTGCGTGTGTGTGTGGGAGCGCTGCTA 145 consensus_1429#1 TTCATCGAACAACAGTAATAGCAATAGCATCAGCCCCACCAATAACAACAACAACAACAA 176 **** *** * ** * * * * * * * consensus_1429#0 GAAGTGCATTC-CAGGTGAGCAGGCAGGGTGGT-----AGTGCCGC-CGTCGCGGGCGGG 198 consensus_1429#1 CAACAACGTGCACATCGAAACAGATGAGTTCATCAAGAAGAGCCGGGTGACGCGGGCGGC 236 ** * * * ** * *** * * * ** **** * ********* consensus_1429#0 CGAGCGGCGAGGTGGGAAACGAAAAGTTGTGACGTTGGCCGTGATCTAACTAAGCGCGTT 258 consensus_1429#1 CCCACCG-AAACCGGCCTACGATCCGCTACA--GTTCGTGCAGATCAAGCCGGCCAAGCT 293 * * * * ** **** * * *** * **** * * * * * consensus_1429#0 CCAGCACAAGTTCCGTCGCGGAGAAGAGATCCCGCAAACCACTGCAAGCCAGCGTGCGCC 318 consensus_1429#1 ---GTACGATCCGAGCAAGGCGAACAACAAACCGTCGACCGAGCGGAAGCAGCAGGAGGT 350 * ** * * * * * * *** *** * **** * * consensus_1429#0 GCCAGCTAGTGCACGGTTTGTTTGCTTTTTAGGGTAATGCAACGCAGCCAGCCCTGCGAG 378 consensus_1429#1 GA-AGCCGCCCCGGGAGGTGGAGGACGCGGAGGA-ATGGCAGTGCAATCTGGACAATTGG 408 * *** * * ** * *** * *** *** * * * * consensus_1429#0 CATCCGCCCCGCAACAACAACAACAACAACAATAGCTGCAGCAACAAGGGCAGTGAAGAT 438 consensus_1429#1 AAGTCGTCGCGCAGGA--AACGGGTGGAGCA----CATTATCGACAAGATTACCGA---- 458 * ** * **** * *** * ** * * * ***** * ** consensus_1429#0 GGCGGCGACTTCATCGAACAACAGTAATAGCAATAG-CATCAGCCCCACCAATAACAACA 497 consensus_1429#1 GGCGAAGAAG--ATCGAGCAGGAGGAGGTGTGCCGGGCGCGCAAAAAGTCGAAAACGTTT 516 **** ** ***** ** ** * * * * * * *** consensus_1429#0 ACAACAACAACAACAACGTGCACATCGAAACAGATGAGTTCATCAAGAAGAGCCGGGTGA 557 consensus_1429#1 TCGGAAATGCTGGAAAACAGTGGATCGCGCC-GACG-GTTCAT-----ACTGCCGGAGAA 569 * ** ** * **** * ** * ****** * ***** * consensus_1429#0 CGCGGGCGGCCCCACCGAAACCGGCCTACGATCCGCTACAGTTCGTGCAGATCAAGCCGG 617 consensus_1429#1 CGAGGACGATGACGAAGGGGCGAACTTTAG--CAGCGACGATCTGCAT-GATCCCACCGA 626 ** ** ** * * * * * * * ** ** * * **** *** consensus_1429#0 CCAAGCTGTACGATCGGAGCAAGGCGAACAACAAACCGTCGACCGAGCGGGA 669 consensus_1429#1 TACCTCCAAGCAGCAGCAGCAGTAC--------------------------- 651 * * * **** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||