cluster # 144

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Anopheles gambiae
cluster # 144 cluster # 144 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_144#0 length = 273 sequences # 1

consensus_144#1 length = 220 sequences # 1

consensusID : consensus_144#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 273
fasta sequence

                              [CCGGACAGAACACGAAAAACGAAATAAGAGAAACTTCTGCCCTCCTTTTCTTCCCCCCTCCCATTGGACGTGTGTTTGTTCGTTTGTGGATGATGATGATTTAACAAAAAAATAGATAAGAAGAAAAACACCAGGAAAAAGAAATCGGGACTGTTCCGGGCAGGGGAAGGAAAGTCGAAGGACTGAAGTGTGGCAATGGACAACTAGTTTTTTCTTGAAAATCTTTTCTTCAAACTCCACACTACTGTGTTGGGCCTAATGTTGGTTTGGTGG]

[+] EMBL BM627637             [CCGGACAGAACACGAAAAACGAAATAAGAGAAACTTCTGCCCTCCTTTTCTTCCCCCCTCCCATTGGACGTGTGTTTGTTCGTTTGTGGATGATGATGATTTAACAAAAAAATAGATAAGAAGAAAAACACCAGGAAAAAGAAATCGGGACTGTTCCGGGCAGGGGAAGGAAAGTCGAAGGACTGAAGTGTGGCAATGGACAACTAGTTTTTTCTTGAAAATCTTTTCTTCAAACTCCACACTACTGTGTTGGGCCTAATGTTGGTTTGGTGG]




>consensus_144#0
CCGGACAGAACACGAAAAACGAAATAAGAGAAACTTCTGCCCTCCTTTTCTTCCCCCCTC
CCATTGGACGTGTGTTTGTTCGTTTGTGGATGATGATGATTTAACAAAAAAATAGATAAG
AAGAAAAACACCAGGAAAAAGAAATCGGGACTGTTCCGGGCAGGGGAAGGAAAGTCGAAG
GACTGAAGTGTGGCAATGGACAACTAGTTTTTTCTTGAAAATCTTTTCTTCAAACTCCAC
ACTACTGTGTTGGGCCTAATGTTGGTTTGGTGG

consensusID : consensus_144#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 220
fasta sequence

                              [CCGAAGAAATCGGATTGTTCTGGACAGAAGAAGGAAAGTCGACTAAGGACTGAAGTGTGGCAATGGACAAATAGTTTTTTCTTGAAAATCTTTTCTCAGTTCGCCTATTTGATTGAACTATAAATCCTCCAACGGTAAGAACACTCGCAGAAGAAGAAAAAAGACCCCCAAAAAATGTCGAAAGATGGGGGAATCCTTTCAGTAAAGTTCATCCGTGTTT]

[+] EMBL BM636772             [CCGAAGAAATCGGATTGTTCTGGACAGAAGAAGGAAAGTCGACTAAGGACTGAAGTGTGGCAATGGACAAATAGTTTTTTCTTGAAAATCTTTTCTCAGTTCGCCTATTTGATTGAACTATAAATCCTCCAACGGTAAGAACACTCGCAGAAGAAGAAAAAAGACCCCCAAAAAATGTCGAAAGATGGGGGAATCCTTTCAGTAAAGTTCATCCGTGTTT]




>consensus_144#1
CCGAAGAAATCGGATTGTTCTGGACAGAAGAAGGAAAGTCGACTAAGGACTGAAGTGTGG
CAATGGACAAATAGTTTTTTCTTGAAAATCTTTTCTCAGTTCGCCTATTTGATTGAACTA
TAAATCCTCCAACGGTAAGAACACTCGCAGAAGAAGAAAAAAGACCCCCAAAAAATGTCG
AAAGATGGGGGAATCCTTTCAGTAAAGTTCATCCGTGTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_144#0      -------------------CCGGACAGAACACGAAAAACGAAATAAGAG--AAACTTCTG 39
consensus_144#1      CCGAAGAAATCGGATTGTTCTGGACAGAAGAAGGAAAGTCGACTAAGGACTGAAGTGTGG 60
                                        * ******** * * ***    * ****     ** *   *

consensus_144#0      CCCTCCTTTTCTTCCCCCCTCCCATTGGACGTGTGTTTGTTCGTTTGTGGATGATGATGA 99
consensus_144#1      CAATGGACAAATAGTTTTTTCTTGAAAATCTTTTCTCAGTTCGCCTATT--------TGA 112
                     *  *       *       **        * * * *  *****  * *         ***

consensus_144#0      TTTAACAAAAAAATAGATAAGAAGAAAAACACCAGGAAAAAGAAATCGGGACTGTTCCGG 159
consensus_144#1      TTGAACTATAAATCCTCCAACGGTAAGAACACTCGCAGAAGAAGA--AAAAAGACCCCCA 170
                     ** *** * ***      **    ** *****  * * **  * *     *     **  

consensus_144#0      GCAGGGGAAGGAAAGTCGAAGGACTGAAGTGTGGCAATGGACAACTAGTTTTTTCTTGAA 219
consensus_144#1      AAAAATGTCGAAAGATGGGGGAATCC--TTTCAGTAAAGTTCATCCGTGTTT-------- 220
                       *   *  * **  * *  * *      *   * ** *  ** *    ***        

consensus_144#0      AATCTTTTCTTCAAACTCCACACTACTGTGTTGGGCCTAATGTTGGTTTGGTGG 273
consensus_144#1      ------------------------------------------------------