Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1444 cluster # 1444       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1444#0 length = 1229 sequences # 1  
consensus_1444#1 length = 1057 sequences # 1  

consensusID : consensus_1444#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1229
fasta sequence
                              [AAAATCCCCCNCAGTTTTAATTAAGAACACATTTAATTTCACCGTACCTTGTGTATCCAGGGTTTCATTCACATAATCAACATTCATTCATACATAATTTTCCTCGCAATTTTCAACAGCATTTCAATTCATATCATACACACAGTTCATTGTGGCACATCAACTCATTTTCACACATCATGTCACATTCACAAATGCAACATGTTAATCCGCTATTTCACACACATCATCATCCTAAGTTTCTATCTCAAGCAACATGCACATTTCACATTTCAGCCTTCATTCTATTCTTCATTCAACGTCTCACATNCTCTCCACATCNCACNATNCAATTTCAAACATCACCAGGTCACATAATANTCNCAGGGCATTGCAGCCCTTTTCACACACATCAACACCACCATCNCCATCATACTTACTTCCAATCCACAATTNATNCTCCCACNCATTCNNNCACACTNNATTCANAGGCCCTCTCACNCNACACANATNCAGGCCCTCATTCTAATTTTCAACATTCACAACAATTATCTGGGTNTCCAATTACACACTTCNTCCATTANCTCAATCCATTACAANCCACCCAATTCATCATNTCCCACAANTTCNCCCCCCACTTTCCCACCCATCTCCANTCTCTCTCAATTATACNNACATACTCCNCANACACTTACTCGTCACAATTACAACATTAACGAACAAAANTATCTTCACGNTTAAAAGTTCACNTTGGANTTCACAACCACAACTCTANCGGCTAACTTAACTTACAACACTNATCTCAACTTACATCTCNNCNAACACGGNTTAACTCTTTCANACTTCTCTCGGACTTAAAGGGGGCTCTTCTGNCACACGTCGGAACACGGGAAACCCTCTTCCGAGCCACACACTTNTAANACACTACTTAACTTTTCCACCCCTGGGTAGTATAACAGCNAAAGAAAACACCCAATTGTTCATTCTTCAGCAGGGCACATTGTTTAAACTTTATTATACAACAGGATCATAAGGCCCCTTGGTCCCCCCACGTGGCCAGATTTTTTTTCAACACAAGCGGGACCCCGAGCGAGGGCANACATTTTATAGGAACCCCGGCTTGCCGACACGGCTAACCATTACAGTCCAACTCAAGGTNCCCTTTTCTACTAACTTCTAGANCAGCGGCGTGGAGCTACTATGAACTGGGGTTTGGACACATGGCACGAAATACTTANTAACCCTGGATA]

[+] EMBL AL692186             [AAAATCCCCCNCAGTTTTAATTAAGAACACATTTAATTTCACCGTACCTTGTGTATCCAGGGTTTCATTCACATAATCAACATTCATTCATACATAATTTTCCTCGCAATTTTCAACAGCATTTCAATTCATATCATACACACAGTTCATTGTGGCACATCAACTCATTTTCACACATCATGTCACATTCACAAATGCAACATGTTAATCCGCTATTTCACACACATCATCATCCTAAGTTTCTATCTCAAGCAACATGCACATTTCACATTTCAGCCTTCATTCTATTCTTCATTCAACGTCTCACATNCTCTCCACATCNCACNATNCAATTTCAAACATCACCAGGTCACATAATANTCNCAGGGCATTGCAGCCCTTTTCACACACATCAACACCACCATCNCCATCATACTTACTTCCAATCCACAATTNATNCTCCCACNCATTCNNNCACACTNNATTCANAGGCCCTCTCACNCNACACANATNCAGGCCCTCATTCTAATTTTCAACATTCACAACAATTATCTGGGTNTCCAATTACACACTTCNTCCATTANCTCAATCCATTACAANCCACCCAATTCATCATNTCCCACAANTTCNCCCCCCACTTTCCCACCCATCTCCANTCTCTCTCAATTATACNNACATACTCCNCANACACTTACTCGTCACAATTACAACATTAACGAACAAAANTATCTTCACGNTTAAAAGTTCACNTTGGANTTCACAACCACAACTCTANCGGCTAACTTAACTTACAACACTNATCTCAACTTACATCTCNNCNAACACGGNTTAACTCTTTCANACTTCTCTCGGACTTAAAGGGGGCTCTTCTGNCACACGTCGGAACACGGGAAACCCTCTTCCGAGCCACACACTTNTAANACACTACTTAACTTTTCCACCCCTGGGTAGTATAACAGCNAAAGAAAACACCCAATTGTTCATTCTTCAGCAGGGCACATTGTTTAAACTTTATTATACAACAGGATCATAAGGCCCCTTGGTCCCCCCACGTGGCCAGATTTTTTTTCAACACAAGCGGGACCCCGAGCGAGGGCANACATTTTATAGGAACCCCGGCTTGCCGACACGGCTAACCATTACAGTCCAACTCAAGGTNCCCTTTTCTACTAACTTCTAGANCAGCGGCGTGGAGCTACTATGAACTGGGGTTTGGACACATGGCACGAAATACTTANTAACCCTGGATA]


>consensus_1444#0 AAAATCCCCCNCAGTTTTAATTAAGAACACATTTAATTTCACCGTACCTTGTGTATCCAG GGTTTCATTCACATAATCAACATTCATTCATACATAATTTTCCTCGCAATTTTCAACAGC ATTTCAATTCATATCATACACACAGTTCATTGTGGCACATCAACTCATTTTCACACATCA TGTCACATTCACAAATGCAACATGTTAATCCGCTATTTCACACACATCATCATCCTAAGT TTCTATCTCAAGCAACATGCACATTTCACATTTCAGCCTTCATTCTATTCTTCATTCAAC GTCTCACATNCTCTCCACATCNCACNATNCAATTTCAAACATCACCAGGTCACATAATAN TCNCAGGGCATTGCAGCCCTTTTCACACACATCAACACCACCATCNCCATCATACTTACT TCCAATCCACAATTNATNCTCCCACNCATTCNNNCACACTNNATTCANAGGCCCTCTCAC NCNACACANATNCAGGCCCTCATTCTAATTTTCAACATTCACAACAATTATCTGGGTNTC CAATTACACACTTCNTCCATTANCTCAATCCATTACAANCCACCCAATTCATCATNTCCC ACAANTTCNCCCCCCACTTTCCCACCCATCTCCANTCTCTCTCAATTATACNNACATACT CCNCANACACTTACTCGTCACAATTACAACATTAACGAACAAAANTATCTTCACGNTTAA AAGTTCACNTTGGANTTCACAACCACAACTCTANCGGCTAACTTAACTTACAACACTNAT CTCAACTTACATCTCNNCNAACACGGNTTAACTCTTTCANACTTCTCTCGGACTTAAAGG GGGCTCTTCTGNCACACGTCGGAACACGGGAAACCCTCTTCCGAGCCACACACTTNTAAN ACACTACTTAACTTTTCCACCCCTGGGTAGTATAACAGCNAAAGAAAACACCCAATTGTT CATTCTTCAGCAGGGCACATTGTTTAAACTTTATTATACAACAGGATCATAAGGCCCCTT GGTCCCCCCACGTGGCCAGATTTTTTTTCAACACAAGCGGGACCCCGAGCGAGGGCANAC ATTTTATAGGAACCCCGGCTTGCCGACACGGCTAACCATTACAGTCCAACTCAAGGTNCC CTTTTCTACTAACTTCTAGANCAGCGGCGTGGAGCTACTATGAACTGGGGTTTGGACACA TGGCACGAAATACTTANTAACCCTGGATA



consensusID : consensus_1444#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1057
fasta sequence
                              [ACTGCCCCCGAGCTTTCAAANTAATTGCAACNCAATTTCCATTTTCAGCCAANATTTAATTTCATGTACCTGTGTATCCAGGGTTTCATTAACATAATCAAATTCATTCATCACATCAATTTTTCCTCCGCACATTTTCAACAGCATTTCANATTTCATATCATACACACAGTTATTGTGGCACATCAACTCATTTTCAACATCATGGTCACATCTCAGCACACATGCACACCATGGTTTCACATCCGGTTTTATCAACACATCATCATCCTCAGTTTTATTCACACAAAATGCAATTTCACATATTCAGCTTCATTTCATTTATTCATTCAAGGTATCACATTTTTTCAAATTCTCACAATCACACTTCCACACATCACACAGTCCACAATCCATTTNTATCACAGGGCATTGCAGCCCTCTCTCCNCACCACAATCAAANCACATATTTCAATCATNTTTNTTNTATCAATCACAATCTCTCTCATCCACCACAATCCACACCATTCATNACAAGCCCTTTCACACCACACATTCAAGCCTCAATTTTCATTTTCCAACAATTCACAACATCTCTGGTTCAATTCCACACATACTTCCAATACTTTCTNCTCTCAATNCACACACACACACAATATCNATCTTTCCACCACTTCNCCACACCAATTCTTCACNCCAATTTTAATTCTTCTCCAATTTTCAACACAACAATCCTCNCACACCACTCTCTTTCCCACNACTCCACCACTCTCACAACACANCCATTTTCATCCAAGATTCCACACTTCNTCCAATTCGTCCATTCACACANCCATTCTCTCAAGCGTTCCAATCTCCAATTTACAACACACATCTTNTTCCAATTCCATCCACAACCAAGCGTTTCAACAATTCTACACNAATTATTCNTCGGCAATACAAAGGAGTGTACTCTACTCACAACAGTTCGGGCCACCAGGCCACGATTCTTCCCCGGCGAGCCCCACAACAAATTCTTCAACAACAATTTCAATTCCATTTTCCCAACCCCCCTGTGGAGTNTTATTAAAAAACCCCA]

[+] EMBL AL930888             [ACTGCCCCCGAGCTTTCAAANTAATTGCAACNCAATTTCCATTTTCAGCCAANATTTAATTTCATGTACCTGTGTATCCAGGGTTTCATTAACATAATCAAATTCATTCATCACATCAATTTTTCCTCCGCACATTTTCAACAGCATTTCANATTTCATATCATACACACAGTTATTGTGGCACATCAACTCATTTTCAACATCATGGTCACATCTCAGCACACATGCACACCATGGTTTCACATCCGGTTTTATCAACACATCATCATCCTCAGTTTTATTCACACAAAATGCAATTTCACATATTCAGCTTCATTTCATTTATTCATTCAAGGTATCACATTTTTTCAAATTCTCACAATCACACTTCCACACATCACACAGTCCACAATCCATTTNTATCACAGGGCATTGCAGCCCTCTCTCCNCACCACAATCAAANCACATATTTCAATCATNTTTNTTNTATCAATCACAATCTCTCTCATCCACCACAATCCACACCATTCATNACAAGCCCTTTCACACCACACATTCAAGCCTCAATTTTCATTTTCCAACAATTCACAACATCTCTGGTTCAATTCCACACATACTTCCAATACTTTCTNCTCTCAATNCACACACACACACAATATCNATCTTTCCACCACTTCNCCACACCAATTCTTCACNCCAATTTTAATTCTTCTCCAATTTTCAACACAACAATCCTCNCACACCACTCTCTTTCCCACNACTCCACCACTCTCACAACACANCCATTTTCATCCAAGATTCCACACTTCNTCCAATTCGTCCATTCACACANCCATTCTCTCAAGCGTTCCAATCTCCAATTTACAACACACATCTTNTTCCAATTCCATCCACAACCAAGCGTTTCAACAATTCTACACNAATTATTCNTCGGCAATACAAAGGAGTGTACTCTACTCACAACAGTTCGGGCCACCAGGCCACGATTCTTCCCCGGCGAGCCCCACAACAAATTCTTCAACAACAATTTCAATTCCATTTTCCCAACCCCCCTGTGGAGTNTTATTAAAAAACCCCA]


>consensus_1444#1 ACTGCCCCCGAGCTTTCAAANTAATTGCAACNCAATTTCCATTTTCAGCCAANATTTAAT TTCATGTACCTGTGTATCCAGGGTTTCATTAACATAATCAAATTCATTCATCACATCAAT TTTTCCTCCGCACATTTTCAACAGCATTTCANATTTCATATCATACACACAGTTATTGTG GCACATCAACTCATTTTCAACATCATGGTCACATCTCAGCACACATGCACACCATGGTTT CACATCCGGTTTTATCAACACATCATCATCCTCAGTTTTATTCACACAAAATGCAATTTC ACATATTCAGCTTCATTTCATTTATTCATTCAAGGTATCACATTTTTTCAAATTCTCACA ATCACACTTCCACACATCACACAGTCCACAATCCATTTNTATCACAGGGCATTGCAGCCC TCTCTCCNCACCACAATCAAANCACATATTTCAATCATNTTTNTTNTATCAATCACAATC TCTCTCATCCACCACAATCCACACCATTCATNACAAGCCCTTTCACACCACACATTCAAG CCTCAATTTTCATTTTCCAACAATTCACAACATCTCTGGTTCAATTCCACACATACTTCC AATACTTTCTNCTCTCAATNCACACACACACACAATATCNATCTTTCCACCACTTCNCCA CACCAATTCTTCACNCCAATTTTAATTCTTCTCCAATTTTCAACACAACAATCCTCNCAC ACCACTCTCTTTCCCACNACTCCACCACTCTCACAACACANCCATTTTCATCCAAGATTC CACACTTCNTCCAATTCGTCCATTCACACANCCATTCTCTCAAGCGTTCCAATCTCCAAT TTACAACACACATCTTNTTCCAATTCCATCCACAACCAAGCGTTTCAACAATTCTACACN AATTATTCNTCGGCAATACAAAGGAGTGTACTCTACTCACAACAGTTCGGGCCACCAGGC CACGATTCTTCCCCGGCGAGCCCCACAACAAATTCTTCAACAACAATTTCAATTCCATTT TCCCAACCCCCCTGTGGAGTNTTATTAAAAAACCCCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1444#0      ---------------------AAAATCCCCCNCAGTTTTAATTAAGAAC--ACATTTAAT 37
consensus_1444#1      ACTGCCCCCGAGCTTTCAAANTAATTGCAACNCAATTTCCATTTTCAGCCAANATTTAAT 60
                                            ** * *  **** ***  ***   * *  * *******

consensus_1444#0      TTCACCGTACCTTGTGTATCCAGGGTTTCATTCACATAATCAACATTCATTCAT-ACATA 96
consensus_1444#1      TTCAT-GTACCT-GTGTATCCAGGGTTTCATTAACATAATCAA-ATTCATTCATCACATC 117
                      ****  ****** ******************* ********** ********** **** 

consensus_1444#0      A---TTTTCCTCGCA-ATTTTCAACAGCATTTCAA--TTCATATCATACACACAGTTCAT 150
consensus_1444#1      AATTTTTCCTCCGCACATTTTCAACAGCATTTCANATTTCATATCATACACACAGTT-AT 176
                      *   *** *  **** ******************   ******************** **

consensus_1444#0      TGTGGCACATCAACTCATTTTCACACATCATG-TCACATT------CACAAATGCAACAT 203
consensus_1444#1      TGTGGCACATCAACTCATTTTCA-ACATCATGGTCACATCTCAGCACACATGCACACCAT 235
                      *********************** ******** ******       ****    ** ***

consensus_1444#0      GTTA----ATCCGCTATTTCACACACATCATCATCCTAAGTTTCTATCTCAAGCAACATG 259
consensus_1444#1      GGTTTCACATCCGGTTTTATCAACACATCATCATCCTCAGTTT-TAT-TCACACAAAATG 293
                      * *     ***** * **    *************** ***** *** ***  *** ***

consensus_1444#0      CACATTTCACATTTCAGCCTTCATTCTATTC-TTCATTCAACGTCTCACATNCTCTCCAC 318
consensus_1444#1      CA-ATTTCACATATTCAGCTTCATTTCATTTATTCATTCAAGGTATCACATTTTTTCAAA 352
                      ** ********* *    *******  ***  ********* ** ******  * ** * 

consensus_1444#0      ATCNCACNATN-CAATTTCAAACATCAC-CAGGTCACA-----TAATANTCNCAGGGCAT 371
consensus_1444#1      TTCTCACAATCACACTTCCACACATCACACAGTCCACAATCCATTTNTATCACAGGGCAT 412
                       ** *** **  ** ** ** ******* ***  ****     *     ** ********

consensus_1444#0      TGCAGCCCTTTTCACACAC----ATCAACACCACCATCNCCATCATACTTACTTCCAATC 427
consensus_1444#1      TGCAGCCCTCTCTCCNCACCACAATCAAANCACATATTTCAATCATNTTTNTTNT--ATC 470
                      ********* *   * ***    *****  *    **  * *****  **  *    ***

consensus_1444#0      CACAATTNATNCTCCCACNCATTCNNNCACACTNNATTCANAG---GCCCTCTCACNCNA 484
consensus_1444#1      AATCACAATCTCTCTCATCCACCACAATCCACACCATTCATNACAAGCCCTTTCACACCA 530
                       *  *      *** **  **        ***   *****      ***** **** * *

consensus_1444#0      CACANATNCAGGCCCTCATTCTAATTTTC-AACA-TTCACAACAATTATCTGGGTNTCCA 542
consensus_1444#1      CACA--TTCAAGCCTCAATTTTCATTTTCCAACAATTCACAACATCTCTGGTTCAATTCC 588
                      ****  * ** ***   *** * ****** **** *********  * *       * * 

consensus_1444#0      ATTACACACTTCNTCCATTANCTCAATCCATTACAANC---CACCCAATTCATCATNTCC 599
consensus_1444#1      AC-ACATACTTCCAATACTTTCTNCTCTCAATNCACACACACACACAATATCNATCTTTC 647
                      *  *** *****    * *  **     ** * **  *   *** ****        * *

consensus_1444#0      CACAANTTCNCCCC-CCACTTTCCCACCC--ATCTCCANTCTCTCTCAATTATACNNACA 656
consensus_1444#1      CACCACTTCNCCACACCAATTCTTCACNCCAATTTTAATTCTTCTCCAATTTTCAACACA 707
                      *** * ****** * *** **   *** *  ** *  * ***    ***** *    ***

consensus_1444#0      -TACTCCNCANACACT----TACTCGTCACAATTACAACATTAACG-AACAAAANTATCT 710
consensus_1444#1      ACAATCCTCNCACACCACTCTCTTTCCCACNACTCCACCACTCTCACAACACANCCATTT 767
                        * *** *  ****     *  *   *** * * ** ** *  *  **** *   ** *

consensus_1444#0      TCACGNTTAAAAGTTCACNTTGGANTTCACAACCACAACTCTANCGGCTAACTTAACTTA 770
consensus_1444#1      TCA--TCCAAGATTCCACACTTCNTC-CAATTCGTCCATTCACACANCCATTCTCTCAAG 824
                      ***     ** * * ***  *      **   *  * * **   *  * *   *  *   

consensus_1444#0      CAACACTNATCTCAACTTACATCTCNNCNAACACGGNTTAACTCTTTCANACTTCTCTCG 830
consensus_1444#1      CGTTCCAATCTCCAATTTACAAC--ACACATCTTNTTCCAATTCCATC-CACAACCAAGC 881
                      *    *      *** ***** *      * *       ** **  **  **  *     

consensus_1444#0      GACTTAAAGGGGGCTCTTCTGNCACACGTCGG-AACACGGGAAACCCTCTTCCGAGCCAC 889
consensus_1444#1      GTTTCAACAATTCTACACNAATTATTCNTCGGCAATACAAAGGAGTGTACTCT-ACTCAC 940
                      *  * **        *       *  * **** ** **     *   *  **  *  ***

consensus_1444#0      ACACTTNTAANACACTACTTAACTTTTCCACCCCTGGGTAGTATAACAGCNAAAGAAAAC 949
consensus_1444#1      AACAGTTCGGGCCACCAGGCCACGATTCTTCCCCGGCG------AGCCCCACAACAAATT 994
                      *    *      *** *    **  ***  **** * *      * *  *  ** ***  

consensus_1444#0      ACCCAATTGTTCATTCTTCAGCAGGGCACATTGTTTAAACTTTATTATACAACAGGATCA 1009
consensus_1444#1      CTTCAACAA--CAAT-TTCAAT----TCCATTTTCCCAACCCCCCTGTGGAGTNTTATTA 1047
                         ***     ** * ****        **** *   ***     * *  *     ** *

consensus_1444#0      TAAGGCCCCTTGGTCCCCCCACGTGGCCAGATTTTTTTTCAACACAAGCGGGACCCCGAG 1069
consensus_1444#1      AAAAACCCCA-------------------------------------------------- 1057
                       **  ****                                                   

consensus_1444#0      CGAGGGCANACATTTTATAGGAACCCCGGCTTGCCGACACGGCTAACCATTACAGTCCAA 1129
consensus_1444#1      ------------------------------------------------------------
                                                                                  

consensus_1444#0      CTCAAGGTNCCCTTTTCTACTAACTTCTAGANCAGCGGCGTGGAGCTACTATGAACTGGG 1189
consensus_1444#1      ------------------------------------------------------------
                                                                                  

consensus_1444#0      GTTTGGACACATGGCACGAAATACTTANTAACCCTGGATA 1229
consensus_1444#1      ----------------------------------------
                                                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)