These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1444#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1229 fasta sequence [AAAATCCCCCNCAGTTTTAATTAAGAACACATTTAATTTCACCGTACCTTGTGTATCCAGGGTTTCATTCACATAATCAACATTCATTCATACATAATTTTCCTCGCAATTTTCAACAGCATTTCAATTCATATCATACACACAGTTCATTGTGGCACATCAACTCATTTTCACACATCATGTCACATTCACAAATGCAACATGTTAATCCGCTATTTCACACACATCATCATCCTAAGTTTCTATCTCAAGCAACATGCACATTTCACATTTCAGCCTTCATTCTATTCTTCATTCAACGTCTCACATNCTCTCCACATCNCACNATNCAATTTCAAACATCACCAGGTCACATAATANTCNCAGGGCATTGCAGCCCTTTTCACACACATCAACACCACCATCNCCATCATACTTACTTCCAATCCACAATTNATNCTCCCACNCATTCNNNCACACTNNATTCANAGGCCCTCTCACNCNACACANATNCAGGCCCTCATTCTAATTTTCAACATTCACAACAATTATCTGGGTNTCCAATTACACACTTCNTCCATTANCTCAATCCATTACAANCCACCCAATTCATCATNTCCCACAANTTCNCCCCCCACTTTCCCACCCATCTCCANTCTCTCTCAATTATACNNACATACTCCNCANACACTTACTCGTCACAATTACAACATTAACGAACAAAANTATCTTCACGNTTAAAAGTTCACNTTGGANTTCACAACCACAACTCTANCGGCTAACTTAACTTACAACACTNATCTCAACTTACATCTCNNCNAACACGGNTTAACTCTTTCANACTTCTCTCGGACTTAAAGGGGGCTCTTCTGNCACACGTCGGAACACGGGAAACCCTCTTCCGAGCCACACACTTNTAANACACTACTTAACTTTTCCACCCCTGGGTAGTATAACAGCNAAAGAAAACACCCAATTGTTCATTCTTCAGCAGGGCACATTGTTTAAACTTTATTATACAACAGGATCATAAGGCCCCTTGGTCCCCCCACGTGGCCAGATTTTTTTTCAACACAAGCGGGACCCCGAGCGAGGGCANACATTTTATAGGAACCCCGGCTTGCCGACACGGCTAACCATTACAGTCCAACTCAAGGTNCCCTTTTCTACTAACTTCTAGANCAGCGGCGTGGAGCTACTATGAACTGGGGTTTGGACACATGGCACGAAATACTTANTAACCCTGGATA] [+] EMBL AL692186 [AAAATCCCCCNCAGTTTTAATTAAGAACACATTTAATTTCACCGTACCTTGTGTATCCAGGGTTTCATTCACATAATCAACATTCATTCATACATAATTTTCCTCGCAATTTTCAACAGCATTTCAATTCATATCATACACACAGTTCATTGTGGCACATCAACTCATTTTCACACATCATGTCACATTCACAAATGCAACATGTTAATCCGCTATTTCACACACATCATCATCCTAAGTTTCTATCTCAAGCAACATGCACATTTCACATTTCAGCCTTCATTCTATTCTTCATTCAACGTCTCACATNCTCTCCACATCNCACNATNCAATTTCAAACATCACCAGGTCACATAATANTCNCAGGGCATTGCAGCCCTTTTCACACACATCAACACCACCATCNCCATCATACTTACTTCCAATCCACAATTNATNCTCCCACNCATTCNNNCACACTNNATTCANAGGCCCTCTCACNCNACACANATNCAGGCCCTCATTCTAATTTTCAACATTCACAACAATTATCTGGGTNTCCAATTACACACTTCNTCCATTANCTCAATCCATTACAANCCACCCAATTCATCATNTCCCACAANTTCNCCCCCCACTTTCCCACCCATCTCCANTCTCTCTCAATTATACNNACATACTCCNCANACACTTACTCGTCACAATTACAACATTAACGAACAAAANTATCTTCACGNTTAAAAGTTCACNTTGGANTTCACAACCACAACTCTANCGGCTAACTTAACTTACAACACTNATCTCAACTTACATCTCNNCNAACACGGNTTAACTCTTTCANACTTCTCTCGGACTTAAAGGGGGCTCTTCTGNCACACGTCGGAACACGGGAAACCCTCTTCCGAGCCACACACTTNTAANACACTACTTAACTTTTCCACCCCTGGGTAGTATAACAGCNAAAGAAAACACCCAATTGTTCATTCTTCAGCAGGGCACATTGTTTAAACTTTATTATACAACAGGATCATAAGGCCCCTTGGTCCCCCCACGTGGCCAGATTTTTTTTCAACACAAGCGGGACCCCGAGCGAGGGCANACATTTTATAGGAACCCCGGCTTGCCGACACGGCTAACCATTACAGTCCAACTCAAGGTNCCCTTTTCTACTAACTTCTAGANCAGCGGCGTGGAGCTACTATGAACTGGGGTTTGGACACATGGCACGAAATACTTANTAACCCTGGATA] consensusID : consensus_1444#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1057 fasta sequence [ACTGCCCCCGAGCTTTCAAANTAATTGCAACNCAATTTCCATTTTCAGCCAANATTTAATTTCATGTACCTGTGTATCCAGGGTTTCATTAACATAATCAAATTCATTCATCACATCAATTTTTCCTCCGCACATTTTCAACAGCATTTCANATTTCATATCATACACACAGTTATTGTGGCACATCAACTCATTTTCAACATCATGGTCACATCTCAGCACACATGCACACCATGGTTTCACATCCGGTTTTATCAACACATCATCATCCTCAGTTTTATTCACACAAAATGCAATTTCACATATTCAGCTTCATTTCATTTATTCATTCAAGGTATCACATTTTTTCAAATTCTCACAATCACACTTCCACACATCACACAGTCCACAATCCATTTNTATCACAGGGCATTGCAGCCCTCTCTCCNCACCACAATCAAANCACATATTTCAATCATNTTTNTTNTATCAATCACAATCTCTCTCATCCACCACAATCCACACCATTCATNACAAGCCCTTTCACACCACACATTCAAGCCTCAATTTTCATTTTCCAACAATTCACAACATCTCTGGTTCAATTCCACACATACTTCCAATACTTTCTNCTCTCAATNCACACACACACACAATATCNATCTTTCCACCACTTCNCCACACCAATTCTTCACNCCAATTTTAATTCTTCTCCAATTTTCAACACAACAATCCTCNCACACCACTCTCTTTCCCACNACTCCACCACTCTCACAACACANCCATTTTCATCCAAGATTCCACACTTCNTCCAATTCGTCCATTCACACANCCATTCTCTCAAGCGTTCCAATCTCCAATTTACAACACACATCTTNTTCCAATTCCATCCACAACCAAGCGTTTCAACAATTCTACACNAATTATTCNTCGGCAATACAAAGGAGTGTACTCTACTCACAACAGTTCGGGCCACCAGGCCACGATTCTTCCCCGGCGAGCCCCACAACAAATTCTTCAACAACAATTTCAATTCCATTTTCCCAACCCCCCTGTGGAGTNTTATTAAAAAACCCCA] [+] EMBL AL930888 [ACTGCCCCCGAGCTTTCAAANTAATTGCAACNCAATTTCCATTTTCAGCCAANATTTAATTTCATGTACCTGTGTATCCAGGGTTTCATTAACATAATCAAATTCATTCATCACATCAATTTTTCCTCCGCACATTTTCAACAGCATTTCANATTTCATATCATACACACAGTTATTGTGGCACATCAACTCATTTTCAACATCATGGTCACATCTCAGCACACATGCACACCATGGTTTCACATCCGGTTTTATCAACACATCATCATCCTCAGTTTTATTCACACAAAATGCAATTTCACATATTCAGCTTCATTTCATTTATTCATTCAAGGTATCACATTTTTTCAAATTCTCACAATCACACTTCCACACATCACACAGTCCACAATCCATTTNTATCACAGGGCATTGCAGCCCTCTCTCCNCACCACAATCAAANCACATATTTCAATCATNTTTNTTNTATCAATCACAATCTCTCTCATCCACCACAATCCACACCATTCATNACAAGCCCTTTCACACCACACATTCAAGCCTCAATTTTCATTTTCCAACAATTCACAACATCTCTGGTTCAATTCCACACATACTTCCAATACTTTCTNCTCTCAATNCACACACACACACAATATCNATCTTTCCACCACTTCNCCACACCAATTCTTCACNCCAATTTTAATTCTTCTCCAATTTTCAACACAACAATCCTCNCACACCACTCTCTTTCCCACNACTCCACCACTCTCACAACACANCCATTTTCATCCAAGATTCCACACTTCNTCCAATTCGTCCATTCACACANCCATTCTCTCAAGCGTTCCAATCTCCAATTTACAACACACATCTTNTTCCAATTCCATCCACAACCAAGCGTTTCAACAATTCTACACNAATTATTCNTCGGCAATACAAAGGAGTGTACTCTACTCACAACAGTTCGGGCCACCAGGCCACGATTCTTCCCCGGCGAGCCCCACAACAAATTCTTCAACAACAATTTCAATTCCATTTTCCCAACCCCCCTGTGGAGTNTTATTAAAAAACCCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1444#0 ---------------------AAAATCCCCCNCAGTTTTAATTAAGAAC--ACATTTAAT 37 consensus_1444#1 ACTGCCCCCGAGCTTTCAAANTAATTGCAACNCAATTTCCATTTTCAGCCAANATTTAAT 60 ** * * **** *** *** * * * ******* consensus_1444#0 TTCACCGTACCTTGTGTATCCAGGGTTTCATTCACATAATCAACATTCATTCAT-ACATA 96 consensus_1444#1 TTCAT-GTACCT-GTGTATCCAGGGTTTCATTAACATAATCAA-ATTCATTCATCACATC 117 **** ****** ******************* ********** ********** **** consensus_1444#0 A---TTTTCCTCGCA-ATTTTCAACAGCATTTCAA--TTCATATCATACACACAGTTCAT 150 consensus_1444#1 AATTTTTCCTCCGCACATTTTCAACAGCATTTCANATTTCATATCATACACACAGTT-AT 176 * *** * **** ****************** ******************** ** consensus_1444#0 TGTGGCACATCAACTCATTTTCACACATCATG-TCACATT------CACAAATGCAACAT 203 consensus_1444#1 TGTGGCACATCAACTCATTTTCA-ACATCATGGTCACATCTCAGCACACATGCACACCAT 235 *********************** ******** ****** **** ** *** consensus_1444#0 GTTA----ATCCGCTATTTCACACACATCATCATCCTAAGTTTCTATCTCAAGCAACATG 259 consensus_1444#1 GGTTTCACATCCGGTTTTATCAACACATCATCATCCTCAGTTT-TAT-TCACACAAAATG 293 * * ***** * ** *************** ***** *** *** *** *** consensus_1444#0 CACATTTCACATTTCAGCCTTCATTCTATTC-TTCATTCAACGTCTCACATNCTCTCCAC 318 consensus_1444#1 CA-ATTTCACATATTCAGCTTCATTTCATTTATTCATTCAAGGTATCACATTTTTTCAAA 352 ** ********* * ******* *** ********* ** ****** * ** * consensus_1444#0 ATCNCACNATN-CAATTTCAAACATCAC-CAGGTCACA-----TAATANTCNCAGGGCAT 371 consensus_1444#1 TTCTCACAATCACACTTCCACACATCACACAGTCCACAATCCATTTNTATCACAGGGCAT 412 ** *** ** ** ** ** ******* *** **** * ** ******** consensus_1444#0 TGCAGCCCTTTTCACACAC----ATCAACACCACCATCNCCATCATACTTACTTCCAATC 427 consensus_1444#1 TGCAGCCCTCTCTCCNCACCACAATCAAANCACATATTTCAATCATNTTTNTTNT--ATC 470 ********* * * *** ***** * ** * ***** ** * *** consensus_1444#0 CACAATTNATNCTCCCACNCATTCNNNCACACTNNATTCANAG---GCCCTCTCACNCNA 484 consensus_1444#1 AATCACAATCTCTCTCATCCACCACAATCCACACCATTCATNACAAGCCCTTTCACACCA 530 * * *** ** ** *** ***** ***** **** * * consensus_1444#0 CACANATNCAGGCCCTCATTCTAATTTTC-AACA-TTCACAACAATTATCTGGGTNTCCA 542 consensus_1444#1 CACA--TTCAAGCCTCAATTTTCATTTTCCAACAATTCACAACATCTCTGGTTCAATTCC 588 **** * ** *** *** * ****** **** ********* * * * * consensus_1444#0 ATTACACACTTCNTCCATTANCTCAATCCATTACAANC---CACCCAATTCATCATNTCC 599 consensus_1444#1 AC-ACATACTTCCAATACTTTCTNCTCTCAATNCACACACACACACAATATCNATCTTTC 647 * *** ***** * * ** ** * ** * *** **** * * consensus_1444#0 CACAANTTCNCCCC-CCACTTTCCCACCC--ATCTCCANTCTCTCTCAATTATACNNACA 656 consensus_1444#1 CACCACTTCNCCACACCAATTCTTCACNCCAATTTTAATTCTTCTCCAATTTTCAACACA 707 *** * ****** * *** ** *** * ** * * *** ***** * *** consensus_1444#0 -TACTCCNCANACACT----TACTCGTCACAATTACAACATTAACG-AACAAAANTATCT 710 consensus_1444#1 ACAATCCTCNCACACCACTCTCTTTCCCACNACTCCACCACTCTCACAACACANCCATTT 767 * *** * **** * * *** * * ** ** * * **** * ** * consensus_1444#0 TCACGNTTAAAAGTTCACNTTGGANTTCACAACCACAACTCTANCGGCTAACTTAACTTA 770 consensus_1444#1 TCA--TCCAAGATTCCACACTTCNTC-CAATTCGTCCATTCACACANCCATTCTCTCAAG 824 *** ** * * *** * ** * * * ** * * * * * consensus_1444#0 CAACACTNATCTCAACTTACATCTCNNCNAACACGGNTTAACTCTTTCANACTTCTCTCG 830 consensus_1444#1 CGTTCCAATCTCCAATTTACAAC--ACACATCTTNTTCCAATTCCATC-CACAACCAAGC 881 * * *** ***** * * * ** ** ** ** * consensus_1444#0 GACTTAAAGGGGGCTCTTCTGNCACACGTCGG-AACACGGGAAACCCTCTTCCGAGCCAC 889 consensus_1444#1 GTTTCAACAATTCTACACNAATTATTCNTCGGCAATACAAAGGAGTGTACTCT-ACTCAC 940 * * ** * * * **** ** ** * * ** * *** consensus_1444#0 ACACTTNTAANACACTACTTAACTTTTCCACCCCTGGGTAGTATAACAGCNAAAGAAAAC 949 consensus_1444#1 AACAGTTCGGGCCACCAGGCCACGATTCTTCCCCGGCG------AGCCCCACAACAAATT 994 * * *** * ** *** **** * * * * * ** *** consensus_1444#0 ACCCAATTGTTCATTCTTCAGCAGGGCACATTGTTTAAACTTTATTATACAACAGGATCA 1009 consensus_1444#1 CTTCAACAA--CAAT-TTCAAT----TCCATTTTCCCAACCCCCCTGTGGAGTNTTATTA 1047 *** ** * **** **** * *** * * * ** * consensus_1444#0 TAAGGCCCCTTGGTCCCCCCACGTGGCCAGATTTTTTTTCAACACAAGCGGGACCCCGAG 1069 consensus_1444#1 AAAAACCCCA-------------------------------------------------- 1057 ** **** consensus_1444#0 CGAGGGCANACATTTTATAGGAACCCCGGCTTGCCGACACGGCTAACCATTACAGTCCAA 1129 consensus_1444#1 ------------------------------------------------------------ consensus_1444#0 CTCAAGGTNCCCTTTTCTACTAACTTCTAGANCAGCGGCGTGGAGCTACTATGAACTGGG 1189 consensus_1444#1 ------------------------------------------------------------ consensus_1444#0 GTTTGGACACATGGCACGAAATACTTANTAACCCTGGATA 1229 consensus_1444#1 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||