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Anopheles gambiae
cluster # 1446 cluster # 1446       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1446#0 length = 1090 sequences # 1  
consensus_1446#1 length = 700 sequences # 1  

consensusID : consensus_1446#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1090
fasta sequence
                              [GCAGAATCCCCCGAGTTATTTCTCGGTCGCTCAGCGTACAGCTATNGAACGGTNATCTGGCGCATCTACTCCGAGCCGATGTACTGGATAGAATGCGGTGCGCAATCTGGTGTGGCTGCGGAACCACCTCGTGGCGCCACTGTACGGAGGAATTCACCTTTCGTGCCTGCTATGTTGCCCCTGACTGCTGCAAACGTTATCGACCATCAATCGCAATGCTGATCACACCGNTATCTGTATCGGGCTGGACGCATACTGNAACATATTAAGGAGCGCCTGCAGAACAGGGGCGCCCACTGACGGGNAGGTGCTGATAACTATCGTTCTTCCAAAATATTCACTACANACAACCAATCTTATGGGCCATTCTTACCTCGGGCACCATCCTATTCCGGTGCAGGGTCCGCGAGACANTNTATATGGTACGNAANCCNGCTACACGGTNGTTGNNCATGCCNTATCCCTGGAAACCCCACTTCATTGNGGAATATACCCCGGCACNGCTCCCACANAACNGGCTCGCCAACTTCCGGCCACAACACCGGCCAAACCGGNTCAACAACACAGGTTNATTCACNGGCTACCCCAATCTATGGGGAATTCATCACAAACCGCTTGGCGNCCCCGCGACCATGGCAAANCNGANGCTTCGGACATNTCGATCCCCTTANCATGGGCNTCACNCACTNACACNCCACNACCGGCACCNAACGCCCTCGGNNTTACACCACCTNCAACCCAACATNACCGNAGCNCNNNGGCGACTTGGGCGNNAACNNACCTANAATTAACACACTTCTTATAACGGAGGACAACGCANNGACACCGGANACATGNGNCNGCCCCACATTTTGTCAGACTNAACTATTGACCCCATGGCGGTATGGGTACCCCCGCTATTTACAACNNGGTTAGCGGTACTAGGTCTGGTNCCCAAATAGACTACTCTNGCCANATTGANTNNAAANAAAAATAGCNTCNNACAAGTCCCGTATCCCCTCAGATGGTTGACCCAAACNGACNAGTTTNATCCCCTTAAACTTGNTATACACCCAAAAGATACAGCGACACNACAGTTGATCAACANTCA]

[+] EMBL AL692220             [GCAGAATCCCCCGAGTTATTTCTCGGTCGCTCAGCGTACAGCTATNGAACGGTNATCTGGCGCATCTACTCCGAGCCGATGTACTGGATAGAATGCGGTGCGCAATCTGGTGTGGCTGCGGAACCACCTCGTGGCGCCACTGTACGGAGGAATTCACCTTTCGTGCCTGCTATGTTGCCCCTGACTGCTGCAAACGTTATCGACCATCAATCGCAATGCTGATCACACCGNTATCTGTATCGGGCTGGACGCATACTGNAACATATTAAGGAGCGCCTGCAGAACAGGGGCGCCCACTGACGGGNAGGTGCTGATAACTATCGTTCTTCCAAAATATTCACTACANACAACCAATCTTATGGGCCATTCTTACCTCGGGCACCATCCTATTCCGGTGCAGGGTCCGCGAGACANTNTATATGGTACGNAANCCNGCTACACGGTNGTTGNNCATGCCNTATCCCTGGAAACCCCACTTCATTGNGGAATATACCCCGGCACNGCTCCCACANAACNGGCTCGCCAACTTCCGGCCACAACACCGGCCAAACCGGNTCAACAACACAGGTTNATTCACNGGCTACCCCAATCTATGGGGAATTCATCACAAACCGCTTGGCGNCCCCGCGACCATGGCAAANCNGANGCTTCGGACATNTCGATCCCCTTANCATGGGCNTCACNCACTNACACNCCACNACCGGCACCNAACGCCCTCGGNNTTACACCACCTNCAACCCAACATNACCGNAGCNCNNNGGCGACTTGGGCGNNAACNNACCTANAATTAACACACTTCTTATAACGGAGGACAACGCANNGACACCGGANACATGNGNCNGCCCCACATTTTGTCAGACTNAACTATTGACCCCATGGCGGTATGGGTACCCCCGCTATTTACAACNNGGTTAGCGGTACTAGGTCTGGTNCCCAAATAGACTACTCTNGCCANATTGANTNNAAANAAAAATAGCNTCNNACAAGTCCCGTATCCCCTCAGATGGTTGACCCAAACNGACNAGTTTNATCCCCTTAAACTTGNTATACACCCAAAAGATACAGCGACACNACAGTTGATCAACANTCA]


>consensus_1446#0 GCAGAATCCCCCGAGTTATTTCTCGGTCGCTCAGCGTACAGCTATNGAACGGTNATCTGG CGCATCTACTCCGAGCCGATGTACTGGATAGAATGCGGTGCGCAATCTGGTGTGGCTGCG GAACCACCTCGTGGCGCCACTGTACGGAGGAATTCACCTTTCGTGCCTGCTATGTTGCCC CTGACTGCTGCAAACGTTATCGACCATCAATCGCAATGCTGATCACACCGNTATCTGTAT CGGGCTGGACGCATACTGNAACATATTAAGGAGCGCCTGCAGAACAGGGGCGCCCACTGA CGGGNAGGTGCTGATAACTATCGTTCTTCCAAAATATTCACTACANACAACCAATCTTAT GGGCCATTCTTACCTCGGGCACCATCCTATTCCGGTGCAGGGTCCGCGAGACANTNTATA TGGTACGNAANCCNGCTACACGGTNGTTGNNCATGCCNTATCCCTGGAAACCCCACTTCA TTGNGGAATATACCCCGGCACNGCTCCCACANAACNGGCTCGCCAACTTCCGGCCACAAC ACCGGCCAAACCGGNTCAACAACACAGGTTNATTCACNGGCTACCCCAATCTATGGGGAA TTCATCACAAACCGCTTGGCGNCCCCGCGACCATGGCAAANCNGANGCTTCGGACATNTC GATCCCCTTANCATGGGCNTCACNCACTNACACNCCACNACCGGCACCNAACGCCCTCGG NNTTACACCACCTNCAACCCAACATNACCGNAGCNCNNNGGCGACTTGGGCGNNAACNNA CCTANAATTAACACACTTCTTATAACGGAGGACAACGCANNGACACCGGANACATGNGNC NGCCCCACATTTTGTCAGACTNAACTATTGACCCCATGGCGGTATGGGTACCCCCGCTAT TTACAACNNGGTTAGCGGTACTAGGTCTGGTNCCCAAATAGACTACTCTNGCCANATTGA NTNNAAANAAAAATAGCNTCNNACAAGTCCCGTATCCCCTCAGATGGTTGACCCAAACNG ACNAGTTTNATCCCCTTAAACTTGNTATACACCCAAAAGATACAGCGACACNACAGTTGA TCAACANTCA



consensusID : consensus_1446#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 700
fasta sequence
                              [CCGAAGCGATCGGTGGAGAGCATTATTCAAACGTTGCGGTTATTTTTTGCTCATTTGCTTCCCCCTCGGTCCTGCGTTCGAACTCCCTGGCGGTACCTGCCATACCGCATCACCAGCTTGCCAAACGAATGCCAAAGTGGAACAGCTGGTACCGATTTTGCAGCGCTGGGATCTGTTCGTGAGGATTTGGTCTGCCGGTATGGCAAACGAGATAACCACGGAACAGCATCCGGAGGCCACGGGCACAGTGACCGTTTACCTATCGCCCTTCGTGTCGGTTGGGGCCTGTTTTGTGATATCCGTAATTTATGTCGCTAGCTTGTACGTATGGAACTCCAAACACGACCGCGATCATCCTTCAACCATAAAGCGACGGTTTTTTAGCGTGTTTGTGGTAATGCTCGTAGCTCCATTTTTCGTGCTAACCCTTACCAGCAAGGATGTGTTCCAGCGGTACACGATGTGGCAGATAATGGGCTTCCGGAAGGAAGGGCTGTTTACCGCCACGTTCGTTCCCCTGCTCCTCACGAATGGTTCTTGTTTCTCGGTCCGCTCAGCGTACAGCTATCGAACGGCATCTGGCGCATCTACTTCCGAGCCGATGTACTGGACTGAATGCGGTGCGCAATCTGGTGTGGCTGCGGAACCACCTCGTGGCGCCACTGGTCGGAGGAATTCACCTTTCGTGCCTGTATGTTGC]

[+] EMBL BM584100             [CCGAAGCGATCGGTGGAGAGCATTATTCAAACGTTGCGGTTATTTTTTGCTCATTTGCTTCCCCCTCGGTCCTGCGTTCGAACTCCCTGGCGGTACCTGCCATACCGCATCACCAGCTTGCCAAACGAATGCCAAAGTGGAACAGCTGGTACCGATTTTGCAGCGCTGGGATCTGTTCGTGAGGATTTGGTCTGCCGGTATGGCAAACGAGATAACCACGGAACAGCATCCGGAGGCCACGGGCACAGTGACCGTTTACCTATCGCCCTTCGTGTCGGTTGGGGCCTGTTTTGTGATATCCGTAATTTATGTCGCTAGCTTGTACGTATGGAACTCCAAACACGACCGCGATCATCCTTCAACCATAAAGCGACGGTTTTTTAGCGTGTTTGTGGTAATGCTCGTAGCTCCATTTTTCGTGCTAACCCTTACCAGCAAGGATGTGTTCCAGCGGTACACGATGTGGCAGATAATGGGCTTCCGGAAGGAAGGGCTGTTTACCGCCACGTTCGTTCCCCTGCTCCTCACGAATGGTTCTTGTTTCTCGGTCCGCTCAGCGTACAGCTATCGAACGGCATCTGGCGCATCTACTTCCGAGCCGATGTACTGGACTGAATGCGGTGCGCAATCTGGTGTGGCTGCGGAACCACCTCGTGGCGCCACTGGTCGGAGGAATTCACCTTTCGTGCCTGTATGTTGC]


>consensus_1446#1 CCGAAGCGATCGGTGGAGAGCATTATTCAAACGTTGCGGTTATTTTTTGCTCATTTGCTT CCCCCTCGGTCCTGCGTTCGAACTCCCTGGCGGTACCTGCCATACCGCATCACCAGCTTG CCAAACGAATGCCAAAGTGGAACAGCTGGTACCGATTTTGCAGCGCTGGGATCTGTTCGT GAGGATTTGGTCTGCCGGTATGGCAAACGAGATAACCACGGAACAGCATCCGGAGGCCAC GGGCACAGTGACCGTTTACCTATCGCCCTTCGTGTCGGTTGGGGCCTGTTTTGTGATATC CGTAATTTATGTCGCTAGCTTGTACGTATGGAACTCCAAACACGACCGCGATCATCCTTC AACCATAAAGCGACGGTTTTTTAGCGTGTTTGTGGTAATGCTCGTAGCTCCATTTTTCGT GCTAACCCTTACCAGCAAGGATGTGTTCCAGCGGTACACGATGTGGCAGATAATGGGCTT CCGGAAGGAAGGGCTGTTTACCGCCACGTTCGTTCCCCTGCTCCTCACGAATGGTTCTTG TTTCTCGGTCCGCTCAGCGTACAGCTATCGAACGGCATCTGGCGCATCTACTTCCGAGCC GATGTACTGGACTGAATGCGGTGCGCAATCTGGTGTGGCTGCGGAACCACCTCGTGGCGC CACTGGTCGGAGGAATTCACCTTTCGTGCCTGTATGTTGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1446#0      GCAGAATCCCCCGAGTTATTTCTCGGTCGCTCAGCGTACAGCTATNGAACGGTNATCTGG 60
consensus_1446#1      ------------------------------------------------------------
                                                                                  

consensus_1446#0      CGCATCTACTCCGAGCCGATGTACTGGATAGAATGCGGTGCGCAATCTGGTGTGGCTGCG 120
consensus_1446#1      ----------------------------------------------------------CC 2
                                                                                * 

consensus_1446#0      GAACCACCTCGTGGCGC-CACTGTACGGAGGAATTCACCTTTCGTGCCTGCTATGTTGCC 179
consensus_1446#1      GAAGCGATCGGTGGAGAGCATTATTCAAACG---TTGCGGTTATTTTTTGCTCATTTGCT 59
                      *** *     **** *  ** * * *  * *   *  *  **  *   ****   **** 

consensus_1446#0      CCTGACTGCTGCAAACGTTATCGACCATCAATCGCAATGCTGATCACACCGNTATCTGTA 239
consensus_1446#1      TCCCCCTCGGTCCTGCGT--TCGAAC-TCCCTGGCGGTACCTGCCATACCGC-ATCACCA 115
                       *   **    *   ***  **** * **  * **  * *    ** ****  ***   *

consensus_1446#0      TCGGGCTGGACGCATACTGNAACATATTAAGGAGCGCCTGCAGAACAGGGGCGCCCACTG 299
consensus_1446#1      GCTTGCCAAACGAATGCCAAAGTGGAACAGCTGGTACCGATTTTGCAGCGCTGGGATCTG 175
                       *  **   *** ** *   *    *  *    *  **       *** *  *    ***

consensus_1446#0      ACGGGNAGGTGCTGATAACTATCGTTCTTCCAAAATATTCACTACANACAACCAATCTTA 359
consensus_1446#1      TTCGTGAGGATTTGGT--CTGCCGGTATGGCAAACGAGATAAC-CACGGAACAGCATCCG 232
                         *  ***   ** *  **  ** * *  ****  *   *   **   ***        

consensus_1446#0      TGGGCCATTCTTACCTCGGGCACCATCCTATTCCGGTGCAGGGTCCGCGAGACANTNTAT 419
consensus_1446#1      GAGGCCACGGGCACAGTGACCGTTTACCTATCGCCCTTCGTGTCGGTTGGGGCCTGTTTT 292
                        *****     **   *  *     *****  *  * *  *      * * *    * *

consensus_1446#0      ATGGTACGNAANCCNGCTACACGGTNG-TTGNNCATGCCNTATCCCTGGAAACCCCACTT 478
consensus_1446#1      GTGATATCCGTAATTTATGT-CGCTAGCTTGTACGTATGGAACTCC---AAACACGACCG 348
                       ** **           *   ** * * ***  * *     *  **   **** * **  

consensus_1446#0      CATTGNGGAATATACCCCGGCACNGCTCCCACANAACNGGCTCGCCA-ACTTCCGGCCAC 537
consensus_1446#1      CGATCATCCTTCAACCATAAAGCGACGGTTTTTTAGCGTGTTTGTGGTAATGCTCGTAGC 408
                      *  *      *  ***      *  *        * *  * * *    * * *  *   *

consensus_1446#0      AACACCGGCCAAACCGGNTC--AACAACACAGGTTNATTCACNGGCTACCCCAATCTATG 595
consensus_1446#1      TCCATTTTTCGTGCTAACCCTTACCAGCAAGGATGTGTTCCAGCGGTACACGATGTGGCA 468
                        **     *   *     *  * ** **  * *   ***    * *** * *       

consensus_1446#0      GGGAATTCATCACAAACCGCTTGGCGNCCCCGCGACCATGGCAAANCNGANGCTTCGGAC 655
consensus_1446#1      GATAATGGGCTTCCGGAAGGAAGGGCTGTTTACCGCCACGTTCGTTCCCCTGCTCCTCAC 528
                      *  ***      *     *   **        *  *** *      *    *** *  **

consensus_1446#0      ATNTCGATCCCCTTANCATGGGCNTCACNCACTNACACNCCACNACCGGCACCNAACGCC 715
consensus_1446#1      GAAT-GGTTCTTGTTTCTCGGTCCGCTCA-GCGTACAGCTATCGAACGGCATCTGGCGCA 586
                         * * * *   *  *  ** *  * *   *  ***     * * ***** *   *** 

consensus_1446#0      CTCGGNNTTACACCACCTNCAACCCAACATNACCGNAGCNCNNNGGC-GACTTGGGCGNN 774
consensus_1446#1      TCTACTTCCGAGCCGATGT--ACTGGAC-TGAATGCGGTGCGCAATCTGGTGTGGCTGCG 643
                                  **       **   ** * *  *  *  *     * *   ***  *  

consensus_1446#0      AACNNACCTANAATTAACACACTTCTTATAACGGAGGACAACGCANNGACACCGGANACA 834
consensus_1446#1      GAACCACCTCGTG-----GCGCCACTGGT--CGGAGGA--ATTCACCTTTCGTGCCTGTA 694
                       *   ****          * *  **  *  *******  *  **        *     *

consensus_1446#0      TGNGNCNGCCCCACATTTTGTCAGACTNAACTATTGACCCCATGGCGGTATGGGTACCCC 894
consensus_1446#1      TGTTGC------------------------------------------------------ 700
                      **   *                                                      

consensus_1446#0      CGCTATTTACAACNNGGTTAGCGGTACTAGGTCTGGTNCCCAAATAGACTACTCTNGCCA 954
consensus_1446#1      ------------------------------------------------------------
                                                                                  

consensus_1446#0      NATTGANTNNAAANAAAAATAGCNTCNNACAAGTCCCGTATCCCCTCAGATGGTTGACCC 1014
consensus_1446#1      ------------------------------------------------------------
                                                                                  

consensus_1446#0      AAACNGACNAGTTTNATCCCCTTAAACTTGNTATACACCCAAAAGATACAGCGACACNAC 1074
consensus_1446#1      ------------------------------------------------------------
                                                                                  

consensus_1446#0      AGTTGATCAACANTCA 1090
consensus_1446#1      ----------------
                                      




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)