These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1446#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1090 fasta sequence [GCAGAATCCCCCGAGTTATTTCTCGGTCGCTCAGCGTACAGCTATNGAACGGTNATCTGGCGCATCTACTCCGAGCCGATGTACTGGATAGAATGCGGTGCGCAATCTGGTGTGGCTGCGGAACCACCTCGTGGCGCCACTGTACGGAGGAATTCACCTTTCGTGCCTGCTATGTTGCCCCTGACTGCTGCAAACGTTATCGACCATCAATCGCAATGCTGATCACACCGNTATCTGTATCGGGCTGGACGCATACTGNAACATATTAAGGAGCGCCTGCAGAACAGGGGCGCCCACTGACGGGNAGGTGCTGATAACTATCGTTCTTCCAAAATATTCACTACANACAACCAATCTTATGGGCCATTCTTACCTCGGGCACCATCCTATTCCGGTGCAGGGTCCGCGAGACANTNTATATGGTACGNAANCCNGCTACACGGTNGTTGNNCATGCCNTATCCCTGGAAACCCCACTTCATTGNGGAATATACCCCGGCACNGCTCCCACANAACNGGCTCGCCAACTTCCGGCCACAACACCGGCCAAACCGGNTCAACAACACAGGTTNATTCACNGGCTACCCCAATCTATGGGGAATTCATCACAAACCGCTTGGCGNCCCCGCGACCATGGCAAANCNGANGCTTCGGACATNTCGATCCCCTTANCATGGGCNTCACNCACTNACACNCCACNACCGGCACCNAACGCCCTCGGNNTTACACCACCTNCAACCCAACATNACCGNAGCNCNNNGGCGACTTGGGCGNNAACNNACCTANAATTAACACACTTCTTATAACGGAGGACAACGCANNGACACCGGANACATGNGNCNGCCCCACATTTTGTCAGACTNAACTATTGACCCCATGGCGGTATGGGTACCCCCGCTATTTACAACNNGGTTAGCGGTACTAGGTCTGGTNCCCAAATAGACTACTCTNGCCANATTGANTNNAAANAAAAATAGCNTCNNACAAGTCCCGTATCCCCTCAGATGGTTGACCCAAACNGACNAGTTTNATCCCCTTAAACTTGNTATACACCCAAAAGATACAGCGACACNACAGTTGATCAACANTCA] [+] EMBL AL692220 [GCAGAATCCCCCGAGTTATTTCTCGGTCGCTCAGCGTACAGCTATNGAACGGTNATCTGGCGCATCTACTCCGAGCCGATGTACTGGATAGAATGCGGTGCGCAATCTGGTGTGGCTGCGGAACCACCTCGTGGCGCCACTGTACGGAGGAATTCACCTTTCGTGCCTGCTATGTTGCCCCTGACTGCTGCAAACGTTATCGACCATCAATCGCAATGCTGATCACACCGNTATCTGTATCGGGCTGGACGCATACTGNAACATATTAAGGAGCGCCTGCAGAACAGGGGCGCCCACTGACGGGNAGGTGCTGATAACTATCGTTCTTCCAAAATATTCACTACANACAACCAATCTTATGGGCCATTCTTACCTCGGGCACCATCCTATTCCGGTGCAGGGTCCGCGAGACANTNTATATGGTACGNAANCCNGCTACACGGTNGTTGNNCATGCCNTATCCCTGGAAACCCCACTTCATTGNGGAATATACCCCGGCACNGCTCCCACANAACNGGCTCGCCAACTTCCGGCCACAACACCGGCCAAACCGGNTCAACAACACAGGTTNATTCACNGGCTACCCCAATCTATGGGGAATTCATCACAAACCGCTTGGCGNCCCCGCGACCATGGCAAANCNGANGCTTCGGACATNTCGATCCCCTTANCATGGGCNTCACNCACTNACACNCCACNACCGGCACCNAACGCCCTCGGNNTTACACCACCTNCAACCCAACATNACCGNAGCNCNNNGGCGACTTGGGCGNNAACNNACCTANAATTAACACACTTCTTATAACGGAGGACAACGCANNGACACCGGANACATGNGNCNGCCCCACATTTTGTCAGACTNAACTATTGACCCCATGGCGGTATGGGTACCCCCGCTATTTACAACNNGGTTAGCGGTACTAGGTCTGGTNCCCAAATAGACTACTCTNGCCANATTGANTNNAAANAAAAATAGCNTCNNACAAGTCCCGTATCCCCTCAGATGGTTGACCCAAACNGACNAGTTTNATCCCCTTAAACTTGNTATACACCCAAAAGATACAGCGACACNACAGTTGATCAACANTCA] consensusID : consensus_1446#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 700 fasta sequence [CCGAAGCGATCGGTGGAGAGCATTATTCAAACGTTGCGGTTATTTTTTGCTCATTTGCTTCCCCCTCGGTCCTGCGTTCGAACTCCCTGGCGGTACCTGCCATACCGCATCACCAGCTTGCCAAACGAATGCCAAAGTGGAACAGCTGGTACCGATTTTGCAGCGCTGGGATCTGTTCGTGAGGATTTGGTCTGCCGGTATGGCAAACGAGATAACCACGGAACAGCATCCGGAGGCCACGGGCACAGTGACCGTTTACCTATCGCCCTTCGTGTCGGTTGGGGCCTGTTTTGTGATATCCGTAATTTATGTCGCTAGCTTGTACGTATGGAACTCCAAACACGACCGCGATCATCCTTCAACCATAAAGCGACGGTTTTTTAGCGTGTTTGTGGTAATGCTCGTAGCTCCATTTTTCGTGCTAACCCTTACCAGCAAGGATGTGTTCCAGCGGTACACGATGTGGCAGATAATGGGCTTCCGGAAGGAAGGGCTGTTTACCGCCACGTTCGTTCCCCTGCTCCTCACGAATGGTTCTTGTTTCTCGGTCCGCTCAGCGTACAGCTATCGAACGGCATCTGGCGCATCTACTTCCGAGCCGATGTACTGGACTGAATGCGGTGCGCAATCTGGTGTGGCTGCGGAACCACCTCGTGGCGCCACTGGTCGGAGGAATTCACCTTTCGTGCCTGTATGTTGC] [+] EMBL BM584100 [CCGAAGCGATCGGTGGAGAGCATTATTCAAACGTTGCGGTTATTTTTTGCTCATTTGCTTCCCCCTCGGTCCTGCGTTCGAACTCCCTGGCGGTACCTGCCATACCGCATCACCAGCTTGCCAAACGAATGCCAAAGTGGAACAGCTGGTACCGATTTTGCAGCGCTGGGATCTGTTCGTGAGGATTTGGTCTGCCGGTATGGCAAACGAGATAACCACGGAACAGCATCCGGAGGCCACGGGCACAGTGACCGTTTACCTATCGCCCTTCGTGTCGGTTGGGGCCTGTTTTGTGATATCCGTAATTTATGTCGCTAGCTTGTACGTATGGAACTCCAAACACGACCGCGATCATCCTTCAACCATAAAGCGACGGTTTTTTAGCGTGTTTGTGGTAATGCTCGTAGCTCCATTTTTCGTGCTAACCCTTACCAGCAAGGATGTGTTCCAGCGGTACACGATGTGGCAGATAATGGGCTTCCGGAAGGAAGGGCTGTTTACCGCCACGTTCGTTCCCCTGCTCCTCACGAATGGTTCTTGTTTCTCGGTCCGCTCAGCGTACAGCTATCGAACGGCATCTGGCGCATCTACTTCCGAGCCGATGTACTGGACTGAATGCGGTGCGCAATCTGGTGTGGCTGCGGAACCACCTCGTGGCGCCACTGGTCGGAGGAATTCACCTTTCGTGCCTGTATGTTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1446#0 GCAGAATCCCCCGAGTTATTTCTCGGTCGCTCAGCGTACAGCTATNGAACGGTNATCTGG 60 consensus_1446#1 ------------------------------------------------------------ consensus_1446#0 CGCATCTACTCCGAGCCGATGTACTGGATAGAATGCGGTGCGCAATCTGGTGTGGCTGCG 120 consensus_1446#1 ----------------------------------------------------------CC 2 * consensus_1446#0 GAACCACCTCGTGGCGC-CACTGTACGGAGGAATTCACCTTTCGTGCCTGCTATGTTGCC 179 consensus_1446#1 GAAGCGATCGGTGGAGAGCATTATTCAAACG---TTGCGGTTATTTTTTGCTCATTTGCT 59 *** * **** * ** * * * * * * * ** * **** **** consensus_1446#0 CCTGACTGCTGCAAACGTTATCGACCATCAATCGCAATGCTGATCACACCGNTATCTGTA 239 consensus_1446#1 TCCCCCTCGGTCCTGCGT--TCGAAC-TCCCTGGCGGTACCTGCCATACCGC-ATCACCA 115 * ** * *** **** * ** * ** * * ** **** *** * consensus_1446#0 TCGGGCTGGACGCATACTGNAACATATTAAGGAGCGCCTGCAGAACAGGGGCGCCCACTG 299 consensus_1446#1 GCTTGCCAAACGAATGCCAAAGTGGAACAGCTGGTACCGATTTTGCAGCGCTGGGATCTG 175 * ** *** ** * * * * * ** *** * * *** consensus_1446#0 ACGGGNAGGTGCTGATAACTATCGTTCTTCCAAAATATTCACTACANACAACCAATCTTA 359 consensus_1446#1 TTCGTGAGGATTTGGT--CTGCCGGTATGGCAAACGAGATAAC-CACGGAACAGCATCCG 232 * *** ** * ** ** * * **** * * ** *** consensus_1446#0 TGGGCCATTCTTACCTCGGGCACCATCCTATTCCGGTGCAGGGTCCGCGAGACANTNTAT 419 consensus_1446#1 GAGGCCACGGGCACAGTGACCGTTTACCTATCGCCCTTCGTGTCGGTTGGGGCCTGTTTT 292 ***** ** * * ***** * * * * * * * * * consensus_1446#0 ATGGTACGNAANCCNGCTACACGGTNG-TTGNNCATGCCNTATCCCTGGAAACCCCACTT 478 consensus_1446#1 GTGATATCCGTAATTTATGT-CGCTAGCTTGTACGTATGGAACTCC---AAACACGACCG 348 ** ** * ** * * *** * * * ** **** * ** consensus_1446#0 CATTGNGGAATATACCCCGGCACNGCTCCCACANAACNGGCTCGCCA-ACTTCCGGCCAC 537 consensus_1446#1 CGATCATCCTTCAACCATAAAGCGACGGTTTTTTAGCGTGTTTGTGGTAATGCTCGTAGC 408 * * * *** * * * * * * * * * * * * consensus_1446#0 AACACCGGCCAAACCGGNTC--AACAACACAGGTTNATTCACNGGCTACCCCAATCTATG 595 consensus_1446#1 TCCATTTTTCGTGCTAACCCTTACCAGCAAGGATGTGTTCCAGCGGTACACGATGTGGCA 468 ** * * * * ** ** * * *** * *** * * consensus_1446#0 GGGAATTCATCACAAACCGCTTGGCGNCCCCGCGACCATGGCAAANCNGANGCTTCGGAC 655 consensus_1446#1 GATAATGGGCTTCCGGAAGGAAGGGCTGTTTACCGCCACGTTCGTTCCCCTGCTCCTCAC 528 * *** * * ** * *** * * *** * ** consensus_1446#0 ATNTCGATCCCCTTANCATGGGCNTCACNCACTNACACNCCACNACCGGCACCNAACGCC 715 consensus_1446#1 GAAT-GGTTCTTGTTTCTCGGTCCGCTCA-GCGTACAGCTATCGAACGGCATCTGGCGCA 586 * * * * * * ** * * * * *** * * ***** * *** consensus_1446#0 CTCGGNNTTACACCACCTNCAACCCAACATNACCGNAGCNCNNNGGC-GACTTGGGCGNN 774 consensus_1446#1 TCTACTTCCGAGCCGATGT--ACTGGAC-TGAATGCGGTGCGCAATCTGGTGTGGCTGCG 643 ** ** ** * * * * * * * *** * consensus_1446#0 AACNNACCTANAATTAACACACTTCTTATAACGGAGGACAACGCANNGACACCGGANACA 834 consensus_1446#1 GAACCACCTCGTG-----GCGCCACTGGT--CGGAGGA--ATTCACCTTTCGTGCCTGTA 694 * **** * * ** * ******* * ** * * consensus_1446#0 TGNGNCNGCCCCACATTTTGTCAGACTNAACTATTGACCCCATGGCGGTATGGGTACCCC 894 consensus_1446#1 TGTTGC------------------------------------------------------ 700 ** * consensus_1446#0 CGCTATTTACAACNNGGTTAGCGGTACTAGGTCTGGTNCCCAAATAGACTACTCTNGCCA 954 consensus_1446#1 ------------------------------------------------------------ consensus_1446#0 NATTGANTNNAAANAAAAATAGCNTCNNACAAGTCCCGTATCCCCTCAGATGGTTGACCC 1014 consensus_1446#1 ------------------------------------------------------------ consensus_1446#0 AAACNGACNAGTTTNATCCCCTTAAACTTGNTATACACCCAAAAGATACAGCGACACNAC 1074 consensus_1446#1 ------------------------------------------------------------ consensus_1446#0 AGTTGATCAACANTCA 1090 consensus_1446#1 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||