These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1448#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence [CCGCGGACGCGTGGGTGCTGACCAGCGGTGCCGGAGGGAAAACGTAGTGCTCCCCACCGTTTTGTGTAGAATGTACGTGCGATTTGCGATTAAGCTTTACTGCCGACGCTGCCACACTGGACGCACATTACGCAAAGTAAAGAGAATCTGTGCACGATACTGACGAGTGCGAAAATGTCCGACGATGACACACCACGTACAGCTGTGTCCCCGCCATTAAACTGCGCAAAACCGGAGACCGCACCATCATCACCCGATGAGCTAGAACATCGCGAACAGCGGCAGCTCGCCGAAAAGGGGCAACCCGTGGTGGAGGATGTGAAAGTGAAACGTGAAACAGAACGAGAAACAGAACCGACCGAACTGAACGGTGCTAGTAGTAGGGTGCTGCCGCCGCCGCTGAACCGACCGGATGACCATGAAGCGATAACGAACAGGCAACGAAAATGCGTTCAATTTACGACCCCAGCAGCGGCGGGCAGCGCGACTGCCGACGACACGCTGCTCAAGTTTATCGAAGGTGAGGAAATATTGGACAAAGAGAACCCGTTCAAAACCGACGAGCAGGCGAGCGTGCTGGAGAAGCAATACGGTGCCGCACACCGCCAAACGGACAGTGTGCGCGATAAAACTTTTCCCGGTAACGCTGCCAGTATCGACGATGATGATGA] [+] EMBL BM615353 [CCGCGGACGCGTGGGTGCTGACCAGCGGTGCCGGAGGGAAAACGTAGTGCTCCCCACCGTTTTGTGTAGAATGTACGTGCGATTTGCGATTAAGCTTTACTGCCGACGCTGCCACACTGGACGCACATTACGCAAAGTAAAGAGAATCTGTGCACGATACTGACGAGTGCGAAAATGTCCGACGATGACACACCACGTACAGCTGTGTCCCCGCCATTAAACTGCGCAAAACCGGAGACCGCACCATCATCACCCGATGAGCTAGAACATCGCGAACAGCGGCAGCTCGCCGAAAAGGGGCAACCCGTGGTGGAGGATGTGAAAGTGAAACGTGAAACAGAACGAGAAACAGAACCGACCGAACTGAACGGTGCTAGTAGTAGGGTGCTGCCGCCGCCGCTGAACCGACCGGATGACCATGAAGCGATAACGAACAGGCAACGAAAATGCGTTCAATTTACGACCCCAGCAGCGGCGGGCAGCGCGACTGCCGACGACACGCTGCTCAAGTTTATCGAAGGTGAGGAAATATTGGACAAAGAGAACCCGTTCAAAACCGACGAGCAGGCGAGCGTGCTGGAGAAGCAATACGGTGCCGCACACCGCCAAACGGACAGTGTGCGCGATAAAACTTTTCCCGGTAACGCTGCCAGTATCGACGATGATGATGA] consensusID : consensus_1448#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence [CCGCGGACGGTTATCGGAAATGGTTTATTTATTTTTCGTGTGACTTTTAGCAAACTTCTCGTCGTTCTACTTGCTGATAAGGTGCCGTCGCCATGCTGACCAGCGGTGCCGGAGGGAAAACGTAGTGCTCCCCACCGTTTTGTGTAGAATGTACGTGCGATTTGCGATTAAGCTTTACTGCCGACGCTGCCACACTGGACGCACATTACGCAAAGTAAAGAGAATCTGTGCACGATACTGACGAGTGCGAAAATGTCCGACGATGACACACCACGTACAGCTGTGTCCCCGCCATTAAACTGCGCAAAACCGGAGACCGCACCATCATCACCCGATGAGCTAGAACATCGCGAACAGCGGCAGCTCGCCGAAAAGGGGCAACCCGTGGTGGAGGATGTGAAAGTGAAACGTGAAACAGAACGAGAAACAGAACCGACCGAACTGAACGGTGCTAGTAGTAGGGTGCTGCCGCCGCCGCTGAACCGACCGGATGACCATGAAGCGATAACGAACAGGCAACGAAAATGCGTTCAATTTACGACCCCAGCAGCGGCGGGCAGCGCGACTGCCGACGA] [+] EMBL BM589273 [CCGCGGACGGTTATCGGAAATGGTTTATTTATTTTTCGTGTGACTTTTAGCAAACTTCTCGTCGTTCTACTTGCTGATAAGGTGCCGTCGCCATGCTGACCAGCGGTGCCGGAGGGAAAACGTAGTGCTCCCCACCGTTTTGTGTAGAATGTACGTGCGATTTGCGATTAAGCTTTACTGCCGACGCTGCCACACTGGACGCACATTACGCAAAGTAAAGAGAATCTGTGCACGATACTGACGAGTGCGAAAATGTCCGACGATGACACACCACGTACAGCTGTGTCCCCGCCATTAAACTGCGCAAAACCGGAGACCGCACCATCATCACCCGATGAGCTAGAACATCGCGAACAGCGGCAGCTCGCCGAAAAGGGGCAACCCGTGGTGGAGGATGTGAAAGTGAAACGTGAAACAGAACGAGAAACAGAACCGACCGAACTGAACGGTGCTAGTAGTAGGGTGCTGCCGCCGCCGCTGAACCGACCGGATGACCATGAAGCGATAACGAACAGGCAACGAAAATGCGTTCAATTTACGACCCCAGCAGCGGCGGGCAGCGCGACTGCCGACGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1448#0 ------------------------------------------------------------ consensus_1448#1 CCGCGGACGGTTATCGGAAATGGTTTATTTATTTTTCGTGTGACTTTTAGCAAACTTCTC 60 consensus_1448#0 ----------------CCGCGGACGCGTGG--GTGCTGACCAGCGGTGCCGGAGGGAAAA 42 consensus_1448#1 GTCGTTCTACTTGCTGATAAGGTGCCGTCGCCATGCTGACCAGCGGTGCCGGAGGGAAAA 120 ** *** * *************************** consensus_1448#0 CGTAGTGCTCCCCACCGTTTTGTGTAGAATGTACGTGCGATTTGCGATTAAGCTTTACTG 102 consensus_1448#1 CGTAGTGCTCCCCACCGTTTTGTGTAGAATGTACGTGCGATTTGCGATTAAGCTTTACTG 180 ************************************************************ consensus_1448#0 CCGACGCTGCCACACTGGACGCACATTACGCAAAGTAAAGAGAATCTGTGCACGATACTG 162 consensus_1448#1 CCGACGCTGCCACACTGGACGCACATTACGCAAAGTAAAGAGAATCTGTGCACGATACTG 240 ************************************************************ consensus_1448#0 ACGAGTGCGAAAATGTCCGACGATGACACACCACGTACAGCTGTGTCCCCGCCATTAAAC 222 consensus_1448#1 ACGAGTGCGAAAATGTCCGACGATGACACACCACGTACAGCTGTGTCCCCGCCATTAAAC 300 ************************************************************ consensus_1448#0 TGCGCAAAACCGGAGACCGCACCATCATCACCCGATGAGCTAGAACATCGCGAACAGCGG 282 consensus_1448#1 TGCGCAAAACCGGAGACCGCACCATCATCACCCGATGAGCTAGAACATCGCGAACAGCGG 360 ************************************************************ consensus_1448#0 CAGCTCGCCGAAAAGGGGCAACCCGTGGTGGAGGATGTGAAAGTGAAACGTGAAACAGAA 342 consensus_1448#1 CAGCTCGCCGAAAAGGGGCAACCCGTGGTGGAGGATGTGAAAGTGAAACGTGAAACAGAA 420 ************************************************************ consensus_1448#0 CGAGAAACAGAACCGACCGAACTGAACGGTGCTAGTAGTAGGGTGCTGCCGCCGCCGCTG 402 consensus_1448#1 CGAGAAACAGAACCGACCGAACTGAACGGTGCTAGTAGTAGGGTGCTGCCGCCGCCGCTG 480 ************************************************************ consensus_1448#0 AACCGACCGGATGACCATGAAGCGATAACGAACAGGCAACGAAAATGCGTTCAATTTACG 462 consensus_1448#1 AACCGACCGGATGACCATGAAGCGATAACGAACAGGCAACGAAAATGCGTTCAATTTACG 540 ************************************************************ consensus_1448#0 ACCCCAGCAGCGGCGGGCAGCGCGACTGCCGACGACACGCTGCTCAAGTTTATCGAAGGT 522 consensus_1448#1 ACCCCAGCAGCGGCGGGCAGCGCGACTGCCGACGA------------------------- 575 *********************************** consensus_1448#0 GAGGAAATATTGGACAAAGAGAACCCGTTCAAAACCGACGAGCAGGCGAGCGTGCTGGAG 582 consensus_1448#1 ------------------------------------------------------------ consensus_1448#0 AAGCAATACGGTGCCGCACACCGCCAAACGGACAGTGTGCGCGATAAAACTTTTCCCGGT 642 consensus_1448#1 ------------------------------------------------------------ consensus_1448#0 AACGCTGCCAGTATCGACGATGATGATGA 671 consensus_1448#1 ----------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||