|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1450#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 711 fasta sequence
[CCGAAAAGATTTGTAGTTGAAACTGCCTAAAAATTGTTCCGGGAAATTACTTCGGATATACCGCCATCGCGTACATAGAACATCCACCGAATAGCGGCAGCAGCAGCAGCGATTCAAAGTGTTTGTGTGTGTGTGTGTATGTATGTGTGCGCGAAGATTCGTCTTGCGGGCGTTTCTCTCTCTCCTCGGTAGATTTGATGGCGCGGGTACGGTTCCGTCGCCAAGTGCAGTTTGCAGCCATAGTTTCGTCCCTGCCAAAAGGAGTGTGAAAAGATCTTCTAGTAGAGTATCTCTTAACGGCGCACGACGGCGGTTGGTGGTGGTTGTCCATTTTGGGTTTTTTTCGCTTTACTTCACGTGGACGATAATGCAATGAATCGGTGCTGTGCGATTTCAGCGGTATCATATCGGTATCAAGCATGAGCATAAAACATGAGCGTGAAGATCGGAAAACTGAAATGAGCGAAACCCCCGGAGTCGTCGATATAGAACACCTTAGGCAAATGAGCCATTCGTACGAAGAAGTTGTGTTTCGGTTGATATAAGTAAATGCGGAAATTGGCTGTGGCTCACAAACGAAACGAAGGATACACTGTAGCTGGCTGATTACAGGAATTGTTCCATAAGTTGATCTTTATTCGGAGAACAAAATTAGGTGGCGATTATTCACCGTATAGCGTAGGACAGATGACCATCTAACCATTGCACTGC]
[+] EMBL BM610194 [CCGAAAAGATTTGTAGTTGAAACTGCCTAAAAATTGTTCCGGGAAATTACTTCGGATATACCGCCATCGCGTACATAGAACATCCACCGAATAGCGGCAGCAGCAGCAGCGATTCAAAGTGTTTGTGTGTGTGTGTGTATGTATGTGTGCGCGAAGATTCGTCTTGCGGGCGTTTCTCTCTCTCCTCGGTAGATTTGATGGCGCGGGTACGGTTCCGTCGCCAAGTGCAGTTTGCAGCCATAGTTTCGTCCCTGCCAAAAGGAGTGTGAAAAGATCTTCTAGTAGAGTATCTCTTAACGGCGCACGACGGCGGTTGGTGGTGGTTGTCCATTTTGGGTTTTTTTCGCTTTACTTCACGTGGACGATAATGCAATGAATCGGTGCTGTGCGATTTCAGCGGTATCATATCGGTATCAAGCATGAGCATAAAACATGAGCGTGAAGATCGGAAAACTGAAATGAGCGAAACCCCCGGAGTCGTCGATATAGAACACCTTAGGCAAATGAGCCATTCGTACGAAGAAGTTGTGTTTCGGTTGATATAAGTAAATGCGGAAATTGGCTGTGGCTCACAAACGAAACGAAGGATACACTGTAGCTGGCTGATTACAGGAATTGTTCCATAAGTTGATCTTTATTCGGAGAACAAAATTAGGTGGCGATTATTCACCGTATAGCGTAGGACAGATGACCATCTAACCATTGCACTGC]
consensusID : consensus_1450#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence
[CCGCCCACGCGTCCGATCAAGCATGAGCATAAAACATGAGCGTGAAGATCGGAAAACTGAAATGAGCGAAACCCCCGGAGTCGTCGATATAGAACACCTTAGGCAAATGAGCCATTCGTACGAAGAAGTTGTGTTTCGGTTGATATAAGTAAATGCGGAAATTGGCTGTGGCTCACAAACGAAACGAAGGATACACTGTAGCTGGCTGATTACAGGAATTGTTCCATAAGTTGATCTTTATTCGGAGAACAAAATTAGGTGGCGATTATTCACCGTATAGCGTAGGACAGATGACCATCTAACCATTGCACTGCTTCCGATTGCTCAAAAACTACAAAAGCGATCTAACTCGAACCAACTGCAAGGATATTCAAATAGTTCCTTTCGTTTTAAGAGAAGCTGTATTTATGTATATTTATTATTCACACTGTTTAAAAAAATGCATGCGCATATTGTATAAGTCGTCGTTAGCGTACGTCATATAAATTAAAAACACTCTGCGACTGATCCATTGCAAAAATGCCCATCAGCCTGTGTCTAACGAATTCGTGTGGCTCACCGTCTACCGTCGTGCCAGAGGCACCGCAAACGACTTGCACGGAGATGGACCGAGATCGACAGAATGTAAATGAAGATAATTGCGAAAAACAGTCCAACTCCAACAAAGTGTTTAAAAAATCAAC]
[+] EMBL BM654351 [CCGCCCACGCGTCCGATCAAGCATGAGCATAAAACATGAGCGTGAAGATCGGAAAACTGAAATGAGCGAAACCCCCGGAGTCGTCGATATAGAACACCTTAGGCAAATGAGCCATTCGTACGAAGAAGTTGTGTTTCGGTTGATATAAGTAAATGCGGAAATTGGCTGTGGCTCACAAACGAAACGAAGGATACACTGTAGCTGGCTGATTACAGGAATTGTTCCATAAGTTGATCTTTATTCGGAGAACAAAATTAGGTGGCGATTATTCACCGTATAGCGTAGGACAGATGACCATCTAACCATTGCACTGCTTCCGATTGCTCAAAAACTACAAAAGCGATCTAACTCGAACCAACTGCAAGGATATTCAAATAGTTCCTTTCGTTTTAAGAGAAGCTGTATTTATGTATATTTATTATTCACACTGTTTAAAAAAATGCATGCGCATATTGTATAAGTCGTCGTTAGCGTACGTCATATAAATTAAAAACACTCTGCGACTGATCCATTGCAAAAATGCCCATCAGCCTGTGTCTAACGAATTCGTGTGGCTCACCGTCTACCGTCGTGCCAGAGGCACCGCAAACGACTTGCACGGAGATGGACCGAGATCGACAGAATGTAAATGAAGATAATTGCGAAAAACAGTCCAACTCCAACAAAGTGTTTAAAAAATCAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1450#0 ------------CCGAAAAGATTTGTAGTTGAAACT---GCCTAAAAATTGTTCCGGGAA 45
consensus_1450#1 CCGCCCACGCGTCCGATCAAGCATGAGCATAAAACATGAGCGTGAAGATCGGAAAACTGA 60
**** * ** * **** ** * ** ** * *
consensus_1450#0 ATTACTTCGGATATACCGCCATCGCGTACATAGAACATCCACCGAATAGCGGCAGCAGCA 105
consensus_1450#1 AATGAG-CGAAACCCCCGGAGTCGTCGATATAGAACACCT------TAG--GCAAATGAG 111
* * ** * *** *** * ******** * *** *** *
consensus_1450#0 GCAGCGATTCAAAGTGTTTGTGTGTGTGTGTGTATGTATGTGTGCGCGAA---GATTCGT 162
consensus_1450#1 CCATTCGTACGAAGAAGTTGTGTTTCGGTTGATATAAGTAAATGCGGAAATTGGCTGTGG 171
** * * *** ****** * ** *** * **** ** * * *
consensus_1450#0 CTTGCGGGCGTTTCTCTCTCTCCTCGGTAGATTTGATGGCGCGGGTACGGTTCCGTC-GC 221
consensus_1450#1 CTCACAAACGAAACGAAGGATACACTGTAGCTGGCTGATTACAGGAATTGTTCCATAAGT 231
** * ** * * * * **** * * ** * ***** * *
consensus_1450#0 CAAGTGCAGTTTGCAGC-CATAGTTTCGTCCCTGCCAAAAGGAGTGTGAAAAGATCTTCT 280
consensus_1450#1 TGATCTTTATTCGGAGAACAAAATTAGGTGGCGATTATTCACCGTAT---AGCGTAGGAC 288
* ** * ** ** * ** ** * * ** * * *
consensus_1450#0 AGTAGAGTATCTCTTAACGGCGCACGACGGCGGTTGGTGGTGGTTGTCCATTTTGGGTTT 340
consensus_1450#1 AGATGACCATCTAACCATTGCAC-TGCTTCCGATTGCTCAAAAACTACAAAAGCGA---- 343
** ** **** * ** * * ** *** * * * *
consensus_1450#0 TTTTCGCTTTACTTCACGTGGACGATAATGCAATGAATCGGTGCTGTGCGATTTCAGCGG 400
consensus_1450#1 -TCTAACTCGAACCAACTGCAAGGATATTCAAATAGTTCCTTTCGTTTTAAGAGAAGCTG 402
* * ** * ** * **** * *** ** * * * * *** *
consensus_1450#0 TATCATATCGGTATCAAGCATGAGCATAAAACATGAGCGTGAAGATCGGAAAACTGAAAT 460
consensus_1450#1 TATT-TATGTATATTTATTATTCACACTGTTTAAAAAAATGC--ATGCGCATATTGTATA 459
*** *** *** * ** ** * * ** ** * * * ** *
consensus_1450#0 GAGCGAAACCCCCGGA-GTCGTCGATATAGAACACCTTAGGCAAATGAGCCATTCGTACG 519
consensus_1450#1 AGTCGTCGTTAGCGTACGTCATATAAATTAAAAACACTCTGCGACTGATCCAT---TGCA 516
** ** * *** * * ** ** ** * ** * *** **** * *
consensus_1450#0 AAGAAGTTGTGTTTCGGTTGATATA-AGTAAATGCGGAAATTGGCTGTGGCTCACAAACG 578
consensus_1450#1 AAAA---TGCCCATCAGCCTGTGTCTAACGAATTCGT--GTGGCTCACCGTCTACCGTCG 571
** * ** ** * * * * *** ** * * * ** **
consensus_1450#0 AAACGAAGGATACACTGTAGCTGGCTGATTACAGGAATTGTTCCATAA-GTTGATCTTTA 637
consensus_1450#1 TGCCAGAGG---CACCGCAAACGACTTGC-ACGGAGATGGACCGAGATCGACAGAATGTA 627
* *** *** * * * ** ** * ** * * * * * * **
consensus_1450#0 TTCGGAGAACAAAATTAGGTGGCGATTATTCACCGTATAGCGTAGGACAGATGACCATCT 697
consensus_1450#1 AATGAAGATAATTGCGAAAAACAGTCCAACTCCAACAAAGTGTTTAAAAAATCAAC---- 683
* *** * * * * * * ** ** * * ** * *
consensus_1450#0 AACCATTGCACTGC 711
consensus_1450#1 --------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||