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Anopheles gambiae
cluster # 1454 cluster # 1454       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1454#0 length = 692 sequences # 1  
consensus_1454#1 length = 657 sequences # 1  

consensusID : consensus_1454#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 692
fasta sequence
                              [TACCCTCTTCACATGGGACGGTAGAACTACTGGTGCTACCTATCAACGCACACGGATAATGCCTTCTTTCTTATTAGATTTAACCAATCCGTTCAATTCAAACTACTTTTGGCCACAAGGAGGCATATGGTACGCGTATTAAAAAGAGGGAAAAACTTGTACGCAAGGATACTATGAATATTCGGGACTTTCTCTTCGTTTCCATCATGTTTGCGAGATGAAATGTACATATATAAATATTATAGCACGATCTTGTTGCGGAAAGCCGAAGTAAAACTGTGCAGATGGCACCAGGCCCCAATTTTCAAACACACTAAAAAGCAAAAGAAGGATGTCCGCAAGGAAGAGATTTGATTAGAGAAAGGTGTTATTTTCAACCTCAAATGATATGACCCTGTAGAGACGCTACATAACCTTCCTAATTGCTAGCATTCTGTGGTGCTGTGGCGTTAGTCCTCTGTTAATTGAATTATTCCGGATCAACTGAGTTCGATCTGTTCTGTCGGTTGACGCCAAGATCTGTGAACATGTTAGGCTGACCTTTAACTGATATATCTAATCACTTTCCGTTGCAGTATCGTAACACCAGAAGCAACACACACACACAGCACCCTTACTCCTATTACGTTTCTTTGTTAGCACTATTATTACTAATTCTGCAGGCGCGCGCGCGCGAAATACATTTTTGTAGG]

[+] EMBL BX624702             [TACCCTCTTCACATGGGACGGTAGAACTACTGGTGCTACCTATCAACGCACACGGATAATGCCTTCTTTCTTATTAGATTTAACCAATCCGTTCAATTCAAACTACTTTTGGCCACAAGGAGGCATATGGTACGCGTATTAAAAAGAGGGAAAAACTTGTACGCAAGGATACTATGAATATTCGGGACTTTCTCTTCGTTTCCATCATGTTTGCGAGATGAAATGTACATATATAAATATTATAGCACGATCTTGTTGCGGAAAGCCGAAGTAAAACTGTGCAGATGGCACCAGGCCCCAATTTTCAAACACACTAAAAAGCAAAAGAAGGATGTCCGCAAGGAAGAGATTTGATTAGAGAAAGGTGTTATTTTCAACCTCAAATGATATGACCCTGTAGAGACGCTACATAACCTTCCTAATTGCTAGCATTCTGTGGTGCTGTGGCGTTAGTCCTCTGTTAATTGAATTATTCCGGATCAACTGAGTTCGATCTGTTCTGTCGGTTGACGCCAAGATCTGTGAACATGTTAGGCTGACCTTTAACTGATATATCTAATCACTTTCCGTTGCAGTATCGTAACACCAGAAGCAACACACACACACAGCACCCTTACTCCTATTACGTTTCTTTGTTAGCACTATTATTACTAATTCTGCAGGCGCGCGCGCGCGAAATACATTTTTGTAGG]


>consensus_1454#0 TACCCTCTTCACATGGGACGGTAGAACTACTGGTGCTACCTATCAACGCACACGGATAAT GCCTTCTTTCTTATTAGATTTAACCAATCCGTTCAATTCAAACTACTTTTGGCCACAAGG AGGCATATGGTACGCGTATTAAAAAGAGGGAAAAACTTGTACGCAAGGATACTATGAATA TTCGGGACTTTCTCTTCGTTTCCATCATGTTTGCGAGATGAAATGTACATATATAAATAT TATAGCACGATCTTGTTGCGGAAAGCCGAAGTAAAACTGTGCAGATGGCACCAGGCCCCA ATTTTCAAACACACTAAAAAGCAAAAGAAGGATGTCCGCAAGGAAGAGATTTGATTAGAG AAAGGTGTTATTTTCAACCTCAAATGATATGACCCTGTAGAGACGCTACATAACCTTCCT AATTGCTAGCATTCTGTGGTGCTGTGGCGTTAGTCCTCTGTTAATTGAATTATTCCGGAT CAACTGAGTTCGATCTGTTCTGTCGGTTGACGCCAAGATCTGTGAACATGTTAGGCTGAC CTTTAACTGATATATCTAATCACTTTCCGTTGCAGTATCGTAACACCAGAAGCAACACAC ACACACAGCACCCTTACTCCTATTACGTTTCTTTGTTAGCACTATTATTACTAATTCTGC AGGCGCGCGCGCGCGAAATACATTTTTGTAGG



consensusID : consensus_1454#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 657
fasta sequence
                              [ATCCCGAGGTTAATGTAGAATATTGTTTGTCTTGTTTTTNTTTTTCTTTCTTTTTTTCTGTTTCACTCCGTAGTCTTTTCTCTGGTGTGTGTGTGTGTTTTGTAAGCCAAGAGCAATAGTTTTGGTTACCTATTTTCCACTATTTGTCGATACTCACTGTTAGAGGGGTTTTTTGCTGGTATTTCAACACTTTTGCTCAATTTATGTTACGCTCTTCACATGGGACGGTAGAACTACTGGTGCTACCTACCAACGCCACACGGATAATGCCTTCTTTCTTATTAGATTTAACCAATCCATTCAATTCAAACTACTCTTGGCCACAAGGAGGCACATGGCGCGTTCATTAAAAATTGGGAAAATCAGTACGCAAGGATGCTATTTACATTCGGGGCTTTCTCTTCGTTTCCATCATGTTTGCGCAGATGCAAATGTACATATCATCACATCATTCATCAGCACGATCTTGTTGCGGCAAAGCCGAAGTAAAAACTGTGCAGATGGCCACCAGGCCCCAATTTTCAAACACACTAAAACAGCAANCACGACGGATGTCCGCAAGGGAAGAGGATTCTGACTTNNGCAGAAAGGTGTCACTTTTCAACTGCAAATGATATGACCCTGTAGAGACGCTACATAACCTTCCTAATTGCTAGC]

[+] EMBL AL692264             [ATCCCGAGGTTAATGTAGAATATTGTTTGTCTTGTTTTTNTTTTTCTTTCTTTTTTTCTGTTTCACTCCGTAGTCTTTTCTCTGGTGTGTGTGTGTGTTTTGTAAGCCAAGAGCAATAGTTTTGGTTACCTATTTTCCACTATTTGTCGATACTCACTGTTAGAGGGGTTTTTTGCTGGTATTTCAACACTTTTGCTCAATTTATGTTACGCTCTTCACATGGGACGGTAGAACTACTGGTGCTACCTACCAACGCCACACGGATAATGCCTTCTTTCTTATTAGATTTAACCAATCCATTCAATTCAAACTACTCTTGGCCACAAGGAGGCACATGGCGCGTTCATTAAAAATTGGGAAAATCAGTACGCAAGGATGCTATTTACATTCGGGGCTTTCTCTTCGTTTCCATCATGTTTGCGCAGATGCAAATGTACATATCATCACATCATTCATCAGCACGATCTTGTTGCGGCAAAGCCGAAGTAAAAACTGTGCAGATGGCCACCAGGCCCCAATTTTCAAACACACTAAAACAGCAANCACGACGGATGTCCGCAAGGGAAGAGGATTCTGACTTNNGCAGAAAGGTGTCACTTTTCAACTGCAAATGATATGACCCTGTAGAGACGCTACATAACCTTCCTAATTGCTAGC]


>consensus_1454#1 ATCCCGAGGTTAATGTAGAATATTGTTTGTCTTGTTTTTNTTTTTCTTTCTTTTTTTCTG TTTCACTCCGTAGTCTTTTCTCTGGTGTGTGTGTGTGTTTTGTAAGCCAAGAGCAATAGT TTTGGTTACCTATTTTCCACTATTTGTCGATACTCACTGTTAGAGGGGTTTTTTGCTGGT ATTTCAACACTTTTGCTCAATTTATGTTACGCTCTTCACATGGGACGGTAGAACTACTGG TGCTACCTACCAACGCCACACGGATAATGCCTTCTTTCTTATTAGATTTAACCAATCCAT TCAATTCAAACTACTCTTGGCCACAAGGAGGCACATGGCGCGTTCATTAAAAATTGGGAA AATCAGTACGCAAGGATGCTATTTACATTCGGGGCTTTCTCTTCGTTTCCATCATGTTTG CGCAGATGCAAATGTACATATCATCACATCATTCATCAGCACGATCTTGTTGCGGCAAAG CCGAAGTAAAAACTGTGCAGATGGCCACCAGGCCCCAATTTTCAAACACACTAAAACAGC AANCACGACGGATGTCCGCAAGGGAAGAGGATTCTGACTTNNGCAGAAAGGTGTCACTTT TCAACTGCAAATGATATGACCCTGTAGAGACGCTACATAACCTTCCTAATTGCTAGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1454#0      ------------------------------------------------------------
consensus_1454#1      ATCCCGAGGTTAATGTAGAATATTGTTTGTCTTGTTTTTNTTTTTCTTTCTTTTTTTCTG 60
                                                                                  

consensus_1454#0      ------------------------------------------------------------
consensus_1454#1      TTTCACTCCGTAGTCTTTTCTCTGGTGTGTGTGTGTGTTTTGTAAGCCAAGAGCAATAGT 120
                                                                                  

consensus_1454#0      ------------------------------------------------------------
consensus_1454#1      TTTGGTTACCTATTTTCCACTATTTGTCGATACTCACTGTTAGAGGGGTTTTTTGCTGGT 180
                                                                                  

consensus_1454#0      ---------------------------TACCCTCTTCACATGGGACGGTAGAACTACTGG 33
consensus_1454#1      ATTTCAACACTTTTGCTCAATTTATGTTACGCTCTTCACATGGGACGGTAGAACTACTGG 240
                                                 *** *****************************

consensus_1454#0      TGCTACCTATCAACGC-ACACGGATAATGCCTTCTTTCTTATTAGATTTAACCAATCCGT 92
consensus_1454#1      TGCTACCTACCAACGCCACACGGATAATGCCTTCTTTCTTATTAGATTTAACCAATCCAT 300
                      ********* ****** ***************************************** *

consensus_1454#0      TCAATTCAAACTACTTTTGGCCACAAGGAGGCATATGGTACGCGTATTAAAAAGAGGGAA 152
consensus_1454#1      TCAATTCAAACTACTCTTGGCCACAAGGAGGCACATGGCGCGTTCATTAAAAATTGGGAA 360
                      *************** ***************** ****  **   ********  *****

consensus_1454#0      AAACTTGTACGCAAGGATACTATGAATATTCGGGACTTTCTCTTCGTTTCCATCATGTTT 212
consensus_1454#1      AATCA-GTACGCAAGGATGCTATTTACATTCGGGGCTTTCTCTTCGTTTCCATCATGTTT 419
                      ** *  ************ ****  * ******* *************************

consensus_1454#0      GCG-AGATG-AAATGTACATATATAAATATTAT-----AGCACGATCTTGTTGCGG-AAA 264
consensus_1454#1      GCGCAGATGCAAATGTACATATCATCACATCATTCATCAGCACGATCTTGTTGCGGCAAA 479
                      *** ***** ************    * ** **     ****************** ***

consensus_1454#0      GCCGAAGTAAAA-CTGTGCAGATGGC-ACCAGGCCCCAATTTTCAAACACACTAAAA-AG 321
consensus_1454#1      GCCGAAGTAAAAACTGTGCAGATGGCCACCAGGCCCCAATTTTCAAACACACTAAAACAG 539
                      ************ ************* ****************************** **

consensus_1454#0      CAAAA--GAAGGATGTCCGCAAGG-AAGAGA--TTTGATTAGAG---AAAGGTGTTA-TT 372
consensus_1454#1      CAANCACGACGGATGTCCGCAAGGGAAGAGGATTCTGACTTNNGCAGAAAGGTGTCACTT 599
                      ***    ** ************** *****   * *** *   *   ******** * **

consensus_1454#0      TTCAACCTCAAATGATATGACCCTGTAGAGACGCTACATAACCTTCCTAATTGCTAGCAT 432
consensus_1454#1      TTCAACTGCAAATGATATGACCCTGTAGAGACGCTACATAACCTTCCTAATTGCTAGC-- 657
                      ******  **************************************************  

consensus_1454#0      TCTGTGGTGCTGTGGCGTTAGTCCTCTGTTAATTGAATTATTCCGGATCAACTGAGTTCG 492
consensus_1454#1      ------------------------------------------------------------
                                                                                  

consensus_1454#0      ATCTGTTCTGTCGGTTGACGCCAAGATCTGTGAACATGTTAGGCTGACCTTTAACTGATA 552
consensus_1454#1      ------------------------------------------------------------
                                                                                  

consensus_1454#0      TATCTAATCACTTTCCGTTGCAGTATCGTAACACCAGAAGCAACACACACACACAGCACC 612
consensus_1454#1      ------------------------------------------------------------
                                                                                  

consensus_1454#0      CTTACTCCTATTACGTTTCTTTGTTAGCACTATTATTACTAATTCTGCAGGCGCGCGCGC 672
consensus_1454#1      ------------------------------------------------------------
                                                                                  

consensus_1454#0      GCGAAATACATTTTTGTAGG 692
consensus_1454#1      --------------------
                                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)