These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1454#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [TACCCTCTTCACATGGGACGGTAGAACTACTGGTGCTACCTATCAACGCACACGGATAATGCCTTCTTTCTTATTAGATTTAACCAATCCGTTCAATTCAAACTACTTTTGGCCACAAGGAGGCATATGGTACGCGTATTAAAAAGAGGGAAAAACTTGTACGCAAGGATACTATGAATATTCGGGACTTTCTCTTCGTTTCCATCATGTTTGCGAGATGAAATGTACATATATAAATATTATAGCACGATCTTGTTGCGGAAAGCCGAAGTAAAACTGTGCAGATGGCACCAGGCCCCAATTTTCAAACACACTAAAAAGCAAAAGAAGGATGTCCGCAAGGAAGAGATTTGATTAGAGAAAGGTGTTATTTTCAACCTCAAATGATATGACCCTGTAGAGACGCTACATAACCTTCCTAATTGCTAGCATTCTGTGGTGCTGTGGCGTTAGTCCTCTGTTAATTGAATTATTCCGGATCAACTGAGTTCGATCTGTTCTGTCGGTTGACGCCAAGATCTGTGAACATGTTAGGCTGACCTTTAACTGATATATCTAATCACTTTCCGTTGCAGTATCGTAACACCAGAAGCAACACACACACACAGCACCCTTACTCCTATTACGTTTCTTTGTTAGCACTATTATTACTAATTCTGCAGGCGCGCGCGCGCGAAATACATTTTTGTAGG] [+] EMBL BX624702 [TACCCTCTTCACATGGGACGGTAGAACTACTGGTGCTACCTATCAACGCACACGGATAATGCCTTCTTTCTTATTAGATTTAACCAATCCGTTCAATTCAAACTACTTTTGGCCACAAGGAGGCATATGGTACGCGTATTAAAAAGAGGGAAAAACTTGTACGCAAGGATACTATGAATATTCGGGACTTTCTCTTCGTTTCCATCATGTTTGCGAGATGAAATGTACATATATAAATATTATAGCACGATCTTGTTGCGGAAAGCCGAAGTAAAACTGTGCAGATGGCACCAGGCCCCAATTTTCAAACACACTAAAAAGCAAAAGAAGGATGTCCGCAAGGAAGAGATTTGATTAGAGAAAGGTGTTATTTTCAACCTCAAATGATATGACCCTGTAGAGACGCTACATAACCTTCCTAATTGCTAGCATTCTGTGGTGCTGTGGCGTTAGTCCTCTGTTAATTGAATTATTCCGGATCAACTGAGTTCGATCTGTTCTGTCGGTTGACGCCAAGATCTGTGAACATGTTAGGCTGACCTTTAACTGATATATCTAATCACTTTCCGTTGCAGTATCGTAACACCAGAAGCAACACACACACACAGCACCCTTACTCCTATTACGTTTCTTTGTTAGCACTATTATTACTAATTCTGCAGGCGCGCGCGCGCGAAATACATTTTTGTAGG] consensusID : consensus_1454#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence [ATCCCGAGGTTAATGTAGAATATTGTTTGTCTTGTTTTTNTTTTTCTTTCTTTTTTTCTGTTTCACTCCGTAGTCTTTTCTCTGGTGTGTGTGTGTGTTTTGTAAGCCAAGAGCAATAGTTTTGGTTACCTATTTTCCACTATTTGTCGATACTCACTGTTAGAGGGGTTTTTTGCTGGTATTTCAACACTTTTGCTCAATTTATGTTACGCTCTTCACATGGGACGGTAGAACTACTGGTGCTACCTACCAACGCCACACGGATAATGCCTTCTTTCTTATTAGATTTAACCAATCCATTCAATTCAAACTACTCTTGGCCACAAGGAGGCACATGGCGCGTTCATTAAAAATTGGGAAAATCAGTACGCAAGGATGCTATTTACATTCGGGGCTTTCTCTTCGTTTCCATCATGTTTGCGCAGATGCAAATGTACATATCATCACATCATTCATCAGCACGATCTTGTTGCGGCAAAGCCGAAGTAAAAACTGTGCAGATGGCCACCAGGCCCCAATTTTCAAACACACTAAAACAGCAANCACGACGGATGTCCGCAAGGGAAGAGGATTCTGACTTNNGCAGAAAGGTGTCACTTTTCAACTGCAAATGATATGACCCTGTAGAGACGCTACATAACCTTCCTAATTGCTAGC] [+] EMBL AL692264 [ATCCCGAGGTTAATGTAGAATATTGTTTGTCTTGTTTTTNTTTTTCTTTCTTTTTTTCTGTTTCACTCCGTAGTCTTTTCTCTGGTGTGTGTGTGTGTTTTGTAAGCCAAGAGCAATAGTTTTGGTTACCTATTTTCCACTATTTGTCGATACTCACTGTTAGAGGGGTTTTTTGCTGGTATTTCAACACTTTTGCTCAATTTATGTTACGCTCTTCACATGGGACGGTAGAACTACTGGTGCTACCTACCAACGCCACACGGATAATGCCTTCTTTCTTATTAGATTTAACCAATCCATTCAATTCAAACTACTCTTGGCCACAAGGAGGCACATGGCGCGTTCATTAAAAATTGGGAAAATCAGTACGCAAGGATGCTATTTACATTCGGGGCTTTCTCTTCGTTTCCATCATGTTTGCGCAGATGCAAATGTACATATCATCACATCATTCATCAGCACGATCTTGTTGCGGCAAAGCCGAAGTAAAAACTGTGCAGATGGCCACCAGGCCCCAATTTTCAAACACACTAAAACAGCAANCACGACGGATGTCCGCAAGGGAAGAGGATTCTGACTTNNGCAGAAAGGTGTCACTTTTCAACTGCAAATGATATGACCCTGTAGAGACGCTACATAACCTTCCTAATTGCTAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1454#0 ------------------------------------------------------------ consensus_1454#1 ATCCCGAGGTTAATGTAGAATATTGTTTGTCTTGTTTTTNTTTTTCTTTCTTTTTTTCTG 60 consensus_1454#0 ------------------------------------------------------------ consensus_1454#1 TTTCACTCCGTAGTCTTTTCTCTGGTGTGTGTGTGTGTTTTGTAAGCCAAGAGCAATAGT 120 consensus_1454#0 ------------------------------------------------------------ consensus_1454#1 TTTGGTTACCTATTTTCCACTATTTGTCGATACTCACTGTTAGAGGGGTTTTTTGCTGGT 180 consensus_1454#0 ---------------------------TACCCTCTTCACATGGGACGGTAGAACTACTGG 33 consensus_1454#1 ATTTCAACACTTTTGCTCAATTTATGTTACGCTCTTCACATGGGACGGTAGAACTACTGG 240 *** ***************************** consensus_1454#0 TGCTACCTATCAACGC-ACACGGATAATGCCTTCTTTCTTATTAGATTTAACCAATCCGT 92 consensus_1454#1 TGCTACCTACCAACGCCACACGGATAATGCCTTCTTTCTTATTAGATTTAACCAATCCAT 300 ********* ****** ***************************************** * consensus_1454#0 TCAATTCAAACTACTTTTGGCCACAAGGAGGCATATGGTACGCGTATTAAAAAGAGGGAA 152 consensus_1454#1 TCAATTCAAACTACTCTTGGCCACAAGGAGGCACATGGCGCGTTCATTAAAAATTGGGAA 360 *************** ***************** **** ** ******** ***** consensus_1454#0 AAACTTGTACGCAAGGATACTATGAATATTCGGGACTTTCTCTTCGTTTCCATCATGTTT 212 consensus_1454#1 AATCA-GTACGCAAGGATGCTATTTACATTCGGGGCTTTCTCTTCGTTTCCATCATGTTT 419 ** * ************ **** * ******* ************************* consensus_1454#0 GCG-AGATG-AAATGTACATATATAAATATTAT-----AGCACGATCTTGTTGCGG-AAA 264 consensus_1454#1 GCGCAGATGCAAATGTACATATCATCACATCATTCATCAGCACGATCTTGTTGCGGCAAA 479 *** ***** ************ * ** ** ****************** *** consensus_1454#0 GCCGAAGTAAAA-CTGTGCAGATGGC-ACCAGGCCCCAATTTTCAAACACACTAAAA-AG 321 consensus_1454#1 GCCGAAGTAAAAACTGTGCAGATGGCCACCAGGCCCCAATTTTCAAACACACTAAAACAG 539 ************ ************* ****************************** ** consensus_1454#0 CAAAA--GAAGGATGTCCGCAAGG-AAGAGA--TTTGATTAGAG---AAAGGTGTTA-TT 372 consensus_1454#1 CAANCACGACGGATGTCCGCAAGGGAAGAGGATTCTGACTTNNGCAGAAAGGTGTCACTT 599 *** ** ************** ***** * *** * * ******** * ** consensus_1454#0 TTCAACCTCAAATGATATGACCCTGTAGAGACGCTACATAACCTTCCTAATTGCTAGCAT 432 consensus_1454#1 TTCAACTGCAAATGATATGACCCTGTAGAGACGCTACATAACCTTCCTAATTGCTAGC-- 657 ****** ************************************************** consensus_1454#0 TCTGTGGTGCTGTGGCGTTAGTCCTCTGTTAATTGAATTATTCCGGATCAACTGAGTTCG 492 consensus_1454#1 ------------------------------------------------------------ consensus_1454#0 ATCTGTTCTGTCGGTTGACGCCAAGATCTGTGAACATGTTAGGCTGACCTTTAACTGATA 552 consensus_1454#1 ------------------------------------------------------------ consensus_1454#0 TATCTAATCACTTTCCGTTGCAGTATCGTAACACCAGAAGCAACACACACACACAGCACC 612 consensus_1454#1 ------------------------------------------------------------ consensus_1454#0 CTTACTCCTATTACGTTTCTTTGTTAGCACTATTATTACTAATTCTGCAGGCGCGCGCGC 672 consensus_1454#1 ------------------------------------------------------------ consensus_1454#0 GCGAAATACATTTTTGTAGG 692 consensus_1454#1 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||