These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1456#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence [CCGACGAGAGAACACACGCCCGTAGCGTGCGGCGTCCGTAGCGCGCATCTCGTGTATTGCGGGGAGCTTACGGACTGTGGGATTTTTTATTTTTTTTTTAGTTGTGTGTGGTGTCTGTCTCCTCCTGGGCACTCTAGTGTACCTTACTGTGTGCGGTGCGTGTGTGAGCGGATTGCACAGAAGCGAGCTTCAAGTGCGATCTTGCGGGGTGCGATTCTCGCTCGAAAGAGAGAGAGAGAGAGAGAGAGGGAGAGGCAAAAGGAAGAAAGAACGAAAAAATGGCAACCGTACAAGTGCGAACAACGCTGAACGCTGCTGTGCCCTTAGTAAAACCTAACCTTGGCGAAAAAGATCGGCTCGCCTTCCGTGTGCGCGTGTGTGTTTGCGCTCCGCTACGATTGCTGTACCGTTCTGCTACAGACCACGGTTGACAAAAGGATGTGTTTTAGTGAACGATGGAAACAGATAACAAACAAAAAAAACTGATCCAACAGTTAAGTGAATCACGGGTTGCGGCGACGACGTTACTAACTGCGATGGCGGCAGCGGCGACGGCGGCGGCGAAAAAGAACCGAATTCTAAAGATGGCGCAGCGAAGGATGGATAATGGAGCGCTCGATCCAGCAGCTGCGGGAAATGGCGAAAACGTGC] [+] EMBL BM629903 [CCGACGAGAGAACACACGCCCGTAGCGTGCGGCGTCCGTAGCGCGCATCTCGTGTATTGCGGGGAGCTTACGGACTGTGGGATTTTTTATTTTTTTTTTAGTTGTGTGTGGTGTCTGTCTCCTCCTGGGCACTCTAGTGTACCTTACTGTGTGCGGTGCGTGTGTGAGCGGATTGCACAGAAGCGAGCTTCAAGTGCGATCTTGCGGGGTGCGATTCTCGCTCGAAAGAGAGAGAGAGAGAGAGAGAGGGAGAGGCAAAAGGAAGAAAGAACGAAAAAATGGCAACCGTACAAGTGCGAACAACGCTGAACGCTGCTGTGCCCTTAGTAAAACCTAACCTTGGCGAAAAAGATCGGCTCGCCTTCCGTGTGCGCGTGTGTGTTTGCGCTCCGCTACGATTGCTGTACCGTTCTGCTACAGACCACGGTTGACAAAAGGATGTGTTTTAGTGAACGATGGAAACAGATAACAAACAAAAAAAACTGATCCAACAGTTAAGTGAATCACGGGTTGCGGCGACGACGTTACTAACTGCGATGGCGGCAGCGGCGACGGCGGCGGCGAAAAAGAACCGAATTCTAAAGATGGCGCAGCGAAGGATGGATAATGGAGCGCTCGATCCAGCAGCTGCGGGAAATGGCGAAAACGTGC] consensusID : consensus_1456#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence [CCGAGCGTCTCGACGAGAGAACACACGCCCGTAGCGTGCGGCGTCCGTAGCGTGCATCTCGTGTATTGCGGGGAGCTTACGGACTGTGGGATTTTTTTTTTTTTTTTTAGTTGTGTGTGGTGTCTGGCTCCTCCTGGGCACTCTAGTGTACCTTACTGTGTGCGGTGCGTGTGTGAGCGGATTGCACAGAAGCGAGCTTCAAGTGCGATCTTGCGGGGTGCGATTCTCGCTCGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGGCAAAAGGAAGAAAGAACGAAAAAATGGCAACCGTACAAGTGCGAACAACGCTGAACGCTGCTGTGCCCTTAGTAAAACCTAACCTTGGCGAAAAAGATCGGCTCGCCTTCCGTGTGCGCGTGTGTGTTTGCGCTCCGCTACGATTGCTGCTACCGTTCTGCTACAGACCACGGTTGACAAAAGGATGTGTTTTAGTGAACGATGGAAACCGATAACAAAAAAAAAAAAAAACTGATCCAACAGTTAAGTGAATCACGGGTTGCGGGCGACGACGTTACTAAGTGCGATGGCGGCAGCGGCGACGGCGGCGGCGAAAAAGAAC] [+] EMBL BM610101 [CCGAGCGTCTCGACGAGAGAACACACGCCCGTAGCGTGCGGCGTCCGTAGCGTGCATCTCGTGTATTGCGGGGAGCTTACGGACTGTGGGATTTTTTTTTTTTTTTTTAGTTGTGTGTGGTGTCTGGCTCCTCCTGGGCACTCTAGTGTACCTTACTGTGTGCGGTGCGTGTGTGAGCGGATTGCACAGAAGCGAGCTTCAAGTGCGATCTTGCGGGGTGCGATTCTCGCTCGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGGCAAAAGGAAGAAAGAACGAAAAAATGGCAACCGTACAAGTGCGAACAACGCTGAACGCTGCTGTGCCCTTAGTAAAACCTAACCTTGGCGAAAAAGATCGGCTCGCCTTCCGTGTGCGCGTGTGTGTTTGCGCTCCGCTACGATTGCTGCTACCGTTCTGCTACAGACCACGGTTGACAAAAGGATGTGTTTTAGTGAACGATGGAAACCGATAACAAAAAAAAAAAAAAACTGATCCAACAGTTAAGTGAATCACGGGTTGCGGGCGACGACGTTACTAAGTGCGATGGCGGCAGCGGCGACGGCGGCGGCGAAAAAGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1456#0 ---------CCGACGAGAGAACACACGCCCGTAGCGTGCGGCGTCCGTAGCGCGCATCTC 51 consensus_1456#1 CCGAGCGTCTCGACGAGAGAACACACGCCCGTAGCGTGCGGCGTCCGTAGCGTGCATCTC 60 ****************************************** ******* consensus_1456#0 GTGTATTGCGGGGAGCTTACGGACTGTGGGATTTTTTATTTTTTTTTTAGTTGTGTGTGG 111 consensus_1456#1 GTGTATTGCGGGGAGCTTACGGACTGTGGGATTTTTTTTTTTTTTTTTAGTTGTGTGTGG 120 ************************************* ********************** consensus_1456#0 TGTCTGTCTCCTCCTGGGCACTCTAGTGTACCTTACTGTGTGCGGTGCGTGTGTGAGCGG 171 consensus_1456#1 TGTCTGGCTCCTCCTGGGCACTCTAGTGTACCTTACTGTGTGCGGTGCGTGTGTGAGCGG 180 ****** ***************************************************** consensus_1456#0 ATTGCACAGAAGCGAGCTTCAAGTGCGATCTTGCGGGGTGCGATTCTCGCTCGAAAGAGA 231 consensus_1456#1 ATTGCACAGAAGCGAGCTTCAAGTGCGATCTTGCGGGGTGCGATTCTCGCTCGAAAGAGA 240 ************************************************************ consensus_1456#0 GAGAGAGAGAGAGAGAG----------------------GGAGAGGCAAAAGGAAGAAAG 269 consensus_1456#1 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGGCAAAAGGAAGAAAG 300 ***************** ********************* consensus_1456#0 AACGAAAAAATGGCAACCGTACAAGTGCGAACAACGCTGAACGCTGCTGTGCCCTTAGTA 329 consensus_1456#1 AACGAAAAAATGGCAACCGTACAAGTGCGAACAACGCTGAACGCTGCTGTGCCCTTAGTA 360 ************************************************************ consensus_1456#0 AAACCTAACCTTGGCGAAAAAGATCGGCTCGCCTTCCGTGTGCGCGTGTGTGTTTGCGCT 389 consensus_1456#1 AAACCTAACCTTGGCGAAAAAGATCGGCTCGCCTTCCGTGTGCGCGTGTGTGTTTGCGCT 420 ************************************************************ consensus_1456#0 CCGCTACGATTGCTG-TACCGTTCTGCTACAGACCACGGTTGACAAAAGGATGTGTTTTA 448 consensus_1456#1 CCGCTACGATTGCTGCTACCGTTCTGCTACAGACCACGGTTGACAAAAGGATGTGTTTTA 480 *************** ******************************************** consensus_1456#0 GTGAACGATGGAAACAGATAACAAACAAAAAAAA---CTGATCCAACAGTTAAGTGAATC 505 consensus_1456#1 GTGAACGATGGAAACCGATAACAAAAAAAAAAAAAAACTGATCCAACAGTTAAGTGAATC 540 *************** ********* ******** *********************** consensus_1456#0 ACGGGTTGCGG-CGACGACGTTACTAACTGCGATGGCGGCAGCGGCGACGGCGGCGGCGA 564 consensus_1456#1 ACGGGTTGCGGGCGACGACGTTACTAAGTGCGATGGCGGCAGCGGCGACGGCGGCGGCGA 600 *********** *************** ******************************** consensus_1456#0 AAAAGAACCGAATTCTAAAGATGGCGCAGCGAAGGATGGATAATGGAGCGCTCGATCCAG 624 consensus_1456#1 AAAAGAAC---------------------------------------------------- 608 ******** consensus_1456#0 CAGCTGCGGGAAATGGCGAAAACGTGC 651 consensus_1456#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||