These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1458#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 809 fasta sequence [AGGCAGAATNCCGAGGTTATTGAGCGGATTATGACAAGGCGCAGCAACGAGATTCCAACCCGGGGAAAGCATCCAACGAGGAGACCGGTTGAGGGGATGTCCTATGACTTCCACCCCATTAAAAAAACGTCCTCGTTCCGCTAAATGTGTCTAAGCAATACGATTATGGNGGGCGATTAGCTCCATTCGTACTGTGGTTAACCACCGACTGTAAGCAGTGCGTGAGCTGCTTGCAACACTAACACACACACAACACATACAGAGCCAGTATTTGTGTATTTCCANCAAAAAAAAACAAACAAAATGCTGCCTTAAAACACATNCGCAGGGGGAAGGCCTGCAGGGCTACCTAAAGTGTTGCTTGCTATGCTTCATTAAATTACCAGCAGANAACTTATNTATTATTCCCAAACACACGCACACAGCCGCAAACACCACACAAAGACACCCCGGGTATAACCTCTTGGACACTTCATGGGNGCGGTGGTTTTACAACTNACTTACAAACCCTAAACAACNAAACTGGCTNNCCAACTTGGACCTTGAACGCANNNAAGCACACCCCCCNTTANCGCCACNGGTNCCTTNAACANCCGCCCCCATGTGTAGTAAACTTCCGCGCATTAAATAACNACGGAAAACACATTTTGGNACCNCGAGCCCCCGGNAAACGGAACANANATTTTCCCGCACACCCCCAAACACAACCACCNNTGGGCCCTANGAGCTTTCTGGCACACACCGTTGTACATTTCCATCAGCAACATANGNNTACAATTNAACCGACCACCAACCTNGNACGTCCATCA] [+] EMBL AL692295 [AGGCAGAATNCCGAGGTTATTGAGCGGATTATGACAAGGCGCAGCAACGAGATTCCAACCCGGGGAAAGCATCCAACGAGGAGACCGGTTGAGGGGATGTCCTATGACTTCCACCCCATTAAAAAAACGTCCTCGTTCCGCTAAATGTGTCTAAGCAATACGATTATGGNGGGCGATTAGCTCCATTCGTACTGTGGTTAACCACCGACTGTAAGCAGTGCGTGAGCTGCTTGCAACACTAACACACACACAACACATACAGAGCCAGTATTTGTGTATTTCCANCAAAAAAAAACAAACAAAATGCTGCCTTAAAACACATNCGCAGGGGGAAGGCCTGCAGGGCTACCTAAAGTGTTGCTTGCTATGCTTCATTAAATTACCAGCAGANAACTTATNTATTATTCCCAAACACACGCACACAGCCGCAAACACCACACAAAGACACCCCGGGTATAACCTCTTGGACACTTCATGGGNGCGGTGGTTTTACAACTNACTTACAAACCCTAAACAACNAAACTGGCTNNCCAACTTGGACCTTGAACGCANNNAAGCACACCCCCCNTTANCGCCACNGGTNCCTTNAACANCCGCCCCCATGTGTAGTAAACTTCCGCGCATTAAATAACNACGGAAAACACATTTTGGNACCNCGAGCCCCCGGNAAACGGAACANANATTTTCCCGCACACCCCCAAACACAACCACCNNTGGGCCCTANGAGCTTTCTGGCACACACCGTTGTACATTTCCATCAGCAACATANGNNTACAATTNAACCGACCACCAACCTNGNACGTCCATCA] consensusID : consensus_1458#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence [AGGCGCAAGCAAACGAGATTCCAACCCGGGGAAAGCATCCAACGCAGGAGACCGGTTGAGGGGATGTCCTATGACTTCCACCCCATTAAAAAAACGTCCTCGTTCCGCTAAATGTGTCTAAGCAATACGATTATGGGGGCGATTAGCTCCATTCGTACTGTGTTAACCACCGACTGTAAGCAGTGCGTGAGCTGCTTGCAACACTAACACACACACAACACATACAGAGCAGTATTTGTGTATTTAAAAAAAAAAAACAAACAAAATGCTGCTTAAAACACATCCGCAGGGGGAAGGCCTGCAGGGCTACCTAAAGTGTTGTTGCTATGTTCATTAAATTACAGCAGAAACTTATTTATTTTCCCAAAAAGCAAAGCGAAAACAAAAGCCCGTTACTTGAATTGGGTGTTAATATACACTACCACTGTACATGATGAGCAAACCTAGAGTCTAACCCTGTATCGTTTAAGAATTGAAGCGAGAATTCGAACAAAACTGCTAGTTGAACTTATTTTATGTATAAAAAATGATTATTTTGTTAGTTTCTTATTATTATTAATGNTATTATTATTATTATTAATGCGTTTCAATTGCGGCGCTATACTATGCATAGCGCGGCATACNCACACAAA] [+] EMBL BX623949 [AGGCGCAAGCAAACGAGATTCCAACCCGGGGAAAGCATCCAACGCAGGAGACCGGTTGAGGGGATGTCCTATGACTTCCACCCCATTAAAAAAACGTCCTCGTTCCGCTAAATGTGTCTAAGCAATACGATTATGGGGGCGATTAGCTCCATTCGTACTGTGTTAACCACCGACTGTAAGCAGTGCGTGAGCTGCTTGCAACACTAACACACACACAACACATACAGAGCAGTATTTGTGTATTTAAAAAAAAAAAACAAACAAAATGCTGCTTAAAACACATCCGCAGGGGGAAGGCCTGCAGGGCTACCTAAAGTGTTGTTGCTATGTTCATTAAATTACAGCAGAAACTTATTTATTTTCCCAAAAAGCAAAGCGAAAACAAAAGCCCGTTACTTGAATTGGGTGTTAATATACACTACCACTGTACATGATGAGCAAACCTAGAGTCTAACCCTGTATCGTTTAAGAATTGAAGCGAGAATTCGAACAAAACTGCTAGTTGAACTTATTTTATGTATAAAAAATGATTATTTTGTTAGTTTCTTATTATTATTAATGNTATTATTATTATTATTAATGCGTTTCAATTGCGGCGCTATACTATGCATAGCGCGGCATACNCACACAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1458#0 AGGCAGAATNCCGAGGTTATTGAGCGGATTATGACAAGGCGCAGC--AACGAGATTCCAA 58 consensus_1458#1 ------------------------------------AGGCGCAAGCAAACGAGATTCCAA 24 ******* ************* consensus_1458#0 CCCGGGGAAAGCATCCAACG-AGGAGACCGGTTGAGGGGATGTCCTATGACTTCCACCCC 117 consensus_1458#1 CCCGGGGAAAGCATCCAACGCAGGAGACCGGTTGAGGGGATGTCCTATGACTTCCACCCC 84 ******************** *************************************** consensus_1458#0 ATTAAAAAAACGTCCTCGTTCCGCTAAATGTGTCTAAGCAATACGATTATGGNGGGCGAT 177 consensus_1458#1 ATTAAAAAAACGTCCTCGTTCCGCTAAATGTGTCTAAGCAATACGATTATGGGGG-CGAT 143 **************************************************** ** **** consensus_1458#0 TAGCTCCATTCGTACTGTGGTTAACCACCGACTGTAAGCAGTGCGTGAGCTGCTTGCAAC 237 consensus_1458#1 TAGCTCCATTCGTACTGTG-TTAACCACCGACTGTAAGCAGTGCGTGAGCTGCTTGCAAC 202 ******************* **************************************** consensus_1458#0 ACTAACACACACACAACACATACAGAGCCAGTATTTGTGTATTTCCANCAAAAAAAAACA 297 consensus_1458#1 ACTAACACACACACAACACATACAGAGC-AGTATTTGTGTATTT--AAAAAAAAAAAACA 259 **************************** *************** * *********** consensus_1458#0 AACAAAATGCTGCCTTAAAACACATNCGCAGGGGGAAGGCCTGCAGGGCTACCTAAAGTG 357 consensus_1458#1 AACAAAATGCTGC-TTAAAACACATCCGCAGGGGGAAGGCCTGCAGGGCTACCTAAAGTG 318 ************* *********** ********************************** consensus_1458#0 TTGCTTGCTATGCTTCATTAAATTACCAGCAGANAACTTATNTATTATTCCCAAACACAC 417 consensus_1458#1 TTG-TTGCTATG-TTCATTAAATTAC-AGCAGAAA-CTTATTTATT-TTCCCAAAAAGCA 373 *** ******** ************* ****** * ***** **** ******** * consensus_1458#0 GCACACAGCCGCAAACACCACACAAAGACACCCCGGGTATAACCTCTTGGACACTTCATG 477 consensus_1458#1 AAGCGAAAACAAAAGCCCGTTACTTGAATTGGGTGTTAATATACACTACCACTGTACATG 433 * * * ** * * ** * * *** * ** ** * **** consensus_1458#0 GGNGCGGTGGTTTTACAACTNACTTACAAACCCTAAACAACNAAACTGGCTNNCCAACTT 537 consensus_1458#1 A-TGAGCAAACCTAGAGTCTAACCCTGTATCGTTTAAGAATTGAAGCGAGAATTCGAACA 492 * * * ** ** * * * ** ** ** * * * consensus_1458#0 GGACCTTGAACGCANNNAAGCACACCCCCCNTTANCGCCACNGGTNCCTTNAACANCCGC 597 consensus_1458#1 AAACTGCTAGTTGAACTTATTTTATGTATAAAAAATG--ATTATTTTGTTAGTTTCTTAT 550 ** * * * * * * * * ** consensus_1458#0 CCCCATGTGTAGTAAACTTCCGCGCATTAAATAACNACGGAAAACACATTTTGGNACCNC 657 consensus_1458#1 TATTATTAATGNTATTATTATTATTATTAATGCGTTTCAATTGCGGCGCTATACTATGCA 610 ** * ** ** ***** * * * * * consensus_1458#0 GAGCCCCCGGNAAACGGAACANANATTTTCCCGCACACCCCCAAACACAACCACCNNTGG 717 consensus_1458#1 TAGCGC--GGCATACNCA-CACAAA----------------------------------- 632 *** * ** * ** * ** * * consensus_1458#0 GCCCTANGAGCTTTCTGGCACACACCGTTGTACATTTCCATCAGCAACATANGNNTACAA 777 consensus_1458#1 ------------------------------------------------------------ consensus_1458#0 TTNAACCGACCACCAACCTNGNACGTCCATCA 809 consensus_1458#1 -------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||