cluster # 1462

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Anopheles gambiae
cluster # 1462 cluster # 1462 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1462#0 length = 868 sequences # 1

consensus_1462#1 length = 637 sequences # 1

consensusID : consensus_1462#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 868
fasta sequence

                              [AGAATNCCCGAGGTTACGCAAGAGCAATCCTCCAGTCCCACGGTGAAAGTTGTGATAAACTATGCCCAAATTAACCAATCGTACCGGAAATGCTTGGGGCATCATCCTGCTGGGGAAGGCGGTGTGGTGCTGGTGGGTCGAGCGGGGTTAAATTAATTTTGCCTAATGGAGTAGTAATCAAGAGGCCAGACTGGCGACGGATATAGGATACATCAAGTTCCCCACGCCCTCCTTAACCCTTATCCCCTTGTTCCATAAACTCTGATCTAAGCGGTAACCCAGACACATACGAACGGGGTTCGANGGAGCAATGCGCACAGCGGTACACAGCTGCTATCGCTGAGTCCGCTATGNTATAGGANCAGCACGTATCAGGGCACAACAGGCCACAGGTANAGACACAAGAACAGCCATGTGTGTGTGTCCAGTGTGTCGCAACTATATGTGGATCTTGTNTGCTCCCTATGCGGCANAGTAGNAATATGTAGAAGAACGGNNNNACTCCTCTCGAACCCCGCAACGCAAGCAAGAAAGCNAGNTATAGGTAAAGAGGAGAGTAGTAGACCCCTATACACTGGCTNTTGGAAGCGAAAAATNNGGAATCCTATGGCAANTANACCNAATCGATATCNATAACAATTATGGGACAATACTAATTTNNTACAANACGAAAANAGGTATAACNAAAATAANTNGGTATAATGANACATCCAANCAAACCTCAACCCCTTATCAATACANTTAATCCGGCACAANAGTACCNGACAAAGTNGTACCGACCCCAACCGCCCCCACCNCCTAACCTAATTCGGGNNGGTACGAAACTATAACAAGACCAACACAACCTGGTGNTACCCGTCAGAGNCAC]

[+] EMBL AL692313             [AGAATNCCCGAGGTTACGCAAGAGCAATCCTCCAGTCCCACGGTGAAAGTTGTGATAAACTATGCCCAAATTAACCAATCGTACCGGAAATGCTTGGGGCATCATCCTGCTGGGGAAGGCGGTGTGGTGCTGGTGGGTCGAGCGGGGTTAAATTAATTTTGCCTAATGGAGTAGTAATCAAGAGGCCAGACTGGCGACGGATATAGGATACATCAAGTTCCCCACGCCCTCCTTAACCCTTATCCCCTTGTTCCATAAACTCTGATCTAAGCGGTAACCCAGACACATACGAACGGGGTTCGANGGAGCAATGCGCACAGCGGTACACAGCTGCTATCGCTGAGTCCGCTATGNTATAGGANCAGCACGTATCAGGGCACAACAGGCCACAGGTANAGACACAAGAACAGCCATGTGTGTGTGTCCAGTGTGTCGCAACTATATGTGGATCTTGTNTGCTCCCTATGCGGCANAGTAGNAATATGTAGAAGAACGGNNNNACTCCTCTCGAACCCCGCAACGCAAGCAAGAAAGCNAGNTATAGGTAAAGAGGAGAGTAGTAGACCCCTATACACTGGCTNTTGGAAGCGAAAAATNNGGAATCCTATGGCAANTANACCNAATCGATATCNATAACAATTATGGGACAATACTAATTTNNTACAANACGAAAANAGGTATAACNAAAATAANTNGGTATAATGANACATCCAANCAAACCTCAACCCCTTATCAATACANTTAATCCGGCACAANAGTACCNGACAAAGTNGTACCGACCCCAACCGCCCCCACCNCCTAACCTAATTCGGGNNGGTACGAAACTATAACAAGACCAACACAACCTGGTGNTACCCGTCAGAGNCAC]




>consensus_1462#0
AGAATNCCCGAGGTTACGCAAGAGCAATCCTCCAGTCCCACGGTGAAAGTTGTGATAAAC
TATGCCCAAATTAACCAATCGTACCGGAAATGCTTGGGGCATCATCCTGCTGGGGAAGGC
GGTGTGGTGCTGGTGGGTCGAGCGGGGTTAAATTAATTTTGCCTAATGGAGTAGTAATCA
AGAGGCCAGACTGGCGACGGATATAGGATACATCAAGTTCCCCACGCCCTCCTTAACCCT
TATCCCCTTGTTCCATAAACTCTGATCTAAGCGGTAACCCAGACACATACGAACGGGGTT
CGANGGAGCAATGCGCACAGCGGTACACAGCTGCTATCGCTGAGTCCGCTATGNTATAGG
ANCAGCACGTATCAGGGCACAACAGGCCACAGGTANAGACACAAGAACAGCCATGTGTGT
GTGTCCAGTGTGTCGCAACTATATGTGGATCTTGTNTGCTCCCTATGCGGCANAGTAGNA
ATATGTAGAAGAACGGNNNNACTCCTCTCGAACCCCGCAACGCAAGCAAGAAAGCNAGNT
ATAGGTAAAGAGGAGAGTAGTAGACCCCTATACACTGGCTNTTGGAAGCGAAAAATNNGG
AATCCTATGGCAANTANACCNAATCGATATCNATAACAATTATGGGACAATACTAATTTN
NTACAANACGAAAANAGGTATAACNAAAATAANTNGGTATAATGANACATCCAANCAAAC
CTCAACCCCTTATCAATACANTTAATCCGGCACAANAGTACCNGACAAAGTNGTACCGAC
CCCAACCGCCCCCACCNCCTAACCTAATTCGGGNNGGTACGAAACTATAACAAGACCAAC
ACAACCTGGTGNTACCCGTCAGAGNCAC

consensusID : consensus_1462#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 637
fasta sequence

                              [CGCACTTTCTCCCTCTCTTTAACGAAACAAAAAAAAAAACCCTCGAGGAAAATCGATTGTGATGTATCTATTGCGAAGTGGTCAGCGATGGCGATTGCGATTTTTCCACATTCTCACGAAGCTGGGAAATGGAGCTGATGTGGATAGATCTGCTGGCCGCTTCGCACAACACACTGTTTCGTCCCTAGACGTTGCCTCTCCACCTGACTGATGATGATGATGATGATGATGGTTAAAAGTTAATCTTACATATTTATAGCAGCACTATGCATTCTCTTCCTCTCTTACCCCCCATCCCCCCCCCTCCTTACCCCTTTCCCCTTGTTCCATAAACTCTGATCTAAGCGGTAACCCCAGACCACCATACCGAACGGGGTTCGAGGGAGAATGCGAAGCGGTACAAGCTGTTCGCTGGTCCGCTTGTTAGGAAAGACGTTAGGAAAGGCACGGTAAAGCAAAGAACAGAATGTGTGTGTGTCCAGTGTGTCGAACTTTGTTGGATCTTGTTGCTCCCTTGCGGCAAGTGGATTGTGAGAAGGAAACTCCTTCGACAAGAAGAAGAAGAAGAAGTATTGGTAAAGAGGAGGTGTGACCCCTTTCACTGGTTGGAAGCGAAAATTGAATCCTATGCAAATAC]

[+] EMBL BX607991             [CGCACTTTCTCCCTCTCTTTAACGAAACAAAAAAAAAAACCCTCGAGGAAAATCGATTGTGATGTATCTATTGCGAAGTGGTCAGCGATGGCGATTGCGATTTTTCCACATTCTCACGAAGCTGGGAAATGGAGCTGATGTGGATAGATCTGCTGGCCGCTTCGCACAACACACTGTTTCGTCCCTAGACGTTGCCTCTCCACCTGACTGATGATGATGATGATGATGATGGTTAAAAGTTAATCTTACATATTTATAGCAGCACTATGCATTCTCTTCCTCTCTTACCCCCCATCCCCCCCCCTCCTTACCCCTTTCCCCTTGTTCCATAAACTCTGATCTAAGCGGTAACCCCAGACCACCATACCGAACGGGGTTCGAGGGAGAATGCGAAGCGGTACAAGCTGTTCGCTGGTCCGCTTGTTAGGAAAGACGTTAGGAAAGGCACGGTAAAGCAAAGAACAGAATGTGTGTGTGTCCAGTGTGTCGAACTTTGTTGGATCTTGTTGCTCCCTTGCGGCAAGTGGATTGTGAGAAGGAAACTCCTTCGACAAGAAGAAGAAGAAGAAGTATTGGTAAAGAGGAGGTGTGACCCCTTTCACTGGTTGGAAGCGAAAATTGAATCCTATGCAAATAC]




>consensus_1462#1
CGCACTTTCTCCCTCTCTTTAACGAAACAAAAAAAAAAACCCTCGAGGAAAATCGATTGT
GATGTATCTATTGCGAAGTGGTCAGCGATGGCGATTGCGATTTTTCCACATTCTCACGAA
GCTGGGAAATGGAGCTGATGTGGATAGATCTGCTGGCCGCTTCGCACAACACACTGTTTC
GTCCCTAGACGTTGCCTCTCCACCTGACTGATGATGATGATGATGATGATGGTTAAAAGT
TAATCTTACATATTTATAGCAGCACTATGCATTCTCTTCCTCTCTTACCCCCCATCCCCC
CCCCTCCTTACCCCTTTCCCCTTGTTCCATAAACTCTGATCTAAGCGGTAACCCCAGACC
ACCATACCGAACGGGGTTCGAGGGAGAATGCGAAGCGGTACAAGCTGTTCGCTGGTCCGC
TTGTTAGGAAAGACGTTAGGAAAGGCACGGTAAAGCAAAGAACAGAATGTGTGTGTGTCC
AGTGTGTCGAACTTTGTTGGATCTTGTTGCTCCCTTGCGGCAAGTGGATTGTGAGAAGGA
AACTCCTTCGACAAGAAGAAGAAGAAGAAGTATTGGTAAAGAGGAGGTGTGACCCCTTTC
ACTGGTTGGAAGCGAAAATTGAATCCTATGCAAATAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1462#0      ------------------------------------------------------------
consensus_1462#1      CGCACTTTCTCCCTCTCTTTAACGAAACAAAAAAAAAAACCCTCGAGGAAAATCGATTGT 60
                                                                                  

consensus_1462#0      --------------AGAATNCCCGAGGTTACGCAAGAGCAATCCTCCAGTCCCACGGTGA 46
consensus_1462#1      GATGTATCTATTGCGAAGTGGTCAGCGATG-GCGATTGCGATTTTTCCACATTCTCACGA 119
                                      * *   *   * *  ** *  ** **  * *           **

consensus_1462#0      AAGTTGTGATAAACTATGCCCAAATTAACCAATCGTACCGGAAATGCTTGGGGCATCATC 106
consensus_1462#1      AGCT---GGGAAATGGAGCTGATGTGGATAGATC-TGCTGGC--CGCTTCGCACAACACA 173
                      *  *   *  ***    **  *  *  *   *** * * **    **** *  ** **  

consensus_1462#0      CTGCTGGGGA---AGGCGGTGTGGTGCTGGTGGGTCGAGCGGGGTTAAATTAATTTTGCC 163
consensus_1462#1      CTGTTTCGTCCCTAGACGTTGCCTCTCCACCTGACTGATGATGATGATGATGATGATGGT 233
                      *** *  *     ** ** **     *     *   **    * * *   * **  **  

consensus_1462#0      TAATGGAGTAGTAATCAAGAGGCCAGACTGGCGACGGATATAGGATACATCAAGTTCCCC 223
consensus_1462#1      TAA--AAGTTAATCTTACATATTTATAGCAGCACTATGCATTCTCTTCCTCTCTTACCCC 291
                      ***   ***     * *       * *   **       **    * * **   * ****

consensus_1462#0      ACGCCCTCCT------TAACCCTTATCCCCTTGTTCCATAAACTCTGATCTAAGCGGTAA 277
consensus_1462#1      CCATCCCCCCCCCTCCTTACCCCTTTCCCCTTGTTCCATAAACTCTGATCTAAGCGGTAA 351
                       *  ** **       * **** * ***********************************

consensus_1462#0      CCC-AGACA--CATAC-GAACGGGGTTCGANGGAGCAATGCGCACAGCGGTACACAGCTG 333
consensus_1462#1      CCCCAGACCACCATACCGAACGGGGTTCGAGGGAG-AATGCGA--AGCGGTACA-AGCTG 407
                      *** ****   ***** ************* **** ******   ********* *****

consensus_1462#0      CTATCGCTGAGTCCGCTATGNTATAGGANCAGCACGTATCAGGGCACAACAGGCCACAGG 393
consensus_1462#1      T--TCGCTG-GTCCGCT-TGTTA--GGAAAGACGTTAGGAAAGGCAC-----------GG 450
                         ****** ******* ** **  ***    *       * *****           **

consensus_1462#0      TANAGACACAAGAACAGCCATGTGTGTGTGTCCAGTGTGTCGCAACTATATGTGGATCTT 453
consensus_1462#1      TAAAG-CA-AAGAACAGA-ATGTGTGTGTGTCCAGTGTGTCG-AACTTTGT-TGGATCTT 505
                      ** ** ** ********  *********************** **** * * ********

consensus_1462#0      GTNTGCTCCCTATGCGGCANAGTAGNAATATGTAGAAGAACGGNNNNACTCCTCTCGAAC 513
consensus_1462#1      GTT-GCTCCCT-TGCGGCAAGT--GGATTGTG-AGAAG------GAAACTCCTT------ 548
                      **  ******* *******     * * * ** *****         ******       

consensus_1462#0      CCCGCAACGCAAGCAAGAAAGCNAGNTATAGGTAAAGAGGAGAGTAGTAGACCCCTATAC 573
consensus_1462#1      ----CGACAAGAAGAAGAAGAAGAAGTATTGGTAAAGAGGAG----GTGTGACCCCTTTC 600
                          * **   *  *****    *  *** ************    **    ***  * *

consensus_1462#0      ACTGGCTNTTGGAAGCGAAAAATNNGGAATCCTATGGCAANTANACCNAATCGATATCNA 633
consensus_1462#1      ACTGG---TTGGAAGCGAAAATT---GAATCCTATG-CAAATAC---------------- 637
                      *****   ************* *   ********** *** **                 

consensus_1462#0      TAACAATTATGGGACAATACTAATTTNNTACAANACGAAAANAGGTATAACNAAAATAAN 693
consensus_1462#1      ------------------------------------------------------------
                                                                                  

consensus_1462#0      TNGGTATAATGANACATCCAANCAAACCTCAACCCCTTATCAATACANTTAATCCGGCAC 753
consensus_1462#1      ------------------------------------------------------------
                                                                                  

consensus_1462#0      AANAGTACCNGACAAAGTNGTACCGACCCCAACCGCCCCCACCNCCTAACCTAATTCGGG 813
consensus_1462#1      ------------------------------------------------------------
                                                                                  

consensus_1462#0      NNGGTACGAAACTATAACAAGACCAACACAACCTGGTGNTACCCGTCAGAGNCAC 868
consensus_1462#1      -------------------------------------------------------