These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1462#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 868 fasta sequence [AGAATNCCCGAGGTTACGCAAGAGCAATCCTCCAGTCCCACGGTGAAAGTTGTGATAAACTATGCCCAAATTAACCAATCGTACCGGAAATGCTTGGGGCATCATCCTGCTGGGGAAGGCGGTGTGGTGCTGGTGGGTCGAGCGGGGTTAAATTAATTTTGCCTAATGGAGTAGTAATCAAGAGGCCAGACTGGCGACGGATATAGGATACATCAAGTTCCCCACGCCCTCCTTAACCCTTATCCCCTTGTTCCATAAACTCTGATCTAAGCGGTAACCCAGACACATACGAACGGGGTTCGANGGAGCAATGCGCACAGCGGTACACAGCTGCTATCGCTGAGTCCGCTATGNTATAGGANCAGCACGTATCAGGGCACAACAGGCCACAGGTANAGACACAAGAACAGCCATGTGTGTGTGTCCAGTGTGTCGCAACTATATGTGGATCTTGTNTGCTCCCTATGCGGCANAGTAGNAATATGTAGAAGAACGGNNNNACTCCTCTCGAACCCCGCAACGCAAGCAAGAAAGCNAGNTATAGGTAAAGAGGAGAGTAGTAGACCCCTATACACTGGCTNTTGGAAGCGAAAAATNNGGAATCCTATGGCAANTANACCNAATCGATATCNATAACAATTATGGGACAATACTAATTTNNTACAANACGAAAANAGGTATAACNAAAATAANTNGGTATAATGANACATCCAANCAAACCTCAACCCCTTATCAATACANTTAATCCGGCACAANAGTACCNGACAAAGTNGTACCGACCCCAACCGCCCCCACCNCCTAACCTAATTCGGGNNGGTACGAAACTATAACAAGACCAACACAACCTGGTGNTACCCGTCAGAGNCAC] [+] EMBL AL692313 [AGAATNCCCGAGGTTACGCAAGAGCAATCCTCCAGTCCCACGGTGAAAGTTGTGATAAACTATGCCCAAATTAACCAATCGTACCGGAAATGCTTGGGGCATCATCCTGCTGGGGAAGGCGGTGTGGTGCTGGTGGGTCGAGCGGGGTTAAATTAATTTTGCCTAATGGAGTAGTAATCAAGAGGCCAGACTGGCGACGGATATAGGATACATCAAGTTCCCCACGCCCTCCTTAACCCTTATCCCCTTGTTCCATAAACTCTGATCTAAGCGGTAACCCAGACACATACGAACGGGGTTCGANGGAGCAATGCGCACAGCGGTACACAGCTGCTATCGCTGAGTCCGCTATGNTATAGGANCAGCACGTATCAGGGCACAACAGGCCACAGGTANAGACACAAGAACAGCCATGTGTGTGTGTCCAGTGTGTCGCAACTATATGTGGATCTTGTNTGCTCCCTATGCGGCANAGTAGNAATATGTAGAAGAACGGNNNNACTCCTCTCGAACCCCGCAACGCAAGCAAGAAAGCNAGNTATAGGTAAAGAGGAGAGTAGTAGACCCCTATACACTGGCTNTTGGAAGCGAAAAATNNGGAATCCTATGGCAANTANACCNAATCGATATCNATAACAATTATGGGACAATACTAATTTNNTACAANACGAAAANAGGTATAACNAAAATAANTNGGTATAATGANACATCCAANCAAACCTCAACCCCTTATCAATACANTTAATCCGGCACAANAGTACCNGACAAAGTNGTACCGACCCCAACCGCCCCCACCNCCTAACCTAATTCGGGNNGGTACGAAACTATAACAAGACCAACACAACCTGGTGNTACCCGTCAGAGNCAC] consensusID : consensus_1462#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence [CGCACTTTCTCCCTCTCTTTAACGAAACAAAAAAAAAAACCCTCGAGGAAAATCGATTGTGATGTATCTATTGCGAAGTGGTCAGCGATGGCGATTGCGATTTTTCCACATTCTCACGAAGCTGGGAAATGGAGCTGATGTGGATAGATCTGCTGGCCGCTTCGCACAACACACTGTTTCGTCCCTAGACGTTGCCTCTCCACCTGACTGATGATGATGATGATGATGATGGTTAAAAGTTAATCTTACATATTTATAGCAGCACTATGCATTCTCTTCCTCTCTTACCCCCCATCCCCCCCCCTCCTTACCCCTTTCCCCTTGTTCCATAAACTCTGATCTAAGCGGTAACCCCAGACCACCATACCGAACGGGGTTCGAGGGAGAATGCGAAGCGGTACAAGCTGTTCGCTGGTCCGCTTGTTAGGAAAGACGTTAGGAAAGGCACGGTAAAGCAAAGAACAGAATGTGTGTGTGTCCAGTGTGTCGAACTTTGTTGGATCTTGTTGCTCCCTTGCGGCAAGTGGATTGTGAGAAGGAAACTCCTTCGACAAGAAGAAGAAGAAGAAGTATTGGTAAAGAGGAGGTGTGACCCCTTTCACTGGTTGGAAGCGAAAATTGAATCCTATGCAAATAC] [+] EMBL BX607991 [CGCACTTTCTCCCTCTCTTTAACGAAACAAAAAAAAAAACCCTCGAGGAAAATCGATTGTGATGTATCTATTGCGAAGTGGTCAGCGATGGCGATTGCGATTTTTCCACATTCTCACGAAGCTGGGAAATGGAGCTGATGTGGATAGATCTGCTGGCCGCTTCGCACAACACACTGTTTCGTCCCTAGACGTTGCCTCTCCACCTGACTGATGATGATGATGATGATGATGGTTAAAAGTTAATCTTACATATTTATAGCAGCACTATGCATTCTCTTCCTCTCTTACCCCCCATCCCCCCCCCTCCTTACCCCTTTCCCCTTGTTCCATAAACTCTGATCTAAGCGGTAACCCCAGACCACCATACCGAACGGGGTTCGAGGGAGAATGCGAAGCGGTACAAGCTGTTCGCTGGTCCGCTTGTTAGGAAAGACGTTAGGAAAGGCACGGTAAAGCAAAGAACAGAATGTGTGTGTGTCCAGTGTGTCGAACTTTGTTGGATCTTGTTGCTCCCTTGCGGCAAGTGGATTGTGAGAAGGAAACTCCTTCGACAAGAAGAAGAAGAAGAAGTATTGGTAAAGAGGAGGTGTGACCCCTTTCACTGGTTGGAAGCGAAAATTGAATCCTATGCAAATAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1462#0 ------------------------------------------------------------ consensus_1462#1 CGCACTTTCTCCCTCTCTTTAACGAAACAAAAAAAAAAACCCTCGAGGAAAATCGATTGT 60 consensus_1462#0 --------------AGAATNCCCGAGGTTACGCAAGAGCAATCCTCCAGTCCCACGGTGA 46 consensus_1462#1 GATGTATCTATTGCGAAGTGGTCAGCGATG-GCGATTGCGATTTTTCCACATTCTCACGA 119 * * * * * ** * ** ** * * ** consensus_1462#0 AAGTTGTGATAAACTATGCCCAAATTAACCAATCGTACCGGAAATGCTTGGGGCATCATC 106 consensus_1462#1 AGCT---GGGAAATGGAGCTGATGTGGATAGATC-TGCTGGC--CGCTTCGCACAACACA 173 * * * *** ** * * * *** * * ** **** * ** ** consensus_1462#0 CTGCTGGGGA---AGGCGGTGTGGTGCTGGTGGGTCGAGCGGGGTTAAATTAATTTTGCC 163 consensus_1462#1 CTGTTTCGTCCCTAGACGTTGCCTCTCCACCTGACTGATGATGATGATGATGATGATGGT 233 *** * * ** ** ** * * ** * * * * ** ** consensus_1462#0 TAATGGAGTAGTAATCAAGAGGCCAGACTGGCGACGGATATAGGATACATCAAGTTCCCC 223 consensus_1462#1 TAA--AAGTTAATCTTACATATTTATAGCAGCACTATGCATTCTCTTCCTCTCTTACCCC 291 *** *** * * * * ** ** * * ** * **** consensus_1462#0 ACGCCCTCCT------TAACCCTTATCCCCTTGTTCCATAAACTCTGATCTAAGCGGTAA 277 consensus_1462#1 CCATCCCCCCCCCTCCTTACCCCTTTCCCCTTGTTCCATAAACTCTGATCTAAGCGGTAA 351 * ** ** * **** * *********************************** consensus_1462#0 CCC-AGACA--CATAC-GAACGGGGTTCGANGGAGCAATGCGCACAGCGGTACACAGCTG 333 consensus_1462#1 CCCCAGACCACCATACCGAACGGGGTTCGAGGGAG-AATGCGA--AGCGGTACA-AGCTG 407 *** **** ***** ************* **** ****** ********* ***** consensus_1462#0 CTATCGCTGAGTCCGCTATGNTATAGGANCAGCACGTATCAGGGCACAACAGGCCACAGG 393 consensus_1462#1 T--TCGCTG-GTCCGCT-TGTTA--GGAAAGACGTTAGGAAAGGCAC-----------GG 450 ****** ******* ** ** *** * * ***** ** consensus_1462#0 TANAGACACAAGAACAGCCATGTGTGTGTGTCCAGTGTGTCGCAACTATATGTGGATCTT 453 consensus_1462#1 TAAAG-CA-AAGAACAGA-ATGTGTGTGTGTCCAGTGTGTCG-AACTTTGT-TGGATCTT 505 ** ** ** ******** *********************** **** * * ******** consensus_1462#0 GTNTGCTCCCTATGCGGCANAGTAGNAATATGTAGAAGAACGGNNNNACTCCTCTCGAAC 513 consensus_1462#1 GTT-GCTCCCT-TGCGGCAAGT--GGATTGTG-AGAAG------GAAACTCCTT------ 548 ** ******* ******* * * * ** ***** ****** consensus_1462#0 CCCGCAACGCAAGCAAGAAAGCNAGNTATAGGTAAAGAGGAGAGTAGTAGACCCCTATAC 573 consensus_1462#1 ----CGACAAGAAGAAGAAGAAGAAGTATTGGTAAAGAGGAG----GTGTGACCCCTTTC 600 * ** * ***** * *** ************ ** *** * * consensus_1462#0 ACTGGCTNTTGGAAGCGAAAAATNNGGAATCCTATGGCAANTANACCNAATCGATATCNA 633 consensus_1462#1 ACTGG---TTGGAAGCGAAAATT---GAATCCTATG-CAAATAC---------------- 637 ***** ************* * ********** *** ** consensus_1462#0 TAACAATTATGGGACAATACTAATTTNNTACAANACGAAAANAGGTATAACNAAAATAAN 693 consensus_1462#1 ------------------------------------------------------------ consensus_1462#0 TNGGTATAATGANACATCCAANCAAACCTCAACCCCTTATCAATACANTTAATCCGGCAC 753 consensus_1462#1 ------------------------------------------------------------ consensus_1462#0 AANAGTACCNGACAAAGTNGTACCGACCCCAACCGCCCCCACCNCCTAACCTAATTCGGG 813 consensus_1462#1 ------------------------------------------------------------ consensus_1462#0 NNGGTACGAAACTATAACAAGACCAACACAACCTGGTGNTACCCGTCAGAGNCAC 868 consensus_1462#1 ------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||