These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1469#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 746 fasta sequence [CAGATCCCCGNGGTTAAGTGTAGATACACACAAGGGCCGCAACATTTACACGCAAAACGATTACGTTTGATTTTCCTTCCCCGGGGAAAGCAAAAAACAATACACAGCGACTTGGGTGTTGTATAATCTTTCCATAGTGCTTTTCTTATGAACCCTTCATATGTAGGCATATTTACAAATGCAAATTAAACCCGTAATAGATGCAACACTAACGCATTTAAGTGAACGTGTGAGTGTGTGTCGTAATATATACTCGGGGGGGTGATGGCATTANACANAGGTTCGTGGACAGAGCTGGCCGCACCAAACCATAGTGGGGCACACAGCAGACCACCGATGATGGTAGCGCAGTACATCCAATTACGCATCGAAGAACATGTATTAGTGCAGCGTTTGTGTGATGATGCTGTGCAANATGACACACATACAGAGATCCACAAAATGAACTGCCTCTANAACAGTAAGCTGANGACGCGCATTATCAACATGTAATATCACTTGCATAGCTNCACACGGTCTACCCCCTATGGATGGACATNCTACAATATCAGGATCATCTACCCCTTAAAATTTTAACAAACAACCTATGGGTTTGGCCAACGCGTAGGATGTNGGTAGGATTGGCCGGCTTGATGGTTGGAGAGAGCGGGGAAACAACCCCAAAACATAACACACTGGGCACCCACCCCGNCAGGACAACANACAAACGGCACGCAAAAACAACCGGACTACATTTTCCCGGAACN] [+] EMBL AL692328 [CAGATCCCCGNGGTTAAGTGTAGATACACACAAGGGCCGCAACATTTACACGCAAAACGATTACGTTTGATTTTCCTTCCCCGGGGAAAGCAAAAAACAATACACAGCGACTTGGGTGTTGTATAATCTTTCCATAGTGCTTTTCTTATGAACCCTTCATATGTAGGCATATTTACAAATGCAAATTAAACCCGTAATAGATGCAACACTAACGCATTTAAGTGAACGTGTGAGTGTGTGTCGTAATATATACTCGGGGGGGTGATGGCATTANACANAGGTTCGTGGACAGAGCTGGCCGCACCAAACCATAGTGGGGCACACAGCAGACCACCGATGATGGTAGCGCAGTACATCCAATTACGCATCGAAGAACATGTATTAGTGCAGCGTTTGTGTGATGATGCTGTGCAANATGACACACATACAGAGATCCACAAAATGAACTGCCTCTANAACAGTAAGCTGANGACGCGCATTATCAACATGTAATATCACTTGCATAGCTNCACACGGTCTACCCCCTATGGATGGACATNCTACAATATCAGGATCATCTACCCCTTAAAATTTTAACAAACAACCTATGGGTTTGGCCAACGCGTAGGATGTNGGTAGGATTGGCCGGCTTGATGGTTGGAGAGAGCGGGGAAACAACCCCAAAACATAACACACTGGGCACCCACCCCGNCAGGACAACANACAAACGGCACGCAAAAACAACCGGACTACATTTTCCCGGAACN] consensusID : consensus_1469#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence [CCGCGCATGACGCTCTAAACCGGAATGTGAAGGCTTCGTGACAGTTGTTTGAAGCAAGAATAGTGTTAATCCTTGCCTAAATTGCTAACATTACAATTTCCTATCTGCTGCACCAGGTGCGCTTTCGCAATTTATCTTCAACCGTTTGCACCTATTTATGACATTGTGTGGCATGCGTGCGAGCGGAGTCGTTTGCTCTATTCTATGCTTGAAAATGGACTATTTTTCTTATGTTACAAATAATGATTTGTTTATTTAGTTTTTCGTACATGTCGCAAATGATTTCTTTTTTAATTTAAAACTGAAGGAAACTGAAATGTATCTTTCCCTACCTGTACGCTTTTCGAGTCGGTTTAAATGTATAATATGGAATTTATCCGATGAAAGCATAAAACCCGAATAAGTGGCAGGATTACAAATTGAAGGGGATCCTCTGTCGCATGAAGTGTAGATACACACAAGGGCCGCAACATTTACACGCAAAACGATTACGTTTGATATTCCTTCCCCGGGGAAAGCAAAAAACAATACACAGCGCTTGGGTGTTGTATAATCTTTCCATAGTGCTTTTCTTATGAACCCTTCAGTATGTAGGATATTTACAAATGAAATTAAATCCGTAATAGATGAAACTAACGCATTTTGTGAACGTGTGAGTGTGTGTTGTTTATTACTCGG] [+] EMBL BM631648 [CCGCGCATGACGCTCTAAACCGGAATGTGAAGGCTTCGTGACAGTTGTTTGAAGCAAGAATAGTGTTAATCCTTGCCTAAATTGCTAACATTACAATTTCCTATCTGCTGCACCAGGTGCGCTTTCGCAATTTATCTTCAACCGTTTGCACCTATTTATGACATTGTGTGGCATGCGTGCGAGCGGAGTCGTTTGCTCTATTCTATGCTTGAAAATGGACTATTTTTCTTATGTTACAAATAATGATTTGTTTATTTAGTTTTTCGTACATGTCGCAAATGATTTCTTTTTTAATTTAAAACTGAAGGAAACTGAAATGTATCTTTCCCTACCTGTACGCTTTTCGAGTCGGTTTAAATGTATAATATGGAATTTATCCGATGAAAGCATAAAACCCGAATAAGTGGCAGGATTACAAATTGAAGGGGATCCTCTGTCGCATGAAGTGTAGATACACACAAGGGCCGCAACATTTACACGCAAAACGATTACGTTTGATATTCCTTCCCCGGGGAAAGCAAAAAACAATACACAGCGCTTGGGTGTTGTATAATCTTTCCATAGTGCTTTTCTTATGAACCCTTCAGTATGTAGGATATTTACAAATGAAATTAAATCCGTAATAGATGAAACTAACGCATTTTGTGAACGTGTGAGTGTGTGTTGTTTATTACTCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1469#0 CAGATCCCCGNGGTTAAGTGTAGATACACACAAGGGCCGCAACATTTACACGCAAAACGA 60 consensus_1469#1 CCGCGCATGACGCTCTAAACCGGA-ATGTGAAGGCTTCGTGACAGTTGTTTGAAGCAAGA 59 * * * * * * ** * * * ** *** ** * * * ** consensus_1469#0 TTACGTTTGATTTTCCTTCCCCGGGGAAAGCAAAAAACAATACACAGCGACTTGGGTGTT 120 consensus_1469#1 ATAGTGTTAAT---CCTTGCCT-----AAATTGCTAACATTACA--ATTTCCTATCTGCT 109 ** ** ** **** ** ** **** **** * * ** * consensus_1469#0 GTATAATCTTTCCATAGTGCTTTTCTTATGAACCCTTCAT-ATGTAGGCATATTTACAAA 179 consensus_1469#1 GCACCAGGT-------GCGCTTTCGCAATTTATCTTCAACCGTTTGCACCTATTTATGAC 162 * * * * * ***** ** * * * * * * * ****** * consensus_1469#0 TGCAAATTAAACCCGTAATAGATGCAACACTAACGCATTTAAGTGAACGTGTGAGTGTGT 239 consensus_1469#1 ATTGTGTGGCATGCGTGCGAGCGGAGTCGTTTGCTCTATTCTATG--CTTGAAAATGGAC 220 * * *** ** * * * * * ** ** * ** * ** consensus_1469#0 GTCGTAATATATACTCGGGGGGGTGATGGCATTANACANAGGTTCGTGGACAGAGCTGGC 299 consensus_1469#1 TATTTTTCTTATGTTACAAATAATGATTTGTTTATTTAGTTTTTCGTACATGTCGCAAAT 280 * *** * **** *** * ***** * ** consensus_1469#0 CGCACCAAACCATAGTGGGGCACACAGCAGACCACCGATGATGGTAGCGCAGTACATCCA 359 consensus_1469#1 GATTTCTTTTTTAATTTAAAACTGAAGGAAACTGAAATGTATCTTTCCCTACCTGTACGC 340 * * * ** * ** ** * * * * consensus_1469#0 ATTACGCATCGAAGAACATGTATTAGTGCAGCGTTTGTGTGATGATGCTGTGCAANATGA 419 consensus_1469#1 TTTTCGAGTCGGTTTAAATGTAT-AATATGGAATTTATCCGATGAAAGCATAAAACCCGA 399 ** ** *** * ****** * * * *** * ***** * ** ** consensus_1469#0 CACACATACAGAGATCCACAAAATGAACTG---CCTCTANAACAGTAAGCTGANGACGCG 476 consensus_1469#1 -ATAAGTGGCAGGATT-ACAAATTGAAGGGGATCCTCTGTCGCA-TGAAGTGTAGATACA 456 * * * *** ***** **** * ***** ** * * ** ** * consensus_1469#0 CATTATCAACATGTAATATCACTTGCATAGC---TNCACACGGTCTACCCCCTATGGATG 533 consensus_1469#1 CACAAGGGCCGCAACAT-TTACACGCAAAACGATTACGTTTGATATTCCTTCCCCGGGGA 515 ** * * ** * ** *** * * * * * * * ** * ** consensus_1469#0 GA-CATNCTACAATATCAGGATCATCTACCCCTTAAAATTTTAACAAACAACCTATGGGT 592 consensus_1469#1 AAGCAAAAAACAATACACAGCGCTTGGGTGTTGTATAATCTTTCCATAGTGCTTTTCTTA 575 * ** ****** * * * ** *** ** ** * * * * consensus_1469#0 TTGGCC----AACGCGTAGGATGTNGGTAGGATTGGCCGGCTTGATGGTTGGAGAGAGCG 648 consensus_1469#1 TGAACCCTTCAGTATGTAGGATATTTACAAATGAAATTAAATCCGTAATAGATGAAACTA 635 * ** * ******* * * * * * * ** * consensus_1469#0 GGGAAACAACCCCAAAACATAACACACTGGGCACCCACCCCGNCAGGACAACANACAAAC 708 consensus_1469#1 ---ACGCATTTTGTGAACGTGTGAGTGTGTGTTGTTTATTACTCGG-------------- 678 * ** *** * * ** * * * consensus_1469#0 GGCACGCAAAAACAACCGGACTACATTTTCCCGGAACN 746 consensus_1469#1 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||