cluster # 1480

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Anopheles gambiae
cluster # 1480 cluster # 1480 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1480#0 length = 811 sequences # 1

consensus_1480#1 length = 718 sequences # 1

consensusID : consensus_1480#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 811
fasta sequence

                              [CAGCAGAATCCCCGCNGGTTACGCATGCTAAACTAACCATATTGCAACTCGTATCAATTTTGATGTGCACTGTATCCCAGTAAGAATATAAACACCCCAGTACACAGGCAACTAAGCAAATCTTGTATCATTTATTATATACTTATTGAAAATATGCGGAAATGCCAGAACAAGGTACGGAAACTAATCGCTCAGCCATGGATAGAAAGACTAGTGTATATTTTGTACGNATATATGCATATGTAGCTTTTNTTGCACAGTCACCNAAATGTAATACATACGCAGCCCGCGCAGNACGCAAATTGGCAGTTGCACAGCAGATTTGTGGGTAAACACTTTTCCCANCATTNTATAAATCCGATGTGCTCCCCNTGGGTGGCGGAGCAATCAAAATTCTTATACAAACACAGACAACANAATACCAAAACAGGCNACGAGGCACAATTACCAATANCCAATACCAATTCCAACATGGCGGTTACCAGCAATCGTATNGGTAGCAAGCCATNTGAAGCCGAACATTGCTGGTTACTTTCGCACAACATGAATTGGCAAACCAAAACACACAACGAATTTGACTACTATACTTNCTTCAACCNACNTTANAACACANTNTCGGGCACATTCGGCAACACACGGCCTTTTAGGACCTTGTCACTCTAAACCCTTCTGGTTTCCCCACCATTGGATTNATGGNACAATTAGGCNCCCTGGAAACGCACCTTTTTGGCCCGGCCACNACANGCAACACGCTGGGCACCATGGAGAAACAGCNCATACTTTCAATTAAAACANTCCTTCNCATCCGCAC]

[+] EMBL AL692371             [CAGCAGAATCCCCGCNGGTTACGCATGCTAAACTAACCATATTGCAACTCGTATCAATTTTGATGTGCACTGTATCCCAGTAAGAATATAAACACCCCAGTACACAGGCAACTAAGCAAATCTTGTATCATTTATTATATACTTATTGAAAATATGCGGAAATGCCAGAACAAGGTACGGAAACTAATCGCTCAGCCATGGATAGAAAGACTAGTGTATATTTTGTACGNATATATGCATATGTAGCTTTTNTTGCACAGTCACCNAAATGTAATACATACGCAGCCCGCGCAGNACGCAAATTGGCAGTTGCACAGCAGATTTGTGGGTAAACACTTTTCCCANCATTNTATAAATCCGATGTGCTCCCCNTGGGTGGCGGAGCAATCAAAATTCTTATACAAACACAGACAACANAATACCAAAACAGGCNACGAGGCACAATTACCAATANCCAATACCAATTCCAACATGGCGGTTACCAGCAATCGTATNGGTAGCAAGCCATNTGAAGCCGAACATTGCTGGTTACTTTCGCACAACATGAATTGGCAAACCAAAACACACAACGAATTTGACTACTATACTTNCTTCAACCNACNTTANAACACANTNTCGGGCACATTCGGCAACACACGGCCTTTTAGGACCTTGTCACTCTAAACCCTTCTGGTTTCCCCACCATTGGATTNATGGNACAATTAGGCNCCCTGGAAACGCACCTTTTTGGCCCGGCCACNACANGCAACACGCTGGGCACCATGGAGAAACAGCNCATACTTTCAATTAAAACANTCCTTCNCATCCGCAC]




>consensus_1480#0
CAGCAGAATCCCCGCNGGTTACGCATGCTAAACTAACCATATTGCAACTCGTATCAATTT
TGATGTGCACTGTATCCCAGTAAGAATATAAACACCCCAGTACACAGGCAACTAAGCAAA
TCTTGTATCATTTATTATATACTTATTGAAAATATGCGGAAATGCCAGAACAAGGTACGG
AAACTAATCGCTCAGCCATGGATAGAAAGACTAGTGTATATTTTGTACGNATATATGCAT
ATGTAGCTTTTNTTGCACAGTCACCNAAATGTAATACATACGCAGCCCGCGCAGNACGCA
AATTGGCAGTTGCACAGCAGATTTGTGGGTAAACACTTTTCCCANCATTNTATAAATCCG
ATGTGCTCCCCNTGGGTGGCGGAGCAATCAAAATTCTTATACAAACACAGACAACANAAT
ACCAAAACAGGCNACGAGGCACAATTACCAATANCCAATACCAATTCCAACATGGCGGTT
ACCAGCAATCGTATNGGTAGCAAGCCATNTGAAGCCGAACATTGCTGGTTACTTTCGCAC
AACATGAATTGGCAAACCAAAACACACAACGAATTTGACTACTATACTTNCTTCAACCNA
CNTTANAACACANTNTCGGGCACATTCGGCAACACACGGCCTTTTAGGACCTTGTCACTC
TAAACCCTTCTGGTTTCCCCACCATTGGATTNATGGNACAATTAGGCNCCCTGGAAACGC
ACCTTTTTGGCCCGGCCACNACANGCAACACGCTGGGCACCATGGAGAAACAGCNCATAC
TTTCAATTAAAACANTCCTTCNCATCCGCAC

consensusID : consensus_1480#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 718
fasta sequence

                              [TACTGAAAAGAAGAACATGTTAAGCGCATTGATGATGAAACTCACAATTTATCAACAACAATTTTTATGACAAAAAAAAAATTGTAACTGTAAACATCACACTGGTTGCTCGTACATAATGCAACCACTTTCCCCTTTCCACACATTTTAGTTCGGTTTTGATGTGCGTGATGAGCGTTTGAGATAAATTTAAATATGGTATATAGTAATAATAATTATAGTATGATGTGCGTAAACAACATCTAGAAGGTGATCGTGGCATATTAATAATAATTGCATTTCATAGCTACAAAATAACTCTATTTTGCAATATATATACTAAATCAATGCATAATATCCCTACTAATGATCATCACTGACGCATGCTAAACTAACATATTGAACTCGATCAATTTTGATGTGCACTGTATCCCAGTAAGAATATAAACACCCCAGTACACTAAGCAAATCTTGTATCATTTATTATATACTTATTGAAAATATGCGGAAATGCAGAAAAGGTACGGAAACTAATCGCTAGCATGGATGAAGACTGTGTATTTTTGTACGATTATGCTTGTAGCTTTTATGAAGTCACAAATGTAATACATCGCGCCCGCGCAGACGCAAATGGAGTTGAAGAGATTGTGGTAAATTTCCACTTTTTTCGTTGTCCATGGTGCGAGATCAAATCTTAAAAGACACAATACAAAGCAGAGCACATACCATTCCATACCAT]

[+] EMBL BX612799             [TACTGAAAAGAAGAACATGTTAAGCGCATTGATGATGAAACTCACAATTTATCAACAACAATTTTTATGACAAAAAAAAAATTGTAACTGTAAACATCACACTGGTTGCTCGTACATAATGCAACCACTTTCCCCTTTCCACACATTTTAGTTCGGTTTTGATGTGCGTGATGAGCGTTTGAGATAAATTTAAATATGGTATATAGTAATAATAATTATAGTATGATGTGCGTAAACAACATCTAGAAGGTGATCGTGGCATATTAATAATAATTGCATTTCATAGCTACAAAATAACTCTATTTTGCAATATATATACTAAATCAATGCATAATATCCCTACTAATGATCATCACTGACGCATGCTAAACTAACATATTGAACTCGATCAATTTTGATGTGCACTGTATCCCAGTAAGAATATAAACACCCCAGTACACTAAGCAAATCTTGTATCATTTATTATATACTTATTGAAAATATGCGGAAATGCAGAAAAGGTACGGAAACTAATCGCTAGCATGGATGAAGACTGTGTATTTTTGTACGATTATGCTTGTAGCTTTTATGAAGTCACAAATGTAATACATCGCGCCCGCGCAGACGCAAATGGAGTTGAAGAGATTGTGGTAAATTTCCACTTTTTTCGTTGTCCATGGTGCGAGATCAAATCTTAAAAGACACAATACAAAGCAGAGCACATACCATTCCATACCAT]




>consensus_1480#1
TACTGAAAAGAAGAACATGTTAAGCGCATTGATGATGAAACTCACAATTTATCAACAACA
ATTTTTATGACAAAAAAAAAATTGTAACTGTAAACATCACACTGGTTGCTCGTACATAAT
GCAACCACTTTCCCCTTTCCACACATTTTAGTTCGGTTTTGATGTGCGTGATGAGCGTTT
GAGATAAATTTAAATATGGTATATAGTAATAATAATTATAGTATGATGTGCGTAAACAAC
ATCTAGAAGGTGATCGTGGCATATTAATAATAATTGCATTTCATAGCTACAAAATAACTC
TATTTTGCAATATATATACTAAATCAATGCATAATATCCCTACTAATGATCATCACTGAC
GCATGCTAAACTAACATATTGAACTCGATCAATTTTGATGTGCACTGTATCCCAGTAAGA
ATATAAACACCCCAGTACACTAAGCAAATCTTGTATCATTTATTATATACTTATTGAAAA
TATGCGGAAATGCAGAAAAGGTACGGAAACTAATCGCTAGCATGGATGAAGACTGTGTAT
TTTTGTACGATTATGCTTGTAGCTTTTATGAAGTCACAAATGTAATACATCGCGCCCGCG
CAGACGCAAATGGAGTTGAAGAGATTGTGGTAAATTTCCACTTTTTTCGTTGTCCATGGT
GCGAGATCAAATCTTAAAAGACACAATACAAAGCAGAGCACATACCATTCCATACCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1480#0      CAGCAGAATCCCCGCNGGTTACGCATGCTAAACTAACCATATTGCAACTCGTATCAATTT 60
consensus_1480#1      -------------------------TACTGAAAAGAAGAACATGTTAAGCGCATTGATGA 35
                                               * ** **   *  *   **  *  ** **  **  

consensus_1480#0      TGATGTGCACTGTATCCCAGTAAGAATATAAACACCCCAGTACACAG-GCAACTAAGCAA 119
consensus_1480#1      TGAAACTCACAATTTATCAACAACAATTTTTATGACAAAAAAAAAATTGTAACT--GTAA 93
                      ***    ***  * *  **  ** *** *  *   *  *  * * *  * ****  * **

consensus_1480#0      ATCTTGTATCATTTATTATATACTTATTGAAAATATGCGGAAATGCCAGAACAAGGTACG 179
consensus_1480#1      ACATCACACTGGTTGCT-CGTACATAATGCAACCACTT-----TCCCCTTTCCACACATT 147
                      *  *   *    **  *   *** ** ** **  *        * **    * *   *  

consensus_1480#0      GAAACTAATCGCTCAGCCATGGATAGAAAGACTAGTGTATATTTTGTACGNATATATGCA 239
consensus_1480#1      TTAGTTCGGTTTTGATGTGCGTGATGAGCGTTTGAGATAAATTTAAATATGGTATATA-G 206
                        *  *      * *     *    **  *  *    ** ****        *****   

consensus_1480#0      TATGTAGCTTTTNTTGCACAGTCACCNAAATGTAATACATACGCAGCCCGCGCAGNACGC 299
consensus_1480#1      TA-ATAATAATTATAGTATGATGTGCGTAA-ACAACATCTAGAAGGTGATCGTGGCATAT 264
                      **  **    ** * * *   *   *  **   ** *  **    *    **  * *   

consensus_1480#0      AAATTGGCAGTTGCACAGCAGATTTGTGGGTAAACACTTTTCCCANCATTNTATAAATCC 359
consensus_1480#1      TAAT-AATAATTGCATTTCATAGCTACAAAATAACTCTATTTT--GCAATATATATACTA 321
                       ***    * *****   ** *  *       *** ** **     ** * **** *   

consensus_1480#0      GATGTGCTCCCCNTGGGTGGCGGAGCAATCAAAATTCTTATACAAACACAGACAACANAA 419
consensus_1480#1      AAT-------CAATGCATAATATCCCTACTAATGATCAT-CACTGACGCATGC--TAAAC 371
                       **       *  **  *       * *  **   ** *  **  ** **  *   * * 

consensus_1480#0      TACCAAAACAGGCNACGAGGCACAATTACCAATANCCAATACCAATTCCAACATGGCGGT 479
consensus_1480#1      TAACATATTGAACT-CGAT---CAATT-TTGATGTGCACTGT--ATCCCAGTAAGAATAT 424
                      ** ** *     *  ***    *****    **   ** *    ** ***  * *    *

consensus_1480#0      TACCAGCAATCGTATNGGTAGCAAGCCATNTGAAGCCGAACATTGCTGGTTACTTTCGCA 539
consensus_1480#1      AAACACCC-CAGTACACTAAGCAAATCTTGTATCAT------TTATTATATACTTATTGA 477
                       * ** *    ***     *****  * * *           **  *   *****    *

consensus_1480#0      CAACATGAATTGGCAAACCAAAACACACAACGAATTTGACTACTATACTTNCTTCAACCN 599
consensus_1480#1      AAATATG---CGGAAATGCAGAAAAGGTACGGAAACTAATCGCTA-----GCATGGATGA 529
                       ** ***    ** **  ** ** *   *  ***  * *   ***      * *  *   

consensus_1480#0      ACNTTANAACACANTNTCGGGCACATTCGGCAACACACGGCCTTTTAGGACCTTGTCACT 659
consensus_1480#1      AGACTGTG---TATTTTTGTACGATTATGCTTGTAG-----CTTTTATGAAGTCACAAAT 581
                      *   *       * * * *  *   *  *     *      ****** **  *    * *

consensus_1480#0      CTAAACCCTTCTGGTTTCCCCACCATTGGATTNATGGNACAATTAGGCNCCCTGGAAACG 719
consensus_1480#1      GTAATACATCGCG---CCCGCGCAGACGCAAATGGAGTTGAAGAGATTGTGGTAAATTTC 638
                       ***  * *   *    ** * *    * *      *   **          *  *    

consensus_1480#0      CACCTTTTTGGCCCGGCCACNACANGCAACACGCTGGGCACCATGGAGAAACAGCNCATA 779
consensus_1480#1      CACTTTTTTCGTT-GTCCATGGTGCGAGA-----TCAAATCTTAAAAGACACAATACAAA 692
                      *** ***** *   * ***      *  *     *     *     *** ***   ** *

consensus_1480#0      CTTTCAATTAAAACANTCCTTCNCATCCGCAC 811
consensus_1480#1      GCAGAGCACATACCATTCCATACCAT------ 718
                               * * ** *** *  ***