These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1485#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence [GACCCACGCGTCCGACGACTACATGCTGGGGCAGCTGAACAACTTTGGCCAGCCGGTGGGTGCCGCCGGCGAGGCGGTGGTGCCGGGCAACAATCTCAACACGTTCGGGGCACACCATCACCATGCGGCGGTGCAGCCACCGTTGCCACCGCACCGTCGGCAGGCGCTCGTCCACACGCCAACGTTCCTGGACGGTGACACCGCCAGCAGCCCGATCGATCCGATCTACTACAACATGAACTCTTCTTCGCCGTTGCTGCAGCAGCAAACCTCCTGGGGTGTGTCGACCTCCTCCCCGCAGGGTATGGGAGCTGTACCAGGCAGTGGCATCCATGCCGGACTGTCCAATCCCGTCTACCAGCACTCGACCACCAACCTGAACCACAGCCCGGAGCTGAACGAGGAGTATTACGGCACGAACGGACAGAATCGGCCACCGTCGGTACGGTCCAGCTACTCCAACTTTCACGGGACGCGCCCACTGAGCTCGTACCTGGGCGGTGGTGGTACTGGAGGAGTAGCCCAGCCGGGCGGTATCACCAATCGGGGCTACAACGTGTCACCGCCGGGACAGCATGGAGGGACCACCGCTGGCGGCGGACAGGTGGAGAACGTGTTCGCTAATCTGACGAGCGGCGGCGGCAACACCAACCACCAGCAGCAGTACGGGGGTATCACGGGCGGCAGT] [+] EMBL BM649078 [GACCCACGCGTCCGACGACTACATGCTGGGGCAGCTGAACAACTTTGGCCAGCCGGTGGGTGCCGCCGGCGAGGCGGTGGTGCCGGGCAACAATCTCAACACGTTCGGGGCACACCATCACCATGCGGCGGTGCAGCCACCGTTGCCACCGCACCGTCGGCAGGCGCTCGTCCACACGCCAACGTTCCTGGACGGTGACACCGCCAGCAGCCCGATCGATCCGATCTACTACAACATGAACTCTTCTTCGCCGTTGCTGCAGCAGCAAACCTCCTGGGGTGTGTCGACCTCCTCCCCGCAGGGTATGGGAGCTGTACCAGGCAGTGGCATCCATGCCGGACTGTCCAATCCCGTCTACCAGCACTCGACCACCAACCTGAACCACAGCCCGGAGCTGAACGAGGAGTATTACGGCACGAACGGACAGAATCGGCCACCGTCGGTACGGTCCAGCTACTCCAACTTTCACGGGACGCGCCCACTGAGCTCGTACCTGGGCGGTGGTGGTACTGGAGGAGTAGCCCAGCCGGGCGGTATCACCAATCGGGGCTACAACGTGTCACCGCCGGGACAGCATGGAGGGACCACCGCTGGCGGCGGACAGGTGGAGAACGTGTTCGCTAATCTGACGAGCGGCGGCGGCAACACCAACCACCAGCAGCAGTACGGGGGTATCACGGGCGGCAGT] consensusID : consensus_1485#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence [TTCCCCGAGGTTTGTACTGGAGGAGTAGCCCAGCCGGGCGGTATCACCAATCGGGGCTACAACGTGTCACCTGCCGGGACAGCATGGAGGGACCACCGCTGGCGGCGGACAGGTGGAGAACGTGTTCGCTAATCTGACGAGCGGCGGCGGCAACACCAACCACCAGCAGCAGTACGGGGGTATCACGGGCGGCAGTGCCGGTGGTACGGATCCGATCGCCATCCCCCAGCTACCCCACGGCGGTCGGTTTCGCGCGAAAGTATACGGGCGATGCAGTTCCTCAACAGTGGGCCACGGCCTACAATCTTAACTATCACACGCCACCGNATTCGGAGACTACCATGTGATTNTGAAGGGTGGGAAATGTTGTACATACACACACACACACACACACACAGNCANACCAACGCGCACACAGGCACACTCACATGANCACACACGTTACTATNCAAANTCTTGGGTCTTGCACTAGGCGCCGNNACACNTACGGCCTCTCTACTCCCCCACCGGCCGCAGGCCTTNTCGAC] [+] EMBL AL692406 [TTCCCCGAGGTTTGTACTGGAGGAGTAGCCCAGCCGGGCGGTATCACCAATCGGGGCTACAACGTGTCACCTGCCGGGACAGCATGGAGGGACCACCGCTGGCGGCGGACAGGTGGAGAACGTGTTCGCTAATCTGACGAGCGGCGGCGGCAACACCAACCACCAGCAGCAGTACGGGGGTATCACGGGCGGCAGTGCCGGTGGTACGGATCCGATCGCCATCCCCCAGCTACCCCACGGCGGTCGGTTTCGCGCGAAAGTATACGGGCGATGCAGTTCCTCAACAGTGGGCCACGGCCTACAATCTTAACTATCACACGCCACCGNATTCGGAGACTACCATGTGATTNTGAAGGGTGGGAAATGTTGTACATACACACACACACACACACACACAGNCANACCAACGCGCACACAGGCACACTCACATGANCACACACGTTACTATNCAAANTCTTGGGTCTTGCACTAGGCGCCGNNACACNTACGGCCTCTCTACTCCCCCACCGGCCGCAGGCCTTNTCGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1485#0 GACCCACGCGTCCGACGACTACATGCTGGGGCAGCTGAACAACTTTGGCCAGCCGGTGGG 60 consensus_1485#1 ----------------------------------TTCCCCGAGGTTTGT--ACTGGAGGA 24 * * * ** * * ** ** consensus_1485#0 TGCCGCCGGCGAGGCGGTGGTGCCGGGCAACAATCTCAACACGTTCGGGGCACACCATCA 120 consensus_1485#1 GTAGCCCAGCCGGGCGGTATCACCAATCGG-GGCTACAACGTGTC----ACCTGCCGGGA 79 ** ** ****** ** * **** ** * ** * consensus_1485#0 CCATGCGGCGGTGCAGCCACCGTTGCCACCGCACCGTCGGCAGGCGCTCGTCCACACGCC 180 consensus_1485#1 CAGCATGGAGG---GACCACCGCTGGCGGCGGACAGGTGGAGAACGTGT-TCGCTAATCT 135 * ** ** ****** ** * ** ** * ** ** ** * * consensus_1485#0 AACGTTCCTGGACGGTGACACCG-CCAGCAGCCCGATCGATCCGATCTACTACAACATGA 239 consensus_1485#1 GACGAGCGGCGGCGGCAACACCAACCACCAG--CAGCAGTACGGGGGTATCACGG-GCGG 192 *** * * *** ***** *** *** * * * * ** ** * consensus_1485#0 ACTCTTCTTCGCCGTTGCTGCAGCAGCAAACCTCCTGGGGT---GTGTCGACCTCCTCCC 296 consensus_1485#1 CAGTGCCGGTGGTACGGATCCGATCGCCATCCCCCAGCTACCCCACGGCGGTCGGTTTCG 252 * * * * * ** * ** ** * * ** * * * consensus_1485#0 CGC-AGGGTATGGGAGCTGTACCAGGCAGTGGCATCCATGCCGGACTGTCCAATCCCGTC 355 consensus_1485#1 CGCGAAAGTATACGGGCGATGCAGTTCCTCAACAGTGG-GCCACGGCCTACAATCTTAAC 311 *** * **** * ** * * * ** *** * ***** * consensus_1485#0 TACCAGCACTCGACCACCAACCTGAACCACAGCCCGGAGCTGAACGAGGAGTATTACGGC 415 consensus_1485#1 TATCA-CACGCCACCGNATTCGGAGACTACCATGTGATTNTGAAGGGTGGGAAATGTTGT 370 ** ** *** * *** * ** ** * **** * * * * * * consensus_1485#0 ACGAACGGACAGAATCGGCCACCGTCGGTACGGTCCAGCTACTCCAACTTTCACG-GGAC 474 consensus_1485#1 ACATACACACACACACACACAC----------ACACAGNCANACCAACGCGCACACAGGC 420 ** ** *** * * *** *** * ***** *** * * consensus_1485#0 GCGCCCAC-TGAGCTCGTACCTGGGCGGTGGTGGTACTGGAGGAGTAGCCCAGCCGGGCG 533 consensus_1485#1 ACACTCACATGANCACACACGTTA-CTATNCAAANTCTTGGGTCTTGCACTAGGCG--CC 477 * * *** *** * * ** * * * ** * * * * ** ** * consensus_1485#0 GTATCACCAATCGGGGCTACAACGTGTCACCGCCGGGACAGCATGGAGGGACCACCGCTG 593 consensus_1485#1 GNNACACNTACGGCCTCTCTACTCCCCCACCGGCCGCAGGCCTTNTCGAC---------- 527 * *** * * ** * ***** * * * * * * consensus_1485#0 GCGGCGGACAGGTGGAGAACGTGTTCGCTAATCTGACGAGCGGCGGCGGCAACACCAACC 653 consensus_1485#1 ------------------------------------------------------------ consensus_1485#0 ACCAGCAGCAGTACGGGGGTATCACGGGCGGCAGT 688 consensus_1485#1 ----------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||