These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1488#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [CCGGTCGACCGAACGCTACATCCGGTACGGTACTTGGATGGAAACATCTTTTTTAACGAAAATTGGAAACCGCGCGAGTTGAACTGAAACGGAAGCCAAAGTGTAGAGCGCGTTTATCGCCGAACGGAAAAGGGGGAAAAAAAGACGTAGCGGCCGTAGCGGGTGGTGGGAGCTTGGGAAGGCAACGGGAAGCAGCAGCATCAATCTCTACCCCCTCCCCCCTGGTTTGGTGGGCCGAAAAGGGTGGACAGAAAGGCCGGAGCGCAGTGAGCGCCCTTTTCTTCCGCCGTGGTGCGTGGTTAGTGCGCGTGCGTGCGTGAGTGCGTGCCGTGTGTGTGTGTTCGCGCGCCCTTGTTCCGTGTGCTCGGGAGTGTGTGTGCGTGCGCGCTGTTTTCCGTGTGCTGCTGCGCCGTGCGTGTGTGGCGCCATTCCGACGTGCTTTCGCGAGCCGTACCAGTGTGAGTGTGTGCGGGGAGGTTTTTTTTGGTGTGTGCTTTCTCGGTTGTTTGGAAACGGCAGATAACGCCAACGCGAAGCGAACGGCGGCTGGCGGGCGGTGTGGAAGTGAAAGCGAAGGGTATGCGCGCGCGTTTTTCTGCCGTA] [+] EMBL BM657425 [CCGGTCGACCGAACGCTACATCCGGTACGGTACTTGGATGGAAACATCTTTTTTAACGAAAATTGGAAACCGCGCGAGTTGAACTGAAACGGAAGCCAAAGTGTAGAGCGCGTTTATCGCCGAACGGAAAAGGGGGAAAAAAAGACGTAGCGGCCGTAGCGGGTGGTGGGAGCTTGGGAAGGCAACGGGAAGCAGCAGCATCAATCTCTACCCCCTCCCCCCTGGTTTGGTGGGCCGAAAAGGGTGGACAGAAAGGCCGGAGCGCAGTGAGCGCCCTTTTCTTCCGCCGTGGTGCGTGGTTAGTGCGCGTGCGTGCGTGAGTGCGTGCCGTGTGTGTGTGTTCGCGCGCCCTTGTTCCGTGTGCTCGGGAGTGTGTGTGCGTGCGCGCTGTTTTCCGTGTGCTGCTGCGCCGTGCGTGTGTGGCGCCATTCCGACGTGCTTTCGCGAGCCGTACCAGTGTGAGTGTGTGCGGGGAGGTTTTTTTTGGTGTGTGCTTTCTCGGTTGTTTGGAAACGGCAGATAACGCCAACGCGAAGCGAACGGCGGCTGGCGGGCGGTGTGGAAGTGAAAGCGAAGGGTATGCGCGCGCGTTTTTCTGCCGTA] consensusID : consensus_1488#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [CCGCGGACGCGTGGGCGCGTTTATCGCCGAACGGCAAAAGGGGGAAAAAAAGACGTAGCGGCCGTAGCAGGTGGTGGCAACGGGAAGCAGCAGCATCAATCTCTCCCCCCCCCCCTGGTTTGGTGGACCCCGAAAAGGGTGGACAGAAAGGCCGGAGCGCAGTGAGCGCCCTTTTCTTCCGCCGTGGTGCGTGGTTAGTGCGCGTGCGTGCGTGAGTGCGTGCCGTGTGTGTGTGTGTGTGTGTTCGCGCGCCCTTGTTCCGTGTGCTCGCGAGTGTGTGTGCGTGCGTGCGCGCTGTTTTCCGTGTGCTGCTGCGCCGTGCGTGTGTGGCGCCATTCCGACGTGCTTTCGCGAGCCGTGCCAGTGTGTGTGAGTGTGTGCGGGGAGGTTTTTTTTTTGGTGTGTGCTTTCTCGGTTGTTTGGAAACGGCAGATAACGCCAACGCGAAGCGAACGGCGGCTGGCGGGCGGTGTGGAAGTGAAAGCGAAGGGTATGCGCGCGCGTTTTTCTGCCGTACCGTGGCTTTGTGGTTTGCTTGCCGCGTTGCATCCCTGCCTGGCGATGCTGTGTGCGTGAGTGTAATGTG] [+] EMBL BM648679 [CCGCGGACGCGTGGGCGCGTTTATCGCCGAACGGCAAAAGGGGGAAAAAAAGACGTAGCGGCCGTAGCAGGTGGTGGCAACGGGAAGCAGCAGCATCAATCTCTCCCCCCCCCCCTGGTTTGGTGGACCCCGAAAAGGGTGGACAGAAAGGCCGGAGCGCAGTGAGCGCCCTTTTCTTCCGCCGTGGTGCGTGGTTAGTGCGCGTGCGTGCGTGAGTGCGTGCCGTGTGTGTGTGTGTGTGTGTTCGCGCGCCCTTGTTCCGTGTGCTCGCGAGTGTGTGTGCGTGCGTGCGCGCTGTTTTCCGTGTGCTGCTGCGCCGTGCGTGTGTGGCGCCATTCCGACGTGCTTTCGCGAGCCGTGCCAGTGTGTGTGAGTGTGTGCGGGGAGGTTTTTTTTTTGGTGTGTGCTTTCTCGGTTGTTTGGAAACGGCAGATAACGCCAACGCGAAGCGAACGGCGGCTGGCGGGCGGTGTGGAAGTGAAAGCGAAGGGTATGCGCGCGCGTTTTTCTGCCGTACCGTGGCTTTGTGGTTTGCTTGCCGCGTTGCATCCCTGCCTGGCGATGCTGTGTGCGTGAGTGTAATGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1488#0 CCGGTCGACCGAACGCTACATCCGGTACGGTACTTGGATGGAAACATCTTTTTTAACGAA 60 consensus_1488#1 ------------------------------------------------------------ consensus_1488#0 AATTGGAAACCGCGCGAGTTGAACTGAAACGGAAGCCAAAGTGTAGAGCGCGTTTATCGC 120 consensus_1488#1 --------------------------------CCGCGGACGCGT-GGGCGCGTTTATCGC 27 ** * * ** * ************* consensus_1488#0 CGAACGG-AAAAGGGGGAAAAAAAGACGTAGCGGCCGTAGCGGGTGGTGGGAGCTTGGGA 179 consensus_1488#1 CGAACGGCAAAAGGGGGAAAAAAAGACGTAGCGGCCGTAGCAGGTGGTGG---------- 77 ******* ********************************* ******** consensus_1488#0 AGGCAACGGGAAGCAGCAGCATCAATCTCTACCCCCTCCCCCCTGGTTTGGTGGGCC--G 237 consensus_1488#1 ---CAACGGGAAGCAGCAGCATCAATCTCT--CCCCCCCCCCCTGGTTTGGTGGACCCCG 132 *************************** **** ***************** ** * consensus_1488#0 AAAAGGGTGGACAGAAAGGCCGGAGCGCAGTGAGCGCCCTTTTCTTCCGCCGTGGTGCGT 297 consensus_1488#1 AAAAGGGTGGACAGAAAGGCCGGAGCGCAGTGAGCGCCCTTTTCTTCCGCCGTGGTGCGT 192 ************************************************************ consensus_1488#0 GGTTAGTGCGCGTGCGTGCGTGAGTGCGTGCCGTGTGTGTGTGT--------TCGCGCGC 349 consensus_1488#1 GGTTAGTGCGCGTGCGTGCGTGAGTGCGTGCCGTGTGTGTGTGTGTGTGTGTTCGCGCGC 252 ******************************************** ******** consensus_1488#0 CCTTGTTCCGTGTGCTCGGGAGTGTGTGTGCGTGCG----CGCTGTTTTCCGTGTGCTGC 405 consensus_1488#1 CCTTGTTCCGTGTGCTCGCGAGTGTGTGTGCGTGCGTGCGCGCTGTTTTCCGTGTGCTGC 312 ****************** ***************** ******************** consensus_1488#0 TGCGCCGTGCGTGTGTGGCGCCATTCCGACGTGCTTTCGCGAGCCGTACCAGTGTG---- 461 consensus_1488#1 TGCGCCGTGCGTGTGTGGCGCCATTCCGACGTGCTTTCGCGAGCCGTGCCAGTGTGTGTG 372 *********************************************** ******** consensus_1488#0 AGTGTGTGCGGGGAGGTTTTTTTT--GGTGTGTGCTTTCTCGGTTGTTTGGAAACGGCAG 519 consensus_1488#1 AGTGTGTGCGGGGAGGTTTTTTTTTTGGTGTGTGCTTTCTCGGTTGTTTGGAAACGGCAG 432 ************************ ********************************** consensus_1488#0 ATAACGCCAACGCGAAGCGAACGGCGGCTGGCGGGCGGTGTGGAAGTGAAAGCGAAGGGT 579 consensus_1488#1 ATAACGCCAACGCGAAGCGAACGGCGGCTGGCGGGCGGTGTGGAAGTGAAAGCGAAGGGT 492 ************************************************************ consensus_1488#0 ATGCGCGCGCGTTTTTCTGCCGTA------------------------------------ 603 consensus_1488#1 ATGCGCGCGCGTTTTTCTGCCGTACCGTGGCTTTGTGGTTTGCTTGCCGCGTTGCATCCC 552 ************************ consensus_1488#0 ---------------------------------- consensus_1488#1 TGCCTGGCGATGCTGTGTGCGTGAGTGTAATGTG 586 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||