cluster # 1489

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Anopheles gambiae
cluster # 1489 cluster # 1489 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1489#0 length = 741 sequences # 1

consensus_1489#1 length = 586 sequences # 1

consensusID : consensus_1489#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 741
fasta sequence

                              [CGCCCGAGGTTNAGAACACAACTACACAACCATAAGGAATGTCTTGCCTTTGTTTTAACGTTATACTAATTACGTGTCGGGCTTCGAGACCTATTATAATCAGTTTTGAATAGGTTTATACTTTAGTTGTACGTACCGATTCGGTATTATCTTGCAAACGTCTCTCAGTGTAAAAGGCAAATGCAACTGTATTTGCTTGCCCCTCGTTCTCTGCTCTCTTTCTCTCTCTCACACACACTCTCTTCAGTTAATATATTGAATATGTATTAACCCTATGTAAACCCCGAAGCCTCAACATACTATGTTGANACTGTTCTGAAACACAGAACCTCCTAAAGGATAATGCGCCCATTTACAGTAATTAAGCACAAATTTTAACACAACACAAACACAAACACCACACAGTTGTTACATTTGAAGTCAAAGATAAAACAAAGGTACACGCTTAAATCAATTNTTAAGCACACTTGTACTGGTANNACTATTTCCTTTAACAATAAGAGGTACAAGCGGGCGCTAATGGGTCTCTTTTACCGACATTTTCTCATACCTACAATTAACCCGGGGAAGCCGGCCGCCGGTTANCACGGTCATTAAACANTTGGNANCCACACCAACATGCANTGGCACGCAACGCANCGCNAACTTTCACTCCTCTGGCGCACACGTCCCANATCCCTCGGGTAATAACCACCCAAACATTCAACCGCTTCCCAANAANCCAGCTGNTAGGCAGGGCAA]

[+] EMBL AL692417             [CGCCCGAGGTTNAGAACACAACTACACAACCATAAGGAATGTCTTGCCTTTGTTTTAACGTTATACTAATTACGTGTCGGGCTTCGAGACCTATTATAATCAGTTTTGAATAGGTTTATACTTTAGTTGTACGTACCGATTCGGTATTATCTTGCAAACGTCTCTCAGTGTAAAAGGCAAATGCAACTGTATTTGCTTGCCCCTCGTTCTCTGCTCTCTTTCTCTCTCTCACACACACTCTCTTCAGTTAATATATTGAATATGTATTAACCCTATGTAAACCCCGAAGCCTCAACATACTATGTTGANACTGTTCTGAAACACAGAACCTCCTAAAGGATAATGCGCCCATTTACAGTAATTAAGCACAAATTTTAACACAACACAAACACAAACACCACACAGTTGTTACATTTGAAGTCAAAGATAAAACAAAGGTACACGCTTAAATCAATTNTTAAGCACACTTGTACTGGTANNACTATTTCCTTTAACAATAAGAGGTACAAGCGGGCGCTAATGGGTCTCTTTTACCGACATTTTCTCATACCTACAATTAACCCGGGGAAGCCGGCCGCCGGTTANCACGGTCATTAAACANTTGGNANCCACACCAACATGCANTGGCACGCAACGCANCGCNAACTTTCACTCCTCTGGCGCACACGTCCCANATCCCTCGGGTAATAACCACCCAAACATTCAACCGCTTCCCAANAANCCAGCTGNTAGGCAGGGCAA]




>consensus_1489#0
CGCCCGAGGTTNAGAACACAACTACACAACCATAAGGAATGTCTTGCCTTTGTTTTAACG
TTATACTAATTACGTGTCGGGCTTCGAGACCTATTATAATCAGTTTTGAATAGGTTTATA
CTTTAGTTGTACGTACCGATTCGGTATTATCTTGCAAACGTCTCTCAGTGTAAAAGGCAA
ATGCAACTGTATTTGCTTGCCCCTCGTTCTCTGCTCTCTTTCTCTCTCTCACACACACTC
TCTTCAGTTAATATATTGAATATGTATTAACCCTATGTAAACCCCGAAGCCTCAACATAC
TATGTTGANACTGTTCTGAAACACAGAACCTCCTAAAGGATAATGCGCCCATTTACAGTA
ATTAAGCACAAATTTTAACACAACACAAACACAAACACCACACAGTTGTTACATTTGAAG
TCAAAGATAAAACAAAGGTACACGCTTAAATCAATTNTTAAGCACACTTGTACTGGTANN
ACTATTTCCTTTAACAATAAGAGGTACAAGCGGGCGCTAATGGGTCTCTTTTACCGACAT
TTTCTCATACCTACAATTAACCCGGGGAAGCCGGCCGCCGGTTANCACGGTCATTAAACA
NTTGGNANCCACACCAACATGCANTGGCACGCAACGCANCGCNAACTTTCACTCCTCTGG
CGCACACGTCCCANATCCCTCGGGTAATAACCACCCAAACATTCAACCGCTTCCCAANAA
NCCAGCTGNTAGGCAGGGCAA

consensusID : consensus_1489#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence

                              [GAACAATTTATGAGATTAAAGCGTTGTATGTACAAGATAGATATGTACCTTTTCCAACCATGAAGCACACCTACTGTATTTAACAACCTTCAGTTTAAACACATTCCTTCAGACAGAAGTCTTTGGTATTTTGCAACTGTATTCCTTATAACATATAACGTGTTTTTTGTTCTGTTTTGCAAAATATTATCACTTCAGAGCCAGAAGTAGTATATATGGGTATTATTTATATACCATCAACATTATAAAGATACTAACACAGAACACAACTACACAACCATAAGGAATGTCTTGCCTTTGTTTTAACGTTATACTAATTACGTGTCGGGCTTCGAGACCTATTATAATCAGTTTTGAATGGTTTATACTTTAGTTGTACGTACCGATTCGGTATTATCTTGCAAACGTCTCTCAGTGTAAAAGGCAAATGCAACTGTATTTTGCTTGCCCCTCGTGCTCTGCTCTCTTTCTCTCTCTCACACACACTCTCTTCAGNTATATATGAATATGTATTAACCTATGTAACCCCGAAGCTCAACATACTTTGTTGAAACTGTTCTGAAACAGAACCTCCTAAAGATATGCG]

[+] EMBL BX626971             [GAACAATTTATGAGATTAAAGCGTTGTATGTACAAGATAGATATGTACCTTTTCCAACCATGAAGCACACCTACTGTATTTAACAACCTTCAGTTTAAACACATTCCTTCAGACAGAAGTCTTTGGTATTTTGCAACTGTATTCCTTATAACATATAACGTGTTTTTTGTTCTGTTTTGCAAAATATTATCACTTCAGAGCCAGAAGTAGTATATATGGGTATTATTTATATACCATCAACATTATAAAGATACTAACACAGAACACAACTACACAACCATAAGGAATGTCTTGCCTTTGTTTTAACGTTATACTAATTACGTGTCGGGCTTCGAGACCTATTATAATCAGTTTTGAATGGTTTATACTTTAGTTGTACGTACCGATTCGGTATTATCTTGCAAACGTCTCTCAGTGTAAAAGGCAAATGCAACTGTATTTTGCTTGCCCCTCGTGCTCTGCTCTCTTTCTCTCTCTCACACACACTCTCTTCAGNTATATATGAATATGTATTAACCTATGTAACCCCGAAGCTCAACATACTTTGTTGAAACTGTTCTGAAACAGAACCTCCTAAAGATATGCG]




>consensus_1489#1
GAACAATTTATGAGATTAAAGCGTTGTATGTACAAGATAGATATGTACCTTTTCCAACCA
TGAAGCACACCTACTGTATTTAACAACCTTCAGTTTAAACACATTCCTTCAGACAGAAGT
CTTTGGTATTTTGCAACTGTATTCCTTATAACATATAACGTGTTTTTTGTTCTGTTTTGC
AAAATATTATCACTTCAGAGCCAGAAGTAGTATATATGGGTATTATTTATATACCATCAA
CATTATAAAGATACTAACACAGAACACAACTACACAACCATAAGGAATGTCTTGCCTTTG
TTTTAACGTTATACTAATTACGTGTCGGGCTTCGAGACCTATTATAATCAGTTTTGAATG
GTTTATACTTTAGTTGTACGTACCGATTCGGTATTATCTTGCAAACGTCTCTCAGTGTAA
AAGGCAAATGCAACTGTATTTTGCTTGCCCCTCGTGCTCTGCTCTCTTTCTCTCTCTCAC
ACACACTCTCTTCAGNTATATATGAATATGTATTAACCTATGTAACCCCGAAGCTCAACA
TACTTTGTTGAAACTGTTCTGAAACAGAACCTCCTAAAGATATGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1489#0      ------------------------------------------------------------
consensus_1489#1      GAACAATTTATGAGATTAAAGCGTTGTATGTACAAGATAGATATGTACCTTTTCCAACCA 60
                                                                                  

consensus_1489#0      ------------------------------------------------------------
consensus_1489#1      TGAAGCACACCTACTGTATTTAACAACCTTCAGTTTAAACACATTCCTTCAGACAGAAGT 120
                                                                                  

consensus_1489#0      ------------------------------------------------------------
consensus_1489#1      CTTTGGTATTTTGCAACTGTATTCCTTATAACATATAACGTGTTTTTTGTTCTGTTTTGC 180
                                                                                  

consensus_1489#0      ------------------------------------------------------------
consensus_1489#1      AAAATATTATCACTTCAGAGCCAGAAGTAGTATATATGGGTATTATTTATATACCATCAA 240
                                                                                  

consensus_1489#0      --------CGCCCGAGGTTNAGAACACAACTACACAACCATAAGGAATGTCTTGCCTTTG 52
consensus_1489#1      CATTATAAAGATACTAACACAGAACACAACTACACAACCATAAGGAATGTCTTGCCTTTG 300
                               *          ****************************************

consensus_1489#0      TTTTAACGTTATACTAATTACGTGTCGGGCTTCGAGACCTATTATAATCAGTTTTGAATA 112
consensus_1489#1      TTTTAACGTTATACTAATTACGTGTCGGGCTTCGAGACCTATTATAATCAGTTTTGAAT- 359
                      *********************************************************** 

consensus_1489#0      GGTTTATACTTTAGTTGTACGTACCGATTCGGTATTATCTTGCAAACGTCTCTCAGTGTA 172
consensus_1489#1      GGTTTATACTTTAGTTGTACGTACCGATTCGGTATTATCTTGCAAACGTCTCTCAGTGTA 419
                      ************************************************************

consensus_1489#0      AAAGGCAAATGCAACTGTATTT-GCTTGCCCCTCGTTCTCTGCTCTCTTTCTCTCTCTCA 231
consensus_1489#1      AAAGGCAAATGCAACTGTATTTTGCTTGCCCCTCGTGCTCTGCTCTCTTTCTCTCTCTCA 479
                      ********************** ************* ***********************

consensus_1489#0      CACACACTCTCTTCAGTTAATATATTGAATATGTATTAACCCTATGTAAACCCCGAAGCC 291
consensus_1489#1      CACACACTCTCTTCAGNTA-TATAT-GAATATGTATTAACC-TATGTAA-CCCCGAAGC- 534
                      **************** ** ***** *************** ******* ********* 

consensus_1489#0      TCAACATACTATGTTGANACTGTTCTGAAACACAGAACCTCCTAAAGGATAATGCGCCCA 351
consensus_1489#1      TCAACATACTTTGTTGAAACTGTTCTGAAACA--GAACCTCCTAAAGAT--ATGCG---- 586
                      ********** ****** **************  *************    *****    

consensus_1489#0      TTTACAGTAATTAAGCACAAATTTTAACACAACACAAACACAAACACCACACAGTTGTTA 411
consensus_1489#1      ------------------------------------------------------------
                                                                                  

consensus_1489#0      CATTTGAAGTCAAAGATAAAACAAAGGTACACGCTTAAATCAATTNTTAAGCACACTTGT 471
consensus_1489#1      ------------------------------------------------------------
                                                                                  

consensus_1489#0      ACTGGTANNACTATTTCCTTTAACAATAAGAGGTACAAGCGGGCGCTAATGGGTCTCTTT 531
consensus_1489#1      ------------------------------------------------------------
                                                                                  

consensus_1489#0      TACCGACATTTTCTCATACCTACAATTAACCCGGGGAAGCCGGCCGCCGGTTANCACGGT 591
consensus_1489#1      ------------------------------------------------------------
                                                                                  

consensus_1489#0      CATTAAACANTTGGNANCCACACCAACATGCANTGGCACGCAACGCANCGCNAACTTTCA 651
consensus_1489#1      ------------------------------------------------------------
                                                                                  

consensus_1489#0      CTCCTCTGGCGCACACGTCCCANATCCCTCGGGTAATAACCACCCAAACATTCAACCGCT 711
consensus_1489#1      ------------------------------------------------------------
                                                                                  

consensus_1489#0      TCCCAANAANCCAGCTGNTAGGCAGGGCAA 741
consensus_1489#1      ------------------------------