These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1493#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 886 fasta sequence [ATTCCGAGGTTAAGTGGAAAATTGAGGCTACGCTTTGCTTATTCCGGTTTTAAATGTACCACACATACGATCGAAAAAAGAAGAACACATAATCTTATAGCCAAGAGACAAATGTTGATGTTTTTAGCTGTTGATGATGATATCGCACCACGTGTTTGGCATGTTTTCTGTGGCGACTAGTACACTTCCCCGTGCGGTAGATGATAAATTAACAAAGCAAAAAACAATATTTAACTTAATCAGCGCACCTTCTACTACTACTACATATAACCTCTTTTAGCCCAGCTCATCATCTGTCTGCGGTACCCATTCTTATCGGCTATGCTGATAGAAAGTTAGCACACAGAAACTCCGGGACACTTATTACAACCAACCTTCTTAGCACACACAACGGCTGTCAGCTAAGGAACGTACACTACGCAAACTGCTCTGCAGCCACAATCTTCCATTAACCCAGCTCGGAGTAGGCACCGCGCACACACTTACCAGCAAACCTGCANTAACTCTNCTACTTCACTGCNATCTTCCAGGCTTTTACCAACCAAACCACCGAAATAATGGTACACGCGCGCGAAANGAGGCTTAAGCGACAAATTTCCCTTGCCAAATTATTACCTCAAATAACCGGGGCTCCGGGCACTTCCTCGTTTCCAGCGTGCGCACGCGGCCGCNTGGCACTTGCACGCGCNCAGCGNTGCTTTCACTCCCCCCCACCCCTCTGGCCCTGGCTTCCCCCCTCCCTGCNACCTGCTGNCTTGCTGCTNNCCTGGCCCCGACACCCGGCNGCACCCCGCNNGCCTACCCGCCTACCCGCGGCTTGACTTCCACCTAGCCCTGCTGGCTCCGCANCCGCTGNGGGGCTCTACTTGCCCNCNNCCCCGGCGGC] [+] EMBL AL692453 [ATTCCGAGGTTAAGTGGAAAATTGAGGCTACGCTTTGCTTATTCCGGTTTTAAATGTACCACACATACGATCGAAAAAAGAAGAACACATAATCTTATAGCCAAGAGACAAATGTTGATGTTTTTAGCTGTTGATGATGATATCGCACCACGTGTTTGGCATGTTTTCTGTGGCGACTAGTACACTTCCCCGTGCGGTAGATGATAAATTAACAAAGCAAAAAACAATATTTAACTTAATCAGCGCACCTTCTACTACTACTACATATAACCTCTTTTAGCCCAGCTCATCATCTGTCTGCGGTACCCATTCTTATCGGCTATGCTGATAGAAAGTTAGCACACAGAAACTCCGGGACACTTATTACAACCAACCTTCTTAGCACACACAACGGCTGTCAGCTAAGGAACGTACACTACGCAAACTGCTCTGCAGCCACAATCTTCCATTAACCCAGCTCGGAGTAGGCACCGCGCACACACTTACCAGCAAACCTGCANTAACTCTNCTACTTCACTGCNATCTTCCAGGCTTTTACCAACCAAACCACCGAAATAATGGTACACGCGCGCGAAANGAGGCTTAAGCGACAAATTTCCCTTGCCAAATTATTACCTCAAATAACCGGGGCTCCGGGCACTTCCTCGTTTCCAGCGTGCGCACGCGGCCGCNTGGCACTTGCACGCGCNCAGCGNTGCTTTCACTCCCCCCCACCCCTCTGGCCCTGGCTTCCCCCCTCCCTGCNACCTGCTGNCTTGCTGCTNNCCTGGCCCCGACACCCGGCNGCACCCCGCNNGCCTACCCGCCTACCCGCGGCTTGACTTCCACCTAGCCCTGCTGGCTCCGCANCCGCTGNGGGGCTCTACTTGCCCNCNNCCCCGGCGGC] consensusID : consensus_1493#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence [CGATACAGCATAAACACAGACACACACATACACACACTCACACATAATAATTACAATATATTAGAATGAAGAAAAATTTAAATGCGAACGGGGCTTCCACCTTCGGTTCTGTTTTTATACAAGATATGGCGGATTTTTCGATGGAGGCGCGCGCATTGGTGTGTTGAAAATGGATTAAAGAAGAGCGGGGGGAAAAACACATACCTACACACACACACATTTGCTTATTCCGTTTTAAATGTACCACATACGATCAAAAAAAAGGAAGAACACATAATCTTATAGCCAAGAGACAAATGTTGATGTTTTTAGCTGTTGATGATGATATCGTACCACATGTTTGGCATGTTTTCAGTGGCACTTTCAGTGCGGTA] [+] EMBL BX617156 [CGATACAGCATAAACACAGACACACACATACACACACTCACACATAATAATTACAATATATTAGAATGAAGAAAAATTTAAATGCGAACGGGGCTTCCACCTTCGGTTCTGTTTTTATACAAGATATGGCGGATTTTTCGATGGAGGCGCGCGCATTGGTGTGTTGAAAATGGATTAAAGAAGAGCGGGGGGAAAAACACATACCTACACACACACACATTTGCTTATTCCGTTTTAAATGTACCACATACGATCAAAAAAAAGGAAGAACACATAATCTTATAGCCAAGAGACAAATGTTGATGTTTTTAGCTGTTGATGATGATATCGTACCACATGTTTGGCATGTTTTCAGTGGCACTTTCAGTGCGGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1493#0 ATTCCGAGGTTAAGTGGAAAATTGAGGCTACGCTTTGCTTATTCCGGTTTTAAATGTACC 60 consensus_1493#1 ---------------------------CGATACAGCA-TAAACACAGACACACACATAC- 31 * * * * * * * * * *** consensus_1493#0 ACACATACGATCGAAAAAAGAAGAACACATAATCTTATAGCCAAGAGACAAATGTTGATG 120 consensus_1493#1 ACACACTCACACATAATAATTACAATATATTAGAATGAAGA-AAAATTTAAATGCGAACG 90 ***** * * ** ** * ** * ** * * ** ** * ***** * * consensus_1493#0 T--TTTTAGCTGTTGATGATGATATCGCACCACGTGTTTGGCATGTTTTCTGTGGCGACT 178 consensus_1493#1 GGGCTTCCACCTTCGGTTCTGTTTTTATACAAGATATGGCGGAT-TTTTCGATGGAGGC- 148 ** * * * * ** * * ** * * * * ** ***** *** * * consensus_1493#0 AGTACACTTCCCCGTGCGGTAGATG-ATAAATTAACAAAGCAAAAAACAATATTTAACTT 237 consensus_1493#1 -GCGCGCATTGGTGTGTTGAAAATGGATTAAAGAAGAGCGGGGGGAAAAACACATACCTA 207 * * * * *** * * *** ** ** ** * * ** ** * ** ** consensus_1493#0 AATCAGCGCACCTTCTACTACTACTACATATAACCTCTTTTAGCCCAGCTCATCATCTGT 297 consensus_1493#1 CACACACACACATT-TGCT--TATTCCGTTTTAAATGTACCACATACGATCAAAAAAAAG 264 * * *** ** * ** ** * * * * * * * * * *** * consensus_1493#0 CTGCGGTACCCATTCTTATCGGCTATGCTGATAGAAAGTTAGCACACAGAAACTCCGGGA 357 consensus_1493#1 GAAGAACACATAATCTTATAG------CCAAGAGACAA-----ATGTTGATGTTTTTAGC 313 ** * ****** * * * *** * * ** * * consensus_1493#0 CACTTATTACAACCAACCTTCTTAGCACACACAACGGCTGTCAGCTAAGGAACGTACACT 417 consensus_1493#1 TGTTGATGATGATA-----TCGTACCACATGTTTGGCATGTTTTCAGTGGCACTTTCAGT 368 * ** * * ** ** **** * *** * ** ** * ** * consensus_1493#0 ACGCAAACTGCTCTGCAGCCACAATCTTCCATTAACCCAGCTCGGAGTAGGCACCGCGCA 477 consensus_1493#1 GCGGTA------------------------------------------------------ 374 ** * consensus_1493#0 CACACTTACCAGCAAACCTGCANTAACTCTNCTACTTCACTGCNATCTTCCAGGCTTTTA 537 consensus_1493#1 ------------------------------------------------------------ consensus_1493#0 CCAACCAAACCACCGAAATAATGGTACACGCGCGCGAAANGAGGCTTAAGCGACAAATTT 597 consensus_1493#1 ------------------------------------------------------------ consensus_1493#0 CCCTTGCCAAATTATTACCTCAAATAACCGGGGCTCCGGGCACTTCCTCGTTTCCAGCGT 657 consensus_1493#1 ------------------------------------------------------------ consensus_1493#0 GCGCACGCGGCCGCNTGGCACTTGCACGCGCNCAGCGNTGCTTTCACTCCCCCCCACCCC 717 consensus_1493#1 ------------------------------------------------------------ consensus_1493#0 TCTGGCCCTGGCTTCCCCCCTCCCTGCNACCTGCTGNCTTGCTGCTNNCCTGGCCCCGAC 777 consensus_1493#1 ------------------------------------------------------------ consensus_1493#0 ACCCGGCNGCACCCCGCNNGCCTACCCGCCTACCCGCGGCTTGACTTCCACCTAGCCCTG 837 consensus_1493#1 ------------------------------------------------------------ consensus_1493#0 CTGGCTCCGCANCCGCTGNGGGGCTCTACTTGCCCNCNNCCCCGGCGGC 886 consensus_1493#1 ------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||