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Anopheles gambiae
cluster # 1493 cluster # 1493       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1493#0 length = 886 sequences # 1  
consensus_1493#1 length = 374 sequences # 1  

consensusID : consensus_1493#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 886
fasta sequence
                              [ATTCCGAGGTTAAGTGGAAAATTGAGGCTACGCTTTGCTTATTCCGGTTTTAAATGTACCACACATACGATCGAAAAAAGAAGAACACATAATCTTATAGCCAAGAGACAAATGTTGATGTTTTTAGCTGTTGATGATGATATCGCACCACGTGTTTGGCATGTTTTCTGTGGCGACTAGTACACTTCCCCGTGCGGTAGATGATAAATTAACAAAGCAAAAAACAATATTTAACTTAATCAGCGCACCTTCTACTACTACTACATATAACCTCTTTTAGCCCAGCTCATCATCTGTCTGCGGTACCCATTCTTATCGGCTATGCTGATAGAAAGTTAGCACACAGAAACTCCGGGACACTTATTACAACCAACCTTCTTAGCACACACAACGGCTGTCAGCTAAGGAACGTACACTACGCAAACTGCTCTGCAGCCACAATCTTCCATTAACCCAGCTCGGAGTAGGCACCGCGCACACACTTACCAGCAAACCTGCANTAACTCTNCTACTTCACTGCNATCTTCCAGGCTTTTACCAACCAAACCACCGAAATAATGGTACACGCGCGCGAAANGAGGCTTAAGCGACAAATTTCCCTTGCCAAATTATTACCTCAAATAACCGGGGCTCCGGGCACTTCCTCGTTTCCAGCGTGCGCACGCGGCCGCNTGGCACTTGCACGCGCNCAGCGNTGCTTTCACTCCCCCCCACCCCTCTGGCCCTGGCTTCCCCCCTCCCTGCNACCTGCTGNCTTGCTGCTNNCCTGGCCCCGACACCCGGCNGCACCCCGCNNGCCTACCCGCCTACCCGCGGCTTGACTTCCACCTAGCCCTGCTGGCTCCGCANCCGCTGNGGGGCTCTACTTGCCCNCNNCCCCGGCGGC]

[+] EMBL AL692453             [ATTCCGAGGTTAAGTGGAAAATTGAGGCTACGCTTTGCTTATTCCGGTTTTAAATGTACCACACATACGATCGAAAAAAGAAGAACACATAATCTTATAGCCAAGAGACAAATGTTGATGTTTTTAGCTGTTGATGATGATATCGCACCACGTGTTTGGCATGTTTTCTGTGGCGACTAGTACACTTCCCCGTGCGGTAGATGATAAATTAACAAAGCAAAAAACAATATTTAACTTAATCAGCGCACCTTCTACTACTACTACATATAACCTCTTTTAGCCCAGCTCATCATCTGTCTGCGGTACCCATTCTTATCGGCTATGCTGATAGAAAGTTAGCACACAGAAACTCCGGGACACTTATTACAACCAACCTTCTTAGCACACACAACGGCTGTCAGCTAAGGAACGTACACTACGCAAACTGCTCTGCAGCCACAATCTTCCATTAACCCAGCTCGGAGTAGGCACCGCGCACACACTTACCAGCAAACCTGCANTAACTCTNCTACTTCACTGCNATCTTCCAGGCTTTTACCAACCAAACCACCGAAATAATGGTACACGCGCGCGAAANGAGGCTTAAGCGACAAATTTCCCTTGCCAAATTATTACCTCAAATAACCGGGGCTCCGGGCACTTCCTCGTTTCCAGCGTGCGCACGCGGCCGCNTGGCACTTGCACGCGCNCAGCGNTGCTTTCACTCCCCCCCACCCCTCTGGCCCTGGCTTCCCCCCTCCCTGCNACCTGCTGNCTTGCTGCTNNCCTGGCCCCGACACCCGGCNGCACCCCGCNNGCCTACCCGCCTACCCGCGGCTTGACTTCCACCTAGCCCTGCTGGCTCCGCANCCGCTGNGGGGCTCTACTTGCCCNCNNCCCCGGCGGC]


>consensus_1493#0 ATTCCGAGGTTAAGTGGAAAATTGAGGCTACGCTTTGCTTATTCCGGTTTTAAATGTACC ACACATACGATCGAAAAAAGAAGAACACATAATCTTATAGCCAAGAGACAAATGTTGATG TTTTTAGCTGTTGATGATGATATCGCACCACGTGTTTGGCATGTTTTCTGTGGCGACTAG TACACTTCCCCGTGCGGTAGATGATAAATTAACAAAGCAAAAAACAATATTTAACTTAAT CAGCGCACCTTCTACTACTACTACATATAACCTCTTTTAGCCCAGCTCATCATCTGTCTG CGGTACCCATTCTTATCGGCTATGCTGATAGAAAGTTAGCACACAGAAACTCCGGGACAC TTATTACAACCAACCTTCTTAGCACACACAACGGCTGTCAGCTAAGGAACGTACACTACG CAAACTGCTCTGCAGCCACAATCTTCCATTAACCCAGCTCGGAGTAGGCACCGCGCACAC ACTTACCAGCAAACCTGCANTAACTCTNCTACTTCACTGCNATCTTCCAGGCTTTTACCA ACCAAACCACCGAAATAATGGTACACGCGCGCGAAANGAGGCTTAAGCGACAAATTTCCC TTGCCAAATTATTACCTCAAATAACCGGGGCTCCGGGCACTTCCTCGTTTCCAGCGTGCG CACGCGGCCGCNTGGCACTTGCACGCGCNCAGCGNTGCTTTCACTCCCCCCCACCCCTCT GGCCCTGGCTTCCCCCCTCCCTGCNACCTGCTGNCTTGCTGCTNNCCTGGCCCCGACACC CGGCNGCACCCCGCNNGCCTACCCGCCTACCCGCGGCTTGACTTCCACCTAGCCCTGCTG GCTCCGCANCCGCTGNGGGGCTCTACTTGCCCNCNNCCCCGGCGGC



consensusID : consensus_1493#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 374
fasta sequence
                              [CGATACAGCATAAACACAGACACACACATACACACACTCACACATAATAATTACAATATATTAGAATGAAGAAAAATTTAAATGCGAACGGGGCTTCCACCTTCGGTTCTGTTTTTATACAAGATATGGCGGATTTTTCGATGGAGGCGCGCGCATTGGTGTGTTGAAAATGGATTAAAGAAGAGCGGGGGGAAAAACACATACCTACACACACACACATTTGCTTATTCCGTTTTAAATGTACCACATACGATCAAAAAAAAGGAAGAACACATAATCTTATAGCCAAGAGACAAATGTTGATGTTTTTAGCTGTTGATGATGATATCGTACCACATGTTTGGCATGTTTTCAGTGGCACTTTCAGTGCGGTA]

[+] EMBL BX617156             [CGATACAGCATAAACACAGACACACACATACACACACTCACACATAATAATTACAATATATTAGAATGAAGAAAAATTTAAATGCGAACGGGGCTTCCACCTTCGGTTCTGTTTTTATACAAGATATGGCGGATTTTTCGATGGAGGCGCGCGCATTGGTGTGTTGAAAATGGATTAAAGAAGAGCGGGGGGAAAAACACATACCTACACACACACACATTTGCTTATTCCGTTTTAAATGTACCACATACGATCAAAAAAAAGGAAGAACACATAATCTTATAGCCAAGAGACAAATGTTGATGTTTTTAGCTGTTGATGATGATATCGTACCACATGTTTGGCATGTTTTCAGTGGCACTTTCAGTGCGGTA]


>consensus_1493#1 CGATACAGCATAAACACAGACACACACATACACACACTCACACATAATAATTACAATATA TTAGAATGAAGAAAAATTTAAATGCGAACGGGGCTTCCACCTTCGGTTCTGTTTTTATAC AAGATATGGCGGATTTTTCGATGGAGGCGCGCGCATTGGTGTGTTGAAAATGGATTAAAG AAGAGCGGGGGGAAAAACACATACCTACACACACACACATTTGCTTATTCCGTTTTAAAT GTACCACATACGATCAAAAAAAAGGAAGAACACATAATCTTATAGCCAAGAGACAAATGT TGATGTTTTTAGCTGTTGATGATGATATCGTACCACATGTTTGGCATGTTTTCAGTGGCA CTTTCAGTGCGGTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1493#0      ATTCCGAGGTTAAGTGGAAAATTGAGGCTACGCTTTGCTTATTCCGGTTTTAAATGTACC 60
consensus_1493#1      ---------------------------CGATACAGCA-TAAACACAGACACACACATAC- 31
                                                 * *  *     * *   * *    * *  *** 

consensus_1493#0      ACACATACGATCGAAAAAAGAAGAACACATAATCTTATAGCCAAGAGACAAATGTTGATG 120
consensus_1493#1      ACACACTCACACATAATAATTACAATATATTAGAATGAAGA-AAAATTTAAATGCGAACG 90
                      *****  *   *  ** **  * ** * ** *   *  **  ** *   *****   * *

consensus_1493#0      T--TTTTAGCTGTTGATGATGATATCGCACCACGTGTTTGGCATGTTTTCTGTGGCGACT 178
consensus_1493#1      GGGCTTCCACCTTCGGTTCTGTTTTTATACAAGATATGGCGGAT-TTTTCGATGGAGGC- 148
                          **   *  * * *  ** * *   ** *  * *   * ** *****  *** * * 

consensus_1493#0      AGTACACTTCCCCGTGCGGTAGATG-ATAAATTAACAAAGCAAAAAACAATATTTAACTT 237
consensus_1493#1      -GCGCGCATTGGTGTGTTGAAAATGGATTAAAGAAGAGCGGGGGGAAAAACACATACCTA 207
                       *  * * *    ***  * * *** ** **  ** *  *     ** ** *  ** ** 

consensus_1493#0      AATCAGCGCACCTTCTACTACTACTACATATAACCTCTTTTAGCCCAGCTCATCATCTGT 297
consensus_1493#1      CACACACACACATT-TGCT--TATTCCGTTTTAAATGTACCACATACGATCAAAAAAAAG 264
                       *    * *** ** * **  ** * * * * *  * *   *     * ***  *     

consensus_1493#0      CTGCGGTACCCATTCTTATCGGCTATGCTGATAGAAAGTTAGCACACAGAAACTCCGGGA 357
consensus_1493#1      GAAGAACACATAATCTTATAG------CCAAGAGACAA-----ATGTTGATGTTTTTAGC 313
                             **  * ****** *      *  * *** *      *    **   *    * 

consensus_1493#0      CACTTATTACAACCAACCTTCTTAGCACACACAACGGCTGTCAGCTAAGGAACGTACACT 417
consensus_1493#1      TGTTGATGATGATA-----TCGTACCACATGTTTGGCATGTTTTCAGTGGCACTTTCAGT 368
                         * ** *  *       ** ** ****      *  ***   *   ** ** * ** *

consensus_1493#0      ACGCAAACTGCTCTGCAGCCACAATCTTCCATTAACCCAGCTCGGAGTAGGCACCGCGCA 477
consensus_1493#1      GCGGTA------------------------------------------------------ 374
                       **  *                                                      

consensus_1493#0      CACACTTACCAGCAAACCTGCANTAACTCTNCTACTTCACTGCNATCTTCCAGGCTTTTA 537
consensus_1493#1      ------------------------------------------------------------
                                                                                  

consensus_1493#0      CCAACCAAACCACCGAAATAATGGTACACGCGCGCGAAANGAGGCTTAAGCGACAAATTT 597
consensus_1493#1      ------------------------------------------------------------
                                                                                  

consensus_1493#0      CCCTTGCCAAATTATTACCTCAAATAACCGGGGCTCCGGGCACTTCCTCGTTTCCAGCGT 657
consensus_1493#1      ------------------------------------------------------------
                                                                                  

consensus_1493#0      GCGCACGCGGCCGCNTGGCACTTGCACGCGCNCAGCGNTGCTTTCACTCCCCCCCACCCC 717
consensus_1493#1      ------------------------------------------------------------
                                                                                  

consensus_1493#0      TCTGGCCCTGGCTTCCCCCCTCCCTGCNACCTGCTGNCTTGCTGCTNNCCTGGCCCCGAC 777
consensus_1493#1      ------------------------------------------------------------
                                                                                  

consensus_1493#0      ACCCGGCNGCACCCCGCNNGCCTACCCGCCTACCCGCGGCTTGACTTCCACCTAGCCCTG 837
consensus_1493#1      ------------------------------------------------------------
                                                                                  

consensus_1493#0      CTGGCTCCGCANCCGCTGNGGGGCTCTACTTGCCCNCNNCCCCGGCGGC 886
consensus_1493#1      -------------------------------------------------
                                                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)