These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1497#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence [GCCAGAATCGCCACGAGNTTAAAAAGCACGACGAGTTCATGCCGGACCATATCGCGGACTACGAGGAGCGGGAACGGATGGCGCTGCTGGGGCAGCGCGATTTTCTCATACGCACCTGCGGGCTAGTACAGAGCATATACATCAACTTTCATCGGAACAAGCTGCTCACGGATTCGGACCGACGCAAGTATAAGGAAACGTACGCGAAGCTGATCACCAACGAGCATCTGCCACAGTCCGAGTCGTCCCCACAGTCCAACCATACGTTTTCGACCATCCACAGTACCAGCACGGTGGCCGGTTCGACGTCAACCGGCGGTTACCATGGCTACGGTGGAGTGACAGCCGGTAGCAACAACAACAACAGCAACACCACAACCTGCCTGCCCAGCCTTGGCACTGCGCAGCAACAGCAGCAGCAGCAGCACTCGTCCGGCTCCTCCTCCTCCACAGAACCAGCTGCAGAAAGCTGCAGATCAAAAGCTTGGTCGCTGATCAACAGACCGTCAGCCTCGTGGGACTGCGAGTGCACGGGAGGTGCCGGTACAGGAGCCGGGCCAACCGGAGTACCNGTAACCTGCTAGACGGACACAACCGAACCAAATAGCCGGAGGAACCAAGTACGAC] [+] EMBL BX467262 [GCCAGAATCGCCACGAGNTTAAAAAGCACGACGAGTTCATGCCGGACCATATCGCGGACTACGAGGAGCGGGAACGGATGGCGCTGCTGGGGCAGCGCGATTTTCTCATACGCACCTGCGGGCTAGTACAGAGCATATACATCAACTTTCATCGGAACAAGCTGCTCACGGATTCGGACCGACGCAAGTATAAGGAAACGTACGCGAAGCTGATCACCAACGAGCATCTGCCACAGTCCGAGTCGTCCCCACAGTCCAACCATACGTTTTCGACCATCCACAGTACCAGCACGGTGGCCGGTTCGACGTCAACCGGCGGTTACCATGGCTACGGTGGAGTGACAGCCGGTAGCAACAACAACAACAGCAACACCACAACCTGCCTGCCCAGCCTTGGCACTGCGCAGCAACAGCAGCAGCAGCAGCACTCGTCCGGCTCCTCCTCCTCCACAGAACCAGCTGCAGAAAGCTGCAGATCAAAAGCTTGGTCGCTGATCAACAGACCGTCAGCCTCGTGGGACTGCGAGTGCACGGGAGGTGCCGGTACAGGAGCCGGGCCAACCGGAGTACCNGTAACCTGCTAGACGGACACAACCGAACCAAATAGCCGGAGGAACCAAGTACGAC] consensusID : consensus_1497#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence [CCGCGGACGCGTGGGCGCATCTGGGCGGGTATCGGCGGATCCTGCCCGCGCCCGGCGACCCCAACCGCTACCTGCAGTTCTTCGTCGCCCAGAGTCAGGCGTCGGTGTACAACGAGACGGCGGCCAGCAAGCGCCGGGAGGAGTGTGCCAAGCAGCAGCGCATCGAGCTGGAGGAGCGCTTCCGCCTGAACCAGGCGATCCTGCACAAGCACAATCCGAAGCTGCAGAAGGGCGGCGGGCTGGGTGCGGGCGAGGATGCGGCCGGCGGGAATGGGGCGGGCGGTGGTGGTGCCGGCGGGATCGGGGCGGGCAAGAAGAAGCTCCGCAAGCGCAAGGTCGCGAAGGTGGCGAAAAAGCACGACGAGTTCATGCCGGACCAGATCGCGGACTACGAGGAGCGGGAACGGATGGCGCTGCTGGGGCAGCGCGATTTTCTCATACGCACCTGCGGGCTAGTACAGAGCATATACATCAACTTTCATCGGAACAAGCTGCTCACGGATTCGGACCGACGCAAGTATAAGGAAACGTACGCGAAGCTGATCACCAACGAGCATCTGCCACAGTCCGAGTCGTCCCCACAGTCCA] [+] EMBL BM648867 [CCGCGGACGCGTGGGCGCATCTGGGCGGGTATCGGCGGATCCTGCCCGCGCCCGGCGACCCCAACCGCTACCTGCAGTTCTTCGTCGCCCAGAGTCAGGCGTCGGTGTACAACGAGACGGCGGCCAGCAAGCGCCGGGAGGAGTGTGCCAAGCAGCAGCGCATCGAGCTGGAGGAGCGCTTCCGCCTGAACCAGGCGATCCTGCACAAGCACAATCCGAAGCTGCAGAAGGGCGGCGGGCTGGGTGCGGGCGAGGATGCGGCCGGCGGGAATGGGGCGGGCGGTGGTGGTGCCGGCGGGATCGGGGCGGGCAAGAAGAAGCTCCGCAAGCGCAAGGTCGCGAAGGTGGCGAAAAAGCACGACGAGTTCATGCCGGACCAGATCGCGGACTACGAGGAGCGGGAACGGATGGCGCTGCTGGGGCAGCGCGATTTTCTCATACGCACCTGCGGGCTAGTACAGAGCATATACATCAACTTTCATCGGAACAAGCTGCTCACGGATTCGGACCGACGCAAGTATAAGGAAACGTACGCGAAGCTGATCACCAACGAGCATCTGCCACAGTCCGAGTCGTCCCCACAGTCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1497#0 GCCAGAATCGCC-ACGAGNTTAAAAAGCACGACGAGTTCATGCCGGACCATATCGCGGAC 59 consensus_1497#1 -------CCGCGGACGCGTGGGCGCATCTGGGCGGGTATCGGCGGATCCTGCCCGCGCCC 53 *** *** * * * * ** ** ** * ** **** * consensus_1497#0 TACGAGGAGCGGGAACGGATGGCGCTGCTGGGGCAGCGCGATTTTCTCATACGCAC-CTG 118 consensus_1497#1 GGCGACCC-CAACCGCTACCTGCAGTTCTTCGTCGCCCAGAGTCAGGCGTCGGTGTACAA 112 *** * * ** * ** * * * ** * * * * * consensus_1497#0 CGGGCTAGTACAGAGCATATACATCAACTTTCATCGGAACAAGCTGCTCACGGATTCGGA 178 consensus_1497#1 CGAGACGGCGGCCAGCAAGCGCCGGGAGGAGTGTGCCAAGCAGCAGCGCATCGAGCTGGA 172 ** * * **** * * * ** *** ** ** ** *** consensus_1497#0 CCGACGCAAGTATAAGGAAACGTACGCGAAGCTGATCACCAACGAGCATCTGCCACAGTC 238 consensus_1497#1 GGAGCGCTTCCGCCTGAA---CCAGGCGATCCTGCACAAGCACAATCCGAAGCTGCAGAA 229 *** * * * **** *** ** ** * * ** *** consensus_1497#0 CGAGTCGTCCCCACAGTCCAACCATACGTTTTCGACCATCCACAGTACCA-GCACGGTGG 297 consensus_1497#1 -GGGCGGCGGGCTGGGTGCGGGCGAGGATG--CGGCCGGCGGGAATGGGGCGGGCGGTGG 286 * * * * ** * * * ** ** * * * * ****** consensus_1497#0 CCGGTTCGACGTCAACCGG-CGGTTACCATGGCTACGGTGGAGTGACAGCCGGTAGCAAC 356 consensus_1497#1 TGGTGCCGGCGGGATCGGGGCGGGCAAGAAGAAGCTCCGCAAGCGCAAGGTCGCGAAGGT 346 * ** ** * * ** *** * * * ** * ** * consensus_1497#0 AACAACAACAGCAACACCACAACCTGCCTGCCCAGCCTTGGCACTGCGCAGCAACAGCAG 416 consensus_1497#1 GGCGA-AAAAGCACGACGAGTTCATGCCGGACCAGATCGCGGACTACG-AGGAGCGGGAA 404 * * ** **** ** * * **** * **** * *** ** ** * * * * consensus_1497#0 CAGCAGCAGCACTCGTCCGGCTCCTCCTCCTCCACAGAACCAGCTGCAGAAAGCTGCAGA 476 consensus_1497#1 CGG--ATGGCGCTGCTGGGGCAGCGCGATTTTCTCATACGCACCTGCGGGCTAGTACAGA 462 * * ** ** * *** * * * * ** * ** **** * * **** consensus_1497#0 TCAAAAGCTTGGTCGCTGATC--AACAGACCGTCAGCCTCGTGGGACTGCGAGTGCACGG 534 consensus_1497#1 GCATATACATCAACTTTCATCGGAACAAGCTGCTCACGGATTCGGACCG-ACGCAAGTAT 521 ** * * * * * *** **** * * * * **** * * consensus_1497#0 GAGGTGCCGGTACAGGAGCCGGGCCAACCG-GAGTACCNGTAACCTGCTAGACGGACACA 593 consensus_1497#1 AAGGAAACG-TACGCGAAGCTGATCACCAACGAGCATCTGCCACAGTCCGAGTCGTCCCC 580 *** ** *** ** * * ** * *** * * * ** * * * * consensus_1497#0 ACCGAACCAAATAGCCGGAGGAACCAAGTACGAC 627 consensus_1497#1 ACAGT-CCA------------------------- 588 ** * *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||