cluster # 1500

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1500 cluster # 1500 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1500#0 length = 986 sequences # 1

consensus_1500#1 length = 496 sequences # 1

consensusID : consensus_1500#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 986
fasta sequence

                              [CAGAATCCCCCGAGGTTAATAACACTTCACTTACACTCCAAAATATTAAACGCTAAAAATAATTAAACCGTCACGTAATGAAATAAAAAAAAAAACTATACAATAATATTTCAATCAAAACCCTAAACAATAGCTACATACACAGCAAATACACAGCGTAGCAATATAATCAACGCAACAACAAACAAACAAAGAAAACACATTTACTTTCATACTACGTAAGCGAGCGAAAACAGGATGCGGTNTTACTTAAGCCGGCCGAAACAATACAAACGCGTACGACCAAGGANAGTGATGAGTGGAGGACNNCNCATGTAAGAAACNACACAGTACGATCTTACTCCGCTCTTATACCAGTATCTATTATNCAGACCTACTATACCCTACACCCTGAACAGNAAAAAACCAACNCCAACAGCCTNATAATCGGACTAGAAGTCAGGAGCAGAANANNNNTTGAAAANCANATGGTCAACTTAGGCTAANACAACCCATTCAAGCTGCAACCCGGCCACTCGGTANACTGGAACATACCTTCAACAAATGCACACAGAAGAAACCACACGCAGGGCTCACACACCNGAACACTCNAACACCACAACACACGNCACCAANNCAACACTACCTTCCGAACACANAGACGGGACTAACGNAGGTTAGTNGGTTAAGCACGGATATAGNNTTAATTACACCACAGTGGGGGCCCGTCACACNCTCGGGANCTCAGTCGGCAAANGANATCCCACNACCCACCAACCNGAAGACAANTTGCGAGCACATCAAAGTGACCACGCCGCCNGCNCGACANCCNGAACGCAACCCCGGGGTCAGGCANCCCGGCGCCAACGGGGGNGGAACAGCGCGGCTGGTNAGNNTACCGTTACCNCAACCAGGGGTGGTCGACACGTGGCAGATGGAAAGTGCGCACCCTGGNGCCCCANCCACCATGCACCAACGACACTGACNCCCACCTCGGCNGANTACGC]

[+] EMBL AL692473             [CAGAATCCCCCGAGGTTAATAACACTTCACTTACACTCCAAAATATTAAACGCTAAAAATAATTAAACCGTCACGTAATGAAATAAAAAAAAAAACTATACAATAATATTTCAATCAAAACCCTAAACAATAGCTACATACACAGCAAATACACAGCGTAGCAATATAATCAACGCAACAACAAACAAACAAAGAAAACACATTTACTTTCATACTACGTAAGCGAGCGAAAACAGGATGCGGTNTTACTTAAGCCGGCCGAAACAATACAAACGCGTACGACCAAGGANAGTGATGAGTGGAGGACNNCNCATGTAAGAAACNACACAGTACGATCTTACTCCGCTCTTATACCAGTATCTATTATNCAGACCTACTATACCCTACACCCTGAACAGNAAAAAACCAACNCCAACAGCCTNATAATCGGACTAGAAGTCAGGAGCAGAANANNNNTTGAAAANCANATGGTCAACTTAGGCTAANACAACCCATTCAAGCTGCAACCCGGCCACTCGGTANACTGGAACATACCTTCAACAAATGCACACAGAAGAAACCACACGCAGGGCTCACACACCNGAACACTCNAACACCACAACACACGNCACCAANNCAACACTACCTTCCGAACACANAGACGGGACTAACGNAGGTTAGTNGGTTAAGCACGGATATAGNNTTAATTACACCACAGTGGGGGCCCGTCACACNCTCGGGANCTCAGTCGGCAAANGANATCCCACNACCCACCAACCNGAAGACAANTTGCGAGCACATCAAAGTGACCACGCCGCCNGCNCGACANCCNGAACGCAACCCCGGGGTCAGGCANCCCGGCGCCAACGGGGGNGGAACAGCGCGGCTGGTNAGNNTACCGTTACCNCAACCAGGGGTGGTCGACACGTGGCAGATGGAAAGTGCGCACCCTGGNGCCCCANCCACCATGCACCAACGACACTGACNCCCACCTCGGCNGANTACGC]




>consensus_1500#0
CAGAATCCCCCGAGGTTAATAACACTTCACTTACACTCCAAAATATTAAACGCTAAAAAT
AATTAAACCGTCACGTAATGAAATAAAAAAAAAAACTATACAATAATATTTCAATCAAAA
CCCTAAACAATAGCTACATACACAGCAAATACACAGCGTAGCAATATAATCAACGCAACA
ACAAACAAACAAAGAAAACACATTTACTTTCATACTACGTAAGCGAGCGAAAACAGGATG
CGGTNTTACTTAAGCCGGCCGAAACAATACAAACGCGTACGACCAAGGANAGTGATGAGT
GGAGGACNNCNCATGTAAGAAACNACACAGTACGATCTTACTCCGCTCTTATACCAGTAT
CTATTATNCAGACCTACTATACCCTACACCCTGAACAGNAAAAAACCAACNCCAACAGCC
TNATAATCGGACTAGAAGTCAGGAGCAGAANANNNNTTGAAAANCANATGGTCAACTTAG
GCTAANACAACCCATTCAAGCTGCAACCCGGCCACTCGGTANACTGGAACATACCTTCAA
CAAATGCACACAGAAGAAACCACACGCAGGGCTCACACACCNGAACACTCNAACACCACA
ACACACGNCACCAANNCAACACTACCTTCCGAACACANAGACGGGACTAACGNAGGTTAG
TNGGTTAAGCACGGATATAGNNTTAATTACACCACAGTGGGGGCCCGTCACACNCTCGGG
ANCTCAGTCGGCAAANGANATCCCACNACCCACCAACCNGAAGACAANTTGCGAGCACAT
CAAAGTGACCACGCCGCCNGCNCGACANCCNGAACGCAACCCCGGGGTCAGGCANCCCGG
CGCCAACGGGGGNGGAACAGCGCGGCTGGTNAGNNTACCGTTACCNCAACCAGGGGTGGT
CGACACGTGGCAGATGGAAAGTGCGCACCCTGGNGCCCCANCCACCATGCACCAACGACA
CTGACNCCCACCTCGGCNGANTACGC

consensusID : consensus_1500#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 496
fasta sequence

                              [CGAGGGGTTTTTAAGTTTAACCCAAGGCCAATTTGGAAAAAACCAAACAAGGCAAACCCAACAAAACCTCCGGTCCAATAACACTTCACTTACAATCAAAAATACCTTTTAAACGCTAAAAATAATTAAACCGTCACGTAACGAAACAAAAAAAAATCTATACAATAATATTTCAATCAAAACCCTAAACAATAGCTACATACACAGCGAATACACAGCGTAGCAATATAATCAACGCAACAACAAACAAACAAAGAAAACACATTTACTTTCATACTACGTAAGCGAACGAAAACAGGATGCGGTTTACTTAAGCCGGCCGAAACAATACAAACGGCGTACGACAAGGAAAGTGATGAGTGGAGGAAAAAATGTAAGAAACACACAGTACGATCTACTCCGCTCTTTCCAGTTCTTTTTCAGACCCTTCCCTACCACTGAAAGAAAAACCAACCCAACACCTATAATCGGACTAAAGTCAGAGCAGAAAAATGAA]

[+] EMBL AL932792             [CGAGGGGTTTTTAAGTTTAACCCAAGGCCAATTTGGAAAAAACCAAACAAGGCAAACCCAACAAAACCTCCGGTCCAATAACACTTCACTTACAATCAAAAATACCTTTTAAACGCTAAAAATAATTAAACCGTCACGTAACGAAACAAAAAAAAATCTATACAATAATATTTCAATCAAAACCCTAAACAATAGCTACATACACAGCGAATACACAGCGTAGCAATATAATCAACGCAACAACAAACAAACAAAGAAAACACATTTACTTTCATACTACGTAAGCGAACGAAAACAGGATGCGGTTTACTTAAGCCGGCCGAAACAATACAAACGGCGTACGACAAGGAAAGTGATGAGTGGAGGAAAAAATGTAAGAAACACACAGTACGATCTACTCCGCTCTTTCCAGTTCTTTTTCAGACCCTTCCCTACCACTGAAAGAAAAACCAACCCAACACCTATAATCGGACTAAAGTCAGAGCAGAAAAATGAA]




>consensus_1500#1
CGAGGGGTTTTTAAGTTTAACCCAAGGCCAATTTGGAAAAAACCAAACAAGGCAAACCCA
ACAAAACCTCCGGTCCAATAACACTTCACTTACAATCAAAAATACCTTTTAAACGCTAAA
AATAATTAAACCGTCACGTAACGAAACAAAAAAAAATCTATACAATAATATTTCAATCAA
AACCCTAAACAATAGCTACATACACAGCGAATACACAGCGTAGCAATATAATCAACGCAA
CAACAAACAAACAAAGAAAACACATTTACTTTCATACTACGTAAGCGAACGAAAACAGGA
TGCGGTTTACTTAAGCCGGCCGAAACAATACAAACGGCGTACGACAAGGAAAGTGATGAG
TGGAGGAAAAAATGTAAGAAACACACAGTACGATCTACTCCGCTCTTTCCAGTTCTTTTT
CAGACCCTTCCCTACCACTGAAAGAAAAACCAACCCAACACCTATAATCGGACTAAAGTC
AGAGCAGAAAAATGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1500#0      -----------------------------------------------------------C 1
consensus_1500#1      CGAGGGGTTTTTAAGTTTAACCCAAGGCCAATTTGGAAAAAACCAAACAAGGCAAACCCA 60
                                                                                  

consensus_1500#0      AGAATCCCCCGAGGTTAATAACACTTCACTTACACTCCAAAATA----TTAAACGCTAAA 57
consensus_1500#1      ACAAAACCTCCGGTCCAATAACACTTCACTTACAATCAAAAATACCTTTTAAACGCTAAA 120
                      * **  ** *  *   ****************** ** ******    ************

consensus_1500#0      AATAATTAAACCGTCACGTAATGAAATAAAAAAAAAAACTATACAATAATATTTCAATCA 117
consensus_1500#1      AATAATTAAACCGTCACGTAACGAAACAAAAAAAAAT-CTATACAATAATATTTCAATCA 179
                      ********************* **** *********  **********************

consensus_1500#0      AAACCCTAAACAATAGCTACATACACAGCAAATACACAGCGTAGCAATATAATCAACGCA 177
consensus_1500#1      AAACCCTAAACAATAGCTACATACACAGCGAATACACAGCGTAGCAATATAATCAACGCA 239
                      ***************************** ******************************

consensus_1500#0      ACAACAAACAAACAAAGAAAACACATTTACTTTCATACTACGTAAGCGAGCGAAAACAGG 237
consensus_1500#1      ACAACAAACAAACAAAGAAAACACATTTACTTTCATACTACGTAAGCGAACGAAAACAGG 299
                      ************************************************* **********

consensus_1500#0      ATGCGGTNTTACTTAAGCCGGCCGAAACAATACAAACG-CGTACGACCAAGGANAGTGAT 296
consensus_1500#1      ATGCGGTTT-ACTTAAGCCGGCCGAAACAATACAAACGGCGTACGAC-AAGGAAAGTGAT 357
                      ******* * **************************** ******** ***** ******

consensus_1500#0      GAGTGGAGGACNNCNCATGTAAGAAACNACACAGTACGATCTTACTCCGCTCTTATACCA 356
consensus_1500#1      GAGTGGAGG--AAAAAATGTAAGAAACA-CACAGTACGATCT-ACTCCGCTCTTT--CCA 411
                      *********       ***********  ************* ***********   ***

consensus_1500#0      GTATCTATTATNCAGACCTACTATACCCTACACCCTGAACAGNAAAAAACCAACNCCAAC 416
consensus_1500#1      GT---TCTTTTTCAGACCC----TTCCCTAC-CACTGAA---AGAAAAACCAACCC-AAC 459
                      **   * ** * ******     * ****** * *****     ********** * ***

consensus_1500#0      AGCCTNATAATCGGACTAGAAGTCAGGAGCAGAANANNNNTTGAAAANCANATGGTCAAC 476
consensus_1500#1      A--CCTATAATCGGACTA-AAGTCAG-AGCAGAAAAATGAA------------------- 496
                      *  *  ************ ******* ******* *                        

consensus_1500#0      TTAGGCTAANACAACCCATTCAAGCTGCAACCCGGCCACTCGGTANACTGGAACATACCT 536
consensus_1500#1      ------------------------------------------------------------
                                                                                  

consensus_1500#0      TCAACAAATGCACACAGAAGAAACCACACGCAGGGCTCACACACCNGAACACTCNAACAC 596
consensus_1500#1      ------------------------------------------------------------
                                                                                  

consensus_1500#0      CACAACACACGNCACCAANNCAACACTACCTTCCGAACACANAGACGGGACTAACGNAGG 656
consensus_1500#1      ------------------------------------------------------------
                                                                                  

consensus_1500#0      TTAGTNGGTTAAGCACGGATATAGNNTTAATTACACCACAGTGGGGGCCCGTCACACNCT 716
consensus_1500#1      ------------------------------------------------------------
                                                                                  

consensus_1500#0      CGGGANCTCAGTCGGCAAANGANATCCCACNACCCACCAACCNGAAGACAANTTGCGAGC 776
consensus_1500#1      ------------------------------------------------------------
                                                                                  

consensus_1500#0      ACATCAAAGTGACCACGCCGCCNGCNCGACANCCNGAACGCAACCCCGGGGTCAGGCANC 836
consensus_1500#1      ------------------------------------------------------------
                                                                                  

consensus_1500#0      CCGGCGCCAACGGGGGNGGAACAGCGCGGCTGGTNAGNNTACCGTTACCNCAACCAGGGG 896
consensus_1500#1      ------------------------------------------------------------
                                                                                  

consensus_1500#0      TGGTCGACACGTGGCAGATGGAAAGTGCGCACCCTGGNGCCCCANCCACCATGCACCAAC 956
consensus_1500#1      ------------------------------------------------------------
                                                                                  

consensus_1500#0      GACACTGACNCCCACCTCGGCNGANTACGC 986
consensus_1500#1      ------------------------------