These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1501#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence [CCGGCACCGTCGTTTAATTGCTAAAAGCCCCAATCGGTTGGGTTTTGGCTGCCAATTTGTGCCACAAAACCGTTGCAAGCCACAGTGGTGCAGTACAACAATCAAACGCAGCAATCAAACAGTGTGCTTCGATCAAACCACCACATCCCGCAGCAGAGCATCACGATTACTGTGAAATGCACGACACCGTTGGTCGCCTGCCCATCTTTCTGCTGCTGCTGTTACATCCGGAAATGAAGATGCACCACTGAGAGACGTACTCGTCCAGCTAACGTACCGGCGCAAACGAACGCTTTTTTTTTTTAATTCTGTTTGGTTTTGCTGTTGTCTAAATTAAGCAGCGAAATATCGAGAGAAGAAAGCTTAATCAGCGAATCAGCATTACCCGCCGCGTTGCGATGGGATTCGCACGAAGGGATGCCGTCGTCGCAATGCTGCTTATAATGGGAGTAACCGTGCCGGAGCTGCCCCTGCCGGCGGCGATGGCGCGCATCGTGGACGACACGGTGGCCGGCAGCAACGTTCTGTTCACCGACGCACCGCAACTGCTGTCGCAGGCGCTCGATCATACTACGCCGATGCATATGGTCGCTGTCGGAGAGCCACCGCTACCGGTAGATGCTGTGGGAGGAGAAGGAGCAGATGGGTGGTGGCGGTTTCAATCCAGCTAGCGATCATCAACCGGG] [+] EMBL BM609395 [CCGGCACCGTCGTTTAATTGCTAAAAGCCCCAATCGGTTGGGTTTTGGCTGCCAATTTGTGCCACAAAACCGTTGCAAGCCACAGTGGTGCAGTACAACAATCAAACGCAGCAATCAAACAGTGTGCTTCGATCAAACCACCACATCCCGCAGCAGAGCATCACGATTACTGTGAAATGCACGACACCGTTGGTCGCCTGCCCATCTTTCTGCTGCTGCTGTTACATCCGGAAATGAAGATGCACCACTGAGAGACGTACTCGTCCAGCTAACGTACCGGCGCAAACGAACGCTTTTTTTTTTTAATTCTGTTTGGTTTTGCTGTTGTCTAAATTAAGCAGCGAAATATCGAGAGAAGAAAGCTTAATCAGCGAATCAGCATTACCCGCCGCGTTGCGATGGGATTCGCACGAAGGGATGCCGTCGTCGCAATGCTGCTTATAATGGGAGTAACCGTGCCGGAGCTGCCCCTGCCGGCGGCGATGGCGCGCATCGTGGACGACACGGTGGCCGGCAGCAACGTTCTGTTCACCGACGCACCGCAACTGCTGTCGCAGGCGCTCGATCATACTACGCCGATGCATATGGTCGCTGTCGGAGAGCCACCGCTACCGGTAGATGCTGTGGGAGGAGAAGGAGCAGATGGGTGGTGGCGGTTTCAATCCAGCTAGCGATCATCAACCGGG] consensusID : consensus_1501#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence [CCGAAATACACAAACTGCACCGTCGTTTCATTGCTAAAAGCCCCAATCGGTTGGGTTTTGGCTGCCAATTTGTGCCACAAAACCGTTGCAAGCCACAGTGGTGCAGTACAACAATCAAACGCAGCAATCAAACAGTGTGCTTCGATCAAACCACCACATCCCGCAGCAGAGCATCACGATTACTGTGAAATGCACGACACCGTTGGTCGCCTGCCCATCTTTCTGCTGCTGCTGTTACATCCGGAAATGAAGATGCACCACTGAGAGACGTACTCGTCCAGCTAACGTGACCGTGCGCGAGATGGCGCTGAACGTGTCGAACCGGTACATCAAGACGCTGCTGTCGCTCGCGATCACCGACGGCACGATCCAGCGCATCAGCACGTCGTTCGCCCGGTTCTCGTCCCCGGTCTGCCTGAATGTGTCGAACAACAACATCAGCGAGATCGAGCCGCGCGCCTTCCGCGAGCTGCGCAACCTCACGATGCTCGACC] [+] EMBL BM628856 [CCGAAATACACAAACTGCACCGTCGTTTCATTGCTAAAAGCCCCAATCGGTTGGGTTTTGGCTGCCAATTTGTGCCACAAAACCGTTGCAAGCCACAGTGGTGCAGTACAACAATCAAACGCAGCAATCAAACAGTGTGCTTCGATCAAACCACCACATCCCGCAGCAGAGCATCACGATTACTGTGAAATGCACGACACCGTTGGTCGCCTGCCCATCTTTCTGCTGCTGCTGTTACATCCGGAAATGAAGATGCACCACTGAGAGACGTACTCGTCCAGCTAACGTGACCGTGCGCGAGATGGCGCTGAACGTGTCGAACCGGTACATCAAGACGCTGCTGTCGCTCGCGATCACCGACGGCACGATCCAGCGCATCAGCACGTCGTTCGCCCGGTTCTCGTCCCCGGTCTGCCTGAATGTGTCGAACAACAACATCAGCGAGATCGAGCCGCGCGCCTTCCGCGAGCTGCGCAACCTCACGATGCTCGACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1501#0 -------------CCGGCACCGTCGTTTAATTGCTAAAAGCCCCAATCGGTTGGGTTTTG 47 consensus_1501#1 CCGAAATACACAAACTGCACCGTCGTTTCATTGCTAAAAGCCCCAATCGGTTGGGTTTTG 60 * ************ ******************************* consensus_1501#0 GCTGCCAATTTGTGCCACAAAACCGTTGCAAGCCACAGTGGTGCAGTACAACAATCAAAC 107 consensus_1501#1 GCTGCCAATTTGTGCCACAAAACCGTTGCAAGCCACAGTGGTGCAGTACAACAATCAAAC 120 ************************************************************ consensus_1501#0 GCAGCAATCAAACAGTGTGCTTCGATCAAACCACCACATCCCGCAGCAGAGCATCACGAT 167 consensus_1501#1 GCAGCAATCAAACAGTGTGCTTCGATCAAACCACCACATCCCGCAGCAGAGCATCACGAT 180 ************************************************************ consensus_1501#0 TACTGTGAAATGCACGACACCGTTGGTCGCCTGCCCATCTTTCTGCTGCTGCTGTTACAT 227 consensus_1501#1 TACTGTGAAATGCACGACACCGTTGGTCGCCTGCCCATCTTTCTGCTGCTGCTGTTACAT 240 ************************************************************ consensus_1501#0 CCGGAAATGAAGATGCACCACTGAGAGACGTACTCGTCCAGCTAACGTACCGGCGCAAAC 287 consensus_1501#1 CCGGAAATGAAGATGCACCACTGAGAGACGTACTCGTCCAGCTAACGTGACCGTGCGCGA 300 ************************************************ * * ** consensus_1501#0 GAACGCTTTTTTTTTTTAATTCTGTTTGGTTTTGCTGTTGTCTAAATTAAGCAGCGAAAT 347 consensus_1501#1 GA------------------------TGGCGCTGAACGTGTCGAACCGGTACATCAAGAC 336 ** *** ** **** ** ** * * * consensus_1501#0 ATCGAGAGAAGAAAGCTTAATCAGCGAATCAGCATTACCCGCCGCGTTGCGATGGGATTC 407 consensus_1501#1 GCTGCTGTCGC---TCGCGATCACCGA--CGGCACGATCCAGCGCATCAGCACGTCGTTC 391 * * **** *** * *** * ** *** * * * *** consensus_1501#0 GCACGAAGGGATGCCGTCGTCGCAATGCTGCTTATAATGGGAGTAACCGTGCCGGAGCTG 467 consensus_1501#1 GCCCG----GTTCTCGTCCCCGGTCTGCC-TGAATGTGTCGAACAACAACATCAGCGAGA 446 ** ** * * **** ** *** ** ** *** * * * consensus_1501#0 CCCCTGCCGGCGGCGATGGCGCGCATCGTGGACGACACGGTGGCCGGCAGCAACGTTCTG 527 consensus_1501#1 TCGAGCCGCGCGCCTTCCGCGAGCTGCGCA-ACCTCACGATGCTCGACC----------- 494 * * *** * *** ** ** ** **** ** ** * consensus_1501#0 TTCACCGACGCACCGCAACTGCTGTCGCAGGCGCTCGATCATACTACGCCGATGCATATG 587 consensus_1501#1 ------------------------------------------------------------ consensus_1501#0 GTCGCTGTCGGAGAGCCACCGCTACCGGTAGATGCTGTGGGAGGAGAAGGAGCAGATGGG 647 consensus_1501#1 ------------------------------------------------------------ consensus_1501#0 TGGTGGCGGTTTCAATCCAGCTAGCGATCATCAACCGGG 686 consensus_1501#1 --------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||