cluster # 1503

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Anopheles gambiae
cluster # 1503 cluster # 1503 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1503#0 length = 809 sequences # 1

consensus_1503#1 length = 635 sequences # 1

consensusID : consensus_1503#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 809
fasta sequence

                              [CAGAATCCCCGCNGGTTAAATAGAACTACAAAAACAAAACGATAGCAAAACGATAAGGAAATCTCTTTGCACCTTCCCATTTTGTCTAGTCCATAGTACGTCAGCAGACTTCACAACTCACAAATTTTGCCAGAACATACCGCTCACTTAAAACACTCACCCACTTTCCCTAGCCTCACTTTGACCAGCTACTCAGCAGCTAACGTGCCGGCAGTGAGAAGGAAACGGAACAACAATCAATCGTACTCGTTCTTTCGCTTTTATAAACTAGCCTATAAGCCAACCTTACCTTACCTACCCAATTACTTGTACACTTCTGAAACGTCATGCAACACTTACCAACCTAACTCATACGTTTGCCACCAACATTACCATCACACATGATGCTGCTACTAATTATGATCGCATCACGAGTATGTCGANATGTCGCATNNGATTCTTAATCGTNCGAATCCTTTANTCGCGATGGCGCGCACTGTGTCGTACGTNAACCCTCCCCGTAGCCAGTGTNACATACCATTGGCGGCTTCACTGACCTTGTGGCTTTCAGCAATCTATGTGCAAGCTTATACGGGGAACANACAATTACCCACACACACAAATGGGCACCTAACTTACCTCCACAATTNTGNTTGCCATCCATCCGGTCNACCGTGTAGCACGCTTTCAAACACGCTCNTTGAACCGGATTTAAAGGCAAACAAACAACCACNCAGGAGACAACGTNCGTACCGCCTTATGNTTACACAAAAAAAACGACATCNTCGCTATATTAATGCTAAGGCTACANAGNGTGTACNCCTAACTGG]

[+] EMBL AL692539             [CAGAATCCCCGCNGGTTAAATAGAACTACAAAAACAAAACGATAGCAAAACGATAAGGAAATCTCTTTGCACCTTCCCATTTTGTCTAGTCCATAGTACGTCAGCAGACTTCACAACTCACAAATTTTGCCAGAACATACCGCTCACTTAAAACACTCACCCACTTTCCCTAGCCTCACTTTGACCAGCTACTCAGCAGCTAACGTGCCGGCAGTGAGAAGGAAACGGAACAACAATCAATCGTACTCGTTCTTTCGCTTTTATAAACTAGCCTATAAGCCAACCTTACCTTACCTACCCAATTACTTGTACACTTCTGAAACGTCATGCAACACTTACCAACCTAACTCATACGTTTGCCACCAACATTACCATCACACATGATGCTGCTACTAATTATGATCGCATCACGAGTATGTCGANATGTCGCATNNGATTCTTAATCGTNCGAATCCTTTANTCGCGATGGCGCGCACTGTGTCGTACGTNAACCCTCCCCGTAGCCAGTGTNACATACCATTGGCGGCTTCACTGACCTTGTGGCTTTCAGCAATCTATGTGCAAGCTTATACGGGGAACANACAATTACCCACACACACAAATGGGCACCTAACTTACCTCCACAATTNTGNTTGCCATCCATCCGGTCNACCGTGTAGCACGCTTTCAAACACGCTCNTTGAACCGGATTTAAAGGCAAACAAACAACCACNCAGGAGACAACGTNCGTACCGCCTTATGNTTACACAAAAAAAACGACATCNTCGCTATATTAATGCTAAGGCTACANAGNGTGTACNCCTAACTGG]




>consensus_1503#0
CAGAATCCCCGCNGGTTAAATAGAACTACAAAAACAAAACGATAGCAAAACGATAAGGAA
ATCTCTTTGCACCTTCCCATTTTGTCTAGTCCATAGTACGTCAGCAGACTTCACAACTCA
CAAATTTTGCCAGAACATACCGCTCACTTAAAACACTCACCCACTTTCCCTAGCCTCACT
TTGACCAGCTACTCAGCAGCTAACGTGCCGGCAGTGAGAAGGAAACGGAACAACAATCAA
TCGTACTCGTTCTTTCGCTTTTATAAACTAGCCTATAAGCCAACCTTACCTTACCTACCC
AATTACTTGTACACTTCTGAAACGTCATGCAACACTTACCAACCTAACTCATACGTTTGC
CACCAACATTACCATCACACATGATGCTGCTACTAATTATGATCGCATCACGAGTATGTC
GANATGTCGCATNNGATTCTTAATCGTNCGAATCCTTTANTCGCGATGGCGCGCACTGTG
TCGTACGTNAACCCTCCCCGTAGCCAGTGTNACATACCATTGGCGGCTTCACTGACCTTG
TGGCTTTCAGCAATCTATGTGCAAGCTTATACGGGGAACANACAATTACCCACACACACA
AATGGGCACCTAACTTACCTCCACAATTNTGNTTGCCATCCATCCGGTCNACCGTGTAGC
ACGCTTTCAAACACGCTCNTTGAACCGGATTTAAAGGCAAACAAACAACCACNCAGGAGA
CAACGTNCGTACCGCCTTATGNTTACACAAAAAAAACGACATCNTCGCTATATTAATGCT
AAGGCTACANAGNGTGTACNCCTAACTGG

consensusID : consensus_1503#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 635
fasta sequence

                              [GAATCCCCCGAGGTTTAAAAGTCGAAACACGGTCCAAAACGTGCGAGGGCNTTCATTTCGTATTGTGAAGCTTTCAATGTGTATGTCGTTGCGTTATTGTAGTTATGTCTAGTAGCAATTTTTAGCCGAGTTCACAGAATGGTTGCTTTAGGATTCAAACATTGCGTTACCATACGAATACGATTTGGTAATTTACTGTTACAATTAGTGCAAGTGATGCATCTGTTGTAGGGTTGTAACATTAACATTTGTGTGTAGTNTTATCTTATACTTACAATAGAACAATTGCTCATTCAAAGCTACTAGTCTAGTGCAAGCTGAAAACATTACATACATTAATTTCAATGTATAAAATCTAAAAATAGAACTACAAAAACCAAAACCGATAGCAAAACGAACAGGANAATCTCTTTGCACCTTCCCATTTGTCTAGGTCCATAGTACGTCAGCAGACTTCACAACTCACAAATTTTGCCAGAACATACACACACACACACACCATGCAAAACCATGCAAACCATACCGTATATGGCATTACACACTATGATAGGCAATATGCGAGCAAACNNATTTAGGCNATATGCACGCGCGCGCCCGCACAAAGCTAATAGTAAGTGGCCTGCAAAGCACGGACC]

[+] EMBL AL692482             [GAATCCCCCGAGGTTTAAAAGTCGAAACACGGTCCAAAACGTGCGAGGGCNTTCATTTCGTATTGTGAAGCTTTCAATGTGTATGTCGTTGCGTTATTGTAGTTATGTCTAGTAGCAATTTTTAGCCGAGTTCACAGAATGGTTGCTTTAGGATTCAAACATTGCGTTACCATACGAATACGATTTGGTAATTTACTGTTACAATTAGTGCAAGTGATGCATCTGTTGTAGGGTTGTAACATTAACATTTGTGTGTAGTNTTATCTTATACTTACAATAGAACAATTGCTCATTCAAAGCTACTAGTCTAGTGCAAGCTGAAAACATTACATACATTAATTTCAATGTATAAAATCTAAAAATAGAACTACAAAAACCAAAACCGATAGCAAAACGAACAGGANAATCTCTTTGCACCTTCCCATTTGTCTAGGTCCATAGTACGTCAGCAGACTTCACAACTCACAAATTTTGCCAGAACATACACACACACACACACCATGCAAAACCATGCAAACCATACCGTATATGGCATTACACACTATGATAGGCAATATGCGAGCAAACNNATTTAGGCNATATGCACGCGCGCGCCCGCACAAAGCTAATAGTAAGTGGCCTGCAAAGCACGGACC]




>consensus_1503#1
GAATCCCCCGAGGTTTAAAAGTCGAAACACGGTCCAAAACGTGCGAGGGCNTTCATTTCG
TATTGTGAAGCTTTCAATGTGTATGTCGTTGCGTTATTGTAGTTATGTCTAGTAGCAATT
TTTAGCCGAGTTCACAGAATGGTTGCTTTAGGATTCAAACATTGCGTTACCATACGAATA
CGATTTGGTAATTTACTGTTACAATTAGTGCAAGTGATGCATCTGTTGTAGGGTTGTAAC
ATTAACATTTGTGTGTAGTNTTATCTTATACTTACAATAGAACAATTGCTCATTCAAAGC
TACTAGTCTAGTGCAAGCTGAAAACATTACATACATTAATTTCAATGTATAAAATCTAAA
AATAGAACTACAAAAACCAAAACCGATAGCAAAACGAACAGGANAATCTCTTTGCACCTT
CCCATTTGTCTAGGTCCATAGTACGTCAGCAGACTTCACAACTCACAAATTTTGCCAGAA
CATACACACACACACACACCATGCAAAACCATGCAAACCATACCGTATATGGCATTACAC
ACTATGATAGGCAATATGCGAGCAAACNNATTTAGGCNATATGCACGCGCGCGCCCGCAC
AAAGCTAATAGTAAGTGGCCTGCAAAGCACGGACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1503#0      CAGAATCCCCGCNGGTTAAATAGAACTACAAAAACAAAACGATAGCAAAACGATAAGGAA 60
consensus_1503#1      ------------------------------------------------------------
                                                                                  

consensus_1503#0      ATCTCTTTGCACCTTCCCATTTTGTCTAGTCCATAGTACGTCAGCAGACTTCACAACTCA 120
consensus_1503#1      ------------------------------------------------------------
                                                                                  

consensus_1503#0      CAAATTTTGCCAGAACATACCGCTCACTTAAAACACTCACCCACTTTCCCTAGCCTCACT 180
consensus_1503#1      -----------------------------------------GAATCCCCCGAGGTTTAA- 18
                                                                * *  *** **  * *  

consensus_1503#0      TTGACCAGCTACTCAGCAGCTAACGTGCC--GGCAGTGAGAAGGAAACGGAACAACAATC 238
consensus_1503#1      --AAGTCGAAACACGGTCCAAAACGTGCGAGGGCNTTCATTTCGTATTGTGA-AGCTTTC 75
                         *   *  ** * *     *******   ***  * *    * *  *  * * *  **

consensus_1503#0      AATCGTACTCGTTCTTTCGCTTTTATAAACTAGCCTATAAGCCAACCTTACCTTACCTAC 298
consensus_1503#1      AAT-GTGTATGTCGTTGCGTTATTGTAGTTATGTCTAGTAGCAATTTTTAGCCGAGTTCA 134
                      *** **    **  ** ** * ** **     * ***  *** *   *** *  *  *  

consensus_1503#0      CCAATTACTTG-TACACTTCTGAAACGTCATGCAACACTTACCAACCTAACTCATACGTT 357
consensus_1503#1      CAGAATGGTTGCTTTAGGATTCAAACATTGCGTTAC-CATACGAATACGATTTGGTAATT 193
                      *  * *  *** *  *    * **** *   *  ** * *** **    * *      **

consensus_1503#0      TGCCACCAACATTACCATCACACATGATGCTGCTACTAATTATGATCGCATCACGAGTAT 417
consensus_1503#1      TACTGTTACAATTAGTG---CAAGTGATGCATCTGTTG--TAGGGTTGTAACATTAACAT 248
                      * *    *  ****      **  ******  **  *   ** * * * * **  *  **

consensus_1503#0      GTCGANAT-GTCGCATNNGATTCTTA-ATCGTNCGAATCCTTTANTCGCGATGGCGCGCA 475
consensus_1503#1      TTGTGTGTAGTNTTATCTTATACTTACAATAGAACAATTGCTCATTCAAAGCTACTAGTC 308
                       *     * **   **   ** **** *       ***   * * **       *  *  

consensus_1503#0      CTGTGTCGTACGTNAACCCTCCCCGTAGCCAGTGTNACATA------CCATTGGCGGCTT 529
consensus_1503#1      TAGTGCAAGCTGAAAACATTACATACATTAATTTCAATGTATAAAATCTAAAAATAGAAC 368
                        ***      *  ***  * *    *   * *   *  **      * *      *   

consensus_1503#0      CACTGACCTTGTGGCTTTCAGCAATCTATGTGCAAGCTTATACGGGGAACANACAATT-A 588
consensus_1503#1      TACAAAAACCAAAACCGATAGCAAAACGAACAGGANAATCTCTTTGCACCTTCCCATTTG 428
                       **  *        *    *****          *   * *    * * *   * ***  

consensus_1503#0      CCCACACACACAAATGGGCACCTAACTTACCTCCACAATTNTGNTTGCCATCCATCCGGT 648
consensus_1503#1      TCTAGGTCCATAGTACGTCAGCAGACTTCACAACTCACAAATTTTGCCAGAACATACACA 488
                       * *    ** *    * ** *  ****  *  * **    *  *  *    *** *   

consensus_1503#0      CNACCGTGTAGCACGCTTTCAAACACGCTCNTTGAACCGGATTTAAAGGCAAACAAACAA 708
consensus_1503#1      CACACACACACCATGCAA--AACCATGCAAACCATACCGTATATGGCATTACACAC---- 542
                      *   *    * ** **    ** ** **       **** ** *      * ***     

consensus_1503#0      CCACNCAGGAGACAACGTNCGTACCGCCTTATGNTTACACAAAAAAAACG-ACATCNTCG 767
consensus_1503#1      ---TATGATAGGCAATATGCGAGCAAACNNATTTAGGCNATATGCACGCGCGCGCCCGCA 599
                               ** ***  * **  *   *  **     *   *   *  **  *  *  * 

consensus_1503#0      CTATATTAATGCTAAGG---CTACANAGNGTGTACNCCTAACTGG 809
consensus_1503#1      CAAAGCTAATAGTAAGTGGCCTGCAAAGCACGGACC--------- 635
                      * *   ****  ****    ** ** **   * **