These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1513#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 790 fasta sequence [CCCGAGGTTATAACTACTTTATACAAACACATGACAATCGGCCATAGCGGTTCTCCCCACTATCGTTGTTCCCACTTATCTCTCCACGAATTGTTCGATTGAAATAGCGGTACTAATGAACTATTTACCTTACTTTTTTTGTGTTTAGCACCACCAGTGTTAAGAAACATTCCTTGTGATAGGGGTTCGAAAAAAAACTATATTCACGAACGCGTTACCAAAATTACCTTTACAAGCGTGTGCGGTGATTCTTTTGTTTAAGGTACTATTACTTCGAAAACGAAACCCGACCCAAAAGAGGAGGGTTAAAATATTATTTAAACATTGTNTTTGGCAACAGTAACGAATCGCGTCGAAGAATAGAACTTNGAACTTCCTGGCATAGAAAGTTTGCTGAACTNGATTACTCTGTACTAACTTTTCAAAGCGAACATGTCCGCCGTACTCTACATTTNTAGCTGTTAAATTTCGATACTTTACATGTTCATTTGANCTTTCCGCTNCTCGGCAACACGAACCAAGCTTTTAAGTATACGTTCGTTTTCGTTTCAGTTGTGCTAGGGACGTAGCAACTACGAGGAAAATTACCTTCTCACAGGATGATATTTAGCTGCTTATGAGTGATAGCTTGTCTTTTGAGCCTCGTGCTTGCAAGATGCTGCAGAACCTTCTACTGGAATAGATATTCATCTCATGCATCCTCATNTAACTAGTTCTCGGTCGTNGTNCTTGCNCAGAGAGAGAGACNCCTATCATGNNTTAACCATGTGTTTACCGAGCCACACACACA] [+] EMBL AL692547 [CCCGAGGTTATAACTACTTTATACAAACACATGACAATCGGCCATAGCGGTTCTCCCCACTATCGTTGTTCCCACTTATCTCTCCACGAATTGTTCGATTGAAATAGCGGTACTAATGAACTATTTACCTTACTTTTTTTGTGTTTAGCACCACCAGTGTTAAGAAACATTCCTTGTGATAGGGGTTCGAAAAAAAACTATATTCACGAACGCGTTACCAAAATTACCTTTACAAGCGTGTGCGGTGATTCTTTTGTTTAAGGTACTATTACTTCGAAAACGAAACCCGACCCAAAAGAGGAGGGTTAAAATATTATTTAAACATTGTNTTTGGCAACAGTAACGAATCGCGTCGAAGAATAGAACTTNGAACTTCCTGGCATAGAAAGTTTGCTGAACTNGATTACTCTGTACTAACTTTTCAAAGCGAACATGTCCGCCGTACTCTACATTTNTAGCTGTTAAATTTCGATACTTTACATGTTCATTTGANCTTTCCGCTNCTCGGCAACACGAACCAAGCTTTTAAGTATACGTTCGTTTTCGTTTCAGTTGTGCTAGGGACGTAGCAACTACGAGGAAAATTACCTTCTCACAGGATGATATTTAGCTGCTTATGAGTGATAGCTTGTCTTTTGAGCCTCGTGCTTGCAAGATGCTGCAGAACCTTCTACTGGAATAGATATTCATCTCATGCATCCTCATNTAACTAGTTCTCGGTCGTNGTNCTTGCNCAGAGAGAGAGACNCCTATCATGNNTTAACCATGTGTTTACCGAGCCACACACACA] consensusID : consensus_1513#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence [GCAGAAAAGCCCCTTACATACTCCGGCTCGATATTACTGATTCAGTTTCACAGTCAAACTACTTTATACAAAACACATGACAAACCGGCCATAGCGGTTCTCCCCACTATCGTTGTTCCCACTTATCTCTCCACGAATTGTTCGATTGAAATAGCGGTACTAATGAACTATTTACCTTACTTTTTTTGTGTTTAGCACCACCAGTGTTAAGAAACATTCCTTGTGATAGGGGTTCGAAAAAAAACTATATTCACGAACGCGTTACCAAAATTACCTTTACAAGCGTGTGCGGTGATTCTTTTTGTTTAAGGTACTATTACTTCGAAAACGAAACCCGACCCAAAAGAGGAGGGTTAAAATATTATTTAAAATTGTTTTGGCAACAGTAACGAATCGCGTCGAAGAATAGAATTTGAATTAATGGATAGAAAGTTTGCTGAATTGATTACTCTGTACTAACTTTTCAAAGCGAAATGTTGCCGTACTCTACATTTTTAGTGTTAAATTTCGATACTTTACATGTTCATTTGAATTTCCGTTTTGGAAAACGAACCAAGCTTTTAAGTATACGTTGTTTTCGTTTTAGTTGTGCTAGGGACGTAGCAACTACGAGGAAAATTACCTTCTCACAGGATGATATTTAGTGCTTATCGG] [-] EMBL BM592193 [GCAGAAAAGCCCCTTACATACTCCGGCTCGATATTACTGATTCAGTTTCACAGTCAAACTACTTTATACAAAACACATGACAAACCGGCCATAGCGGTTCTCCCCACTATCGTTGTTCCCACTTATCTCTCCACGAATTGTTCGATTGAAATAGCGGTACTAATGAACTATTTACCTTACTTTTTTTGTGTTTAGCACCACCAGTGTTAAGAAACATTCCTTGTGATAGGGGTTCGAAAAAAAACTATATTCACGAACGCGTTACCAAAATTACCTTTACAAGCGTGTGCGGTGATTCTTTTTGTTTAAGGTACTATTACTTCGAAAACGAAACCCGACCCAAAAGAGGAGGGTTAAAATATTATTTAAAATTGTTTTGGCAACAGTAACGAATCGCGTCGAAGAATAGAATTTGAATTAATGGATAGAAAGTTTGCTGAATTGATTACTCTGTACTAACTTTTCAAAGCGAAATGTTGCCGTACTCTACATTTTTAGTGTTAAATTTCGATACTTTACATGTTCATTTGAATTTCCGTTTTGGAAAACGAACCAAGCTTTTAAGTATACGTTGTTTTCGTTTTAGTTGTGCTAGGGACGTAGCAACTACGAGGAAAATTACCTTCTCACAGGATGATATTTAGTGCTTATCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1513#0 ----------------------------------------------CCCGAGGTTATAAC 14 consensus_1513#1 GCAGAAAAGCCCCTTACATACTCCGGCTCGATATTACTGATTCAGTTTCACAGTCA-AAC 59 * ** * *** consensus_1513#0 TACTTTATACAAA-CACATGACAA-TCGGCCATAGCGGTTCTCCCCACTATCGTTGTTCC 72 consensus_1513#1 TACTTTATACAAAACACATGACAAACCGGCCATAGCGGTTCTCCCCACTATCGTTGTTCC 119 ************* ********** ********************************** consensus_1513#0 CACTTATCTCTCCACGAATTGTTCGATTGAAATAGCGGTACTAATGAACTATTTACCTTA 132 consensus_1513#1 CACTTATCTCTCCACGAATTGTTCGATTGAAATAGCGGTACTAATGAACTATTTACCTTA 179 ************************************************************ consensus_1513#0 CTTTTTTTGTGTTTAGCACCACCAGTGTTAAGAAACATTCCTTGTGATAGGGGTTCGAAA 192 consensus_1513#1 CTTTTTTTGTGTTTAGCACCACCAGTGTTAAGAAACATTCCTTGTGATAGGGGTTCGAAA 239 ************************************************************ consensus_1513#0 AAAAACTATATTCACGAACGCGTTACCAAAATTACCTTTACAAGCGTGTGCGGTGATTCT 252 consensus_1513#1 AAAAACTATATTCACGAACGCGTTACCAAAATTACCTTTACAAGCGTGTGCGGTGATTCT 299 ************************************************************ consensus_1513#0 TTT-GTTTAAGGTACTATTACTTCGAAAACGAAACCCGACCCAAAAGAGGAGGGTTAAAA 311 consensus_1513#1 TTTTGTTTAAGGTACTATTACTTCGAAAACGAAACCCGACCCAAAAGAGGAGGGTTAAAA 359 *** ******************************************************** consensus_1513#0 TATTATTTAAACATTGTNTTTGGCAACAGTAACGAATCGCGTCGAAGAATAGAACTTNGA 371 consensus_1513#1 TATTATTTAAA-ATTGTTTT-GGCAACAGTAACGAATCGCGTCGAAGAATAGAATTTGAA 417 *********** ***** ** ********************************* ** * consensus_1513#0 ACTTCCTGGCATAGAAAGTTTGCTGAACTNGATTACTCTGTACTAACTTTTCAAAGCGAA 431 consensus_1513#1 --TTAATGG-ATAGAAAGTTTGCTGAA-TTGATTACTCTGTACTAACTTTTCAAAGCGAA 473 ** *** ***************** * ****************************** consensus_1513#0 CATGTCCGCCGTACTCTACATTTNTAGCTGTTAAATTTCGATACTTTACATGTTCATTTG 491 consensus_1513#1 -ATGTT-GCCGTACTCTACATTTTTAG-TGTTAAATTTCGATACTTTACATGTTCATTTG 530 **** **************** *** ******************************** consensus_1513#0 ANCTTTCCGCTNCTCGGCAACACGAACCAAGCTTTTAAGTATACGTTCGTTTTCGTTTCA 551 consensus_1513#1 AA-TTTCCGTTTT---GGAAAACGAACCAAGCTTTTAAGTATACGTT-GTTTTCGTTTTA 585 * ****** * * ** ************************** ********** * consensus_1513#0 GTTGTGCTAGGGACGTAGCAACTACGAGGAAAATTACCTTCTCACAGGATGATATTTAGC 611 consensus_1513#1 GTTGTGCTAGGGACGTAGCAACTACGAGGAAAATTACCTTCTCACAGGATGATATTTAG- 644 *********************************************************** consensus_1513#0 TGCTTATGAGTGATAGCTTGTCTTTTGAGCCTCGTGCTTGCAAGATGCTGCAGAACCTTC 671 consensus_1513#1 TGCTTATCGG-------------------------------------------------- 654 ******* * consensus_1513#0 TACTGGAATAGATATTCATCTCATGCATCCTCATNTAACTAGTTCTCGGTCGTNGTNCTT 731 consensus_1513#1 ------------------------------------------------------------ consensus_1513#0 GCNCAGAGAGAGAGACNCCTATCATGNNTTAACCATGTGTTTACCGAGCCACACACACA 790 consensus_1513#1 ----------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||