cluster # 1516

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Anopheles gambiae
cluster # 1516 cluster # 1516 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1516#0 length = 458 sequences # 1

consensus_1516#1 length = 150 sequences # 1

consensusID : consensus_1516#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 458
fasta sequence

                              [CCGGCTTGGGGGAAAACTACACCGCGCGCTAAAAAAAAAAAACAAATTTCCATACTAACATACACACACCCTCTCACACGCCAAAAACCCAACGTCCGCTTCCGTGTTCTTGTTTTTTTTTGTGTTCCGTTCTAGTTGGATGGCGAATTTGGAAGCTTGCTGACGAAATTTTCCGCCCAACTGAAGGACAACTGGGTCAAGATTTACATAACCTCCTCCTCTTCTTCTTCTTCTTCCAACTCCTCCTCCTCCTCCTCCTCCACCAACAGCACCGTTTCCAAGGCAGCAGCCACCAATGCTAAGCGGGCCGAACCGATCGTTCAAGTAAATAACCAAATTGGCCAAAATGTGCACCGCTTTTGTAAATGCTAAATGCTAAAATGTCACACGTAGTCACACACACACAGCCTCATTTTCCACAACCCCTTCGTAAGATGGCTTTGATGGTGCTGTTAGTA]

[+] EMBL BM609195             [CCGGCTTGGGGGAAAACTACACCGCGCGCTAAAAAAAAAAAACAAATTTCCATACTAACATACACACACCCTCTCACACGCCAAAAACCCAACGTCCGCTTCCGTGTTCTTGTTTTTTTTTGTGTTCCGTTCTAGTTGGATGGCGAATTTGGAAGCTTGCTGACGAAATTTTCCGCCCAACTGAAGGACAACTGGGTCAAGATTTACATAACCTCCTCCTCTTCTTCTTCTTCTTCCAACTCCTCCTCCTCCTCCTCCTCCACCAACAGCACCGTTTCCAAGGCAGCAGCCACCAATGCTAAGCGGGCCGAACCGATCGTTCAAGTAAATAACCAAATTGGCCAAAATGTGCACCGCTTTTGTAAATGCTAAATGCTAAAATGTCACACGTAGTCACACACACACAGCCTCATTTTCCACAACCCCTTCGTAAGATGGCTTTGATGGTGCTGTTAGTA]




>consensus_1516#0
CCGGCTTGGGGGAAAACTACACCGCGCGCTAAAAAAAAAAAACAAATTTCCATACTAACA
TACACACACCCTCTCACACGCCAAAAACCCAACGTCCGCTTCCGTGTTCTTGTTTTTTTT
TGTGTTCCGTTCTAGTTGGATGGCGAATTTGGAAGCTTGCTGACGAAATTTTCCGCCCAA
CTGAAGGACAACTGGGTCAAGATTTACATAACCTCCTCCTCTTCTTCTTCTTCTTCCAAC
TCCTCCTCCTCCTCCTCCTCCACCAACAGCACCGTTTCCAAGGCAGCAGCCACCAATGCT
AAGCGGGCCGAACCGATCGTTCAAGTAAATAACCAAATTGGCCAAAATGTGCACCGCTTT
TGTAAATGCTAAATGCTAAAATGTCACACGTAGTCACACACACACAGCCTCATTTTCCAC
AACCCCTTCGTAAGATGGCTTTGATGGTGCTGTTAGTA

consensusID : consensus_1516#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 150
fasta sequence

                              [ACTGGGTCAAGATTTACATAACCTCCTCCTCTTCTTCTTCTTCTTCCAACTCCTCCTCCTCCTCCTCCTCCAACAGCGCCGTTTCCAAGGCAGCAACCACCAATGCTAAGAGGGCCGAACCGATCGTTCAAACGGTTGCACCGTTCGGTG]

[+] EMBL BM640938             [ACTGGGTCAAGATTTACATAACCTCCTCCTCTTCTTCTTCTTCTTCCAACTCCTCCTCCTCCTCCTCCTCCAACAGCGCCGTTTCCAAGGCAGCAACCACCAATGCTAAGAGGGCCGAACCGATCGTTCAAACGGTTGCACCGTTCGGTG]




>consensus_1516#1
ACTGGGTCAAGATTTACATAACCTCCTCCTCTTCTTCTTCTTCTTCCAACTCCTCCTCCT
CCTCCTCCTCCAACAGCGCCGTTTCCAAGGCAGCAACCACCAATGCTAAGAGGGCCGAAC
CGATCGTTCAAACGGTTGCACCGTTCGGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1516#0      CCGGCTTGGGGGAAAACTACACCGCGCGCTAAAAAAAAAAAACAAATTTCCATACTAACA 60
consensus_1516#1      ------------------------------------------------------------
                                                                                  

consensus_1516#0      TACACACACCCTCTCACACGCCAAAAACCCAACGTCCGCTTCCGTGTTCTTGTTTTTTTT 120
consensus_1516#1      ------------------------------------------------------------
                                                                                  

consensus_1516#0      TGTGTTCCGTTCTAGTTGGATGGCGAATTTGGAAGCTTGCTGACGAAATTTTCCGCCCAA 180
consensus_1516#1      ------------------------------------------------------------
                                                                                  

consensus_1516#0      CTGAAGGACAACTGGGTCAAGATTTACATAACCTCCTCCTCTTCTTCTTCTTCTTCCAAC 240
consensus_1516#1      ----------ACTGGGTCAAGATTTACATAACCTCCTCCTCTTCTTCTTCTTCTTCCAAC 50
                                **************************************************

consensus_1516#0      TCCTCCTCCTCCTCCTCCTCCACCAACAGCACCGTTTCCAAGGCAGCAGCCACCAATGCT 300
consensus_1516#1      TCCTCCTCCTCCTCCTCCTCC---AACAGCGCCGTTTCCAAGGCAGCAACCACCAATGCT 107
                      *********************   ****** ***************** ***********

consensus_1516#0      AAGCGGGCCGAACCGATCGTTCAAGTAAATAACCAAATTGGCCAAAATGTGCACCGCTTT 360
consensus_1516#1      AAGAGGGCCGAACCGATCGTTCAAACGGTTGCACCGTTCGGTG----------------- 150
                      *** ********************     *   *   * **                   

consensus_1516#0      TGTAAATGCTAAATGCTAAAATGTCACACGTAGTCACACACACACAGCCTCATTTTCCAC 420
consensus_1516#1      ------------------------------------------------------------
                                                                                  

consensus_1516#0      AACCCCTTCGTAAGATGGCTTTGATGGTGCTGTTAGTA 458
consensus_1516#1      --------------------------------------