These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_153#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence [CAGATCGGCCCAGGATTTAACTCGTTCAAGCGAGAAGTTGTGCCCGCATCGTCTGAAGCGAAAGAAAAGCGCCCGGTGGTTGTTCCCCACTATTTTGCCTCAGTGCTTTTTCGCGTGTGTCCTACCGACCGAGACCTACCCCTGTACCAGCGCAGACAGATGGCGTACTGAACCGAAGAACGGGCCCATTCGATCCCCGCTAACCCCAACCAGAACCAGACAAGCACTGCTAACCAGAGCTATCTGGCACTTTCCACCGCTGCGAGAAGGTCAAGGGCGAGGGCGACCAGGTATGCNCCGCTACTTCAAGAACGTACTTNCTCGTCGATGTGCCCCAACTCGTGGGTTGAGAAGTGGGACAGCCAGCTGCGGAGGAGGGCACCTTTGCCGNGCACATTCTACGGGCATTCCAAGTCGGAACCGTGTNCAGAGGGGATGAGAGAGGAGTGGCCGCGCTAGATNGTANACGGAGTGCAACCGGATAGTCGCTACTGCTCTCCCGTGGATCCCTATATATAT] [+] EMBL AL694523 [CAGATCGGCCCAGGATTTAACTCGTTCAAGCGAGAAGTTGTGCCCGCATCGTCTGAAGCGAAAGAAAAGCGCCCGGTGGTTGTTCCCCACTATTTTGCCTCAGTGCTTTTTCGCGTGTGTCCTACCGACCGAGACCTACCCCTGTACCAGCGCAGACAGATGGCGTACTGAACCGAAGAACGGGCCCATTCGATCCCCGCTAACCCCAACCAGAACCAGACAAGCACTGCTAACCAGAGCTATCTGGCACTTTCCACCGCTGCGAGAAGGTCAAGGGCGAGGGCGACCAGGTATGCNCCGCTACTTCAAGAACGTACTTNCTCGTCGATGTGCCCCAACTCGTGGGTTGAGAAGTGGGACAGCCAGCTGCGGAGGAGGGCACCTTTGCCGNGCACATTCTACGGGCATTCCAAGTCGGAACCGTGTNCAGAGGGGATGAGAGAGGAGTGGCCGCGCTAGATNGTANACGGAGTGCAACCGGATAGTCGCTACTGCTCTCCCGTGGATCCCTATATATAT] consensusID : consensus_153#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence [TTTGTTTTACATTATTCATTAATTAGACGTGTTTACTGCAGCATTTGGGATTTTGCTTGTTTAGTTTTTTTTCTACTATGTTGCACGTGTTGCCCTTCGCGCTTTTCACCCTATTAGTGTATATATGCATGTGTGTGAATGTTTTGCTTTGCACGCTCTTAACACATTCTTTGTTTTATAAAAATAAGTTGGAAAAATTACTCAAAAAACAAACTATCCACACCGTACTCGAGAAAAAAGAAGCCTATACACACCACTTACAACCACCCGCAAGATTAGGCCTTTCTATGCACAGAGCTGGCTCTTACAGTGTGTTGCAACACACCTGTCTGTGTGTGTGTTCTATCTCGGCTGGAGGGATTCAATGTTGGCCTATGATAAATAAAAAAGCGCCTGCAT] [+] EMBL AGA284176 [TTTGTTTTACATTATTCATTAATTAGACGTGTTTACTGCAGCATTTGGGATTTTGCTTGTTTAGTTTTTTTTCTACTATGTTGCACGTGTTGCCCTTCGCGCTTTTCACCCTATTAGTGTATATATGCATGTGTGTGAATGTTTTGCTTTGCACGCTCTTAACACATTCTTTGTTTTATAAAAATAAGTTGGAAAAATTACTCAAAAAACAAACTATCCACACCGTACTCGAGAAAAAAGAAGCCTATACACACCACTTACAACCACCCGCAAGATTAGGCCTTTCTATGCACAGAGCTGGCTCTTACAGTGTGTTGCAACACACCTGTCTGTGTGTGTGTTCTATCTCGGCTGGAGGGATTCAATGTTGGCCTATGATAAATAAAAAAGCGCCTGCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_153#0 CAGATCGGCCCAGGATTTAACTCGTTCA--AGCGAGAAGTTGTGCCCGCATCGTCTGAAG 58 consensus_153#1 ----------TTTGTTTTACATTATTCATTAATTAGACGTGTTTACTGCAGCATTTG--- 47 * **** * **** * *** ** * * *** * * ** consensus_153#0 CGAAAGAAAAGCGCCCGGTGGTTGTTCCCCACTATTTTGCCTCAGTGCTTTTTCGCGTGT 118 consensus_153#1 -GGATTTTGCTTGTTTAGT--TTTTTTTCTACTATGTTGCACGTGTTGCCCTTCGCGCTT 104 * * * ** ** ** * ***** **** ** ****** * consensus_153#0 GTCCTACCGACCGAGACCTACCCCTGTACCAGCGCAGACAGATGGCGTACTGAACCGAAG 178 consensus_153#1 TTCACCCTATTAGTG---TATATATGCATGTGTGTGAATGTTTTGCTTTGCACGCTCTTA 161 ** * * * ** ** * * * * * ** * * consensus_153#0 AACGGGCCCATTCGATCCCCGCTAACCCCAACCAGAACCAGACAAGCACTGCTAACCAGA 238 consensus_153#1 A-----CACATTCTTTGTTTTATAA----AAATAAGTTGGAAAAATTACTCAAAAAACAA 212 * * ***** * *** ** * * ** *** ** * consensus_153#0 GCTATCTGGCACTTTCCACCGCTGCGAGAAGGTCAAGGGCGAGGGCGACCAGGTATGCNC 298 consensus_153#1 ACTATC---CACACCGTACT----CGAGAAAAAAGAAGCCTATACACACCACTTACA-AC 264 ***** *** ** ****** * * * * **** ** * consensus_153#0 CGCTACTTCAAGAACGTACTTNCTCGTCGATGTGCCCCAACTCGTGGGTTGAGAAGTGGG 358 consensus_153#1 CAC--CCGCAAGATTAGGCCTTTCTATGCACA-GAGCTGGCTCTTACAGTGTGTTGCAAC 321 * * * ***** * * * * * * *** * ** * * consensus_153#0 ACAGCCAGCTGCGGAGGAGGGC-ACCTTTGCCGNGCACATTCTACG--GGCATTCCA-AG 414 consensus_153#1 ACACCTGTCTGTGTGTGTGTTCTATCTCGGCTGGAGGGATTCAATGTTGGCCTATGATAA 381 *** * *** * * * * * ** ** * **** * * *** * * * consensus_153#0 TCGGAACCGTGTNCAGAGGGGATGAGAGAGGAGTGGCCGCGCTAGATNGTANACGGAGTG 474 consensus_153#1 ATAAAAAAGCGCCTGCAT------------------------------------------ 399 ** * * * consensus_153#0 CAACCGGATAGTCGCTACTGCTCTCCCGTGGATCCCTATATATAT 519 consensus_153#1 --------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||