These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1531#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 455 fasta sequence [TGGGTAATTTTTTTTTACATTGACCCGGATCGTCACAGATCGGTGCCGCATCCTTGCCGTACGAAGAGAGCCGGCAGAATTATCCTTTTTTCCGCCCTAAAGTGATCACTAAAAGAAGTGCTCATCATGTTCATTACCAACATACTGCTGAAGAAAGCGAAAAGCAAGAATATCCTCGTGCTGATGGAAAGTGCCGTCAGTGGGCATCAGTTTACCATGATCCGTGAGCGGTTGGCCGACAAGCTGGAACTGCAGCGCTTTGACCCATACATTCAAAAGATGTGCCTGTACCGGGAGCGCAAACGGCTACGAAGTCTCAACTAAACGGGGTCCATGTATTTTTTTCCCCGGCATTATTCGGCCACAGTCGTAGTTTGTGTATATAAATAAACCAATAAACCGTGCGTGTGTTTTTGTGCGAAGTTACCAAAAAAAAAAAAAAAAAGCACAGTCCG] [+] EMBL CNS08ODC [TGGGTAATTTTTTTTTACATTGACCCGGATCGTCACAGATCGGTGCCGCATCCTTGCCGTACGAAGAGAGCCGGCAGAATTATCCTTTTTTCCGCCCTAAAGTGATCACTAAAAGAAGTGCTCATCATGTTCATTACCAACATACTGCTGAAGAAAGCGAAAAGCAAGAATATCCTCGTGCTGATGGAAAGTGCCGTCAGTGGGCATCAGTTTACCATGATCCGTGAGCGGTTGGCCGACAAGCTGGAACTGCAGCGCTTTGACCCATACATTCAAAAGATGTGCCTGTACCGGGAGCGCAAACGGCTACGAAGTCTCAACTAAACGGGGTCCATGTATTTTTTTCCCCGGCATTATTCGGCCACAGTCGTAGTTTGTGTATATAAATAAACCAATAAACCGTGCGTGTGTTTTTGTGCGAAGTTACCAAAAAAAAAAAAAAAAAGCACAGTCCG] consensusID : consensus_1531#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 389 fasta sequence [CCGCGGACGCGTGGGGGATCGTCACAGATCGGTGCCGCATCCTTGCCGTACGAAGAGAGCCGGCAGAATTATCCTTTTTTCCGCCCTAAAGTGATCACTAAAAGAAGTGCTCATCATGTTCATTACCAACATACTGCTGAAGAAAGCGAAAAGCAAGAATATCCTCGTGCTGATGGAAAGTGCCGTCAGTGGGCATCAGTTTACCATGATCCGTGAGCGGTTGGCCGACAAGCTGGAACTGCAGCGCTTTGACCCATACATTCAAAAGATGTGCCTGTACCGGGAGCGCAAACGGCTACGAAGTCTCAACTAAACGGGGTCCCATGTATTTTTTTCCCCGGCATTATTCGGCCACAGTCGTAGTTTGTGTATATAAATAAACCAATAAA] [+] EMBL BM608981 [CCGCGGACGCGTGGGGGATCGTCACAGATCGGTGCCGCATCCTTGCCGTACGAAGAGAGCCGGCAGAATTATCCTTTTTTCCGCCCTAAAGTGATCACTAAAAGAAGTGCTCATCATGTTCATTACCAACATACTGCTGAAGAAAGCGAAAAGCAAGAATATCCTCGTGCTGATGGAAAGTGCCGTCAGTGGGCATCAGTTTACCATGATCCGTGAGCGGTTGGCCGACAAGCTGGAACTGCAGCGCTTTGACCCATACATTCAAAAGATGTGCCTGTACCGGGAGCGCAAACGGCTACGAAGTCTCAACTAAACGGGGTCCCATGTATTTTTTTCCCCGGCATTATTCGGCCACAGTCGTAGTTTGTGTATATAAATAAACCAATAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1531#0 TGGGTAATTTTTTTTTACATTGACCCGGATCGTCACAGATCGGTGCCGCATCCTTGCCGT 60 consensus_1531#1 --------CCGCGGACGCGTGGG---GGATCGTCACAGATCGGTGCCGCATCCTTGCCGT 49 * * * ********************************** consensus_1531#0 ACGAAGAGAGCCGGCAGAATTATCCTTTTTTCCGCCCTAAAGTGATCACTAAAAGAAGTG 120 consensus_1531#1 ACGAAGAGAGCCGGCAGAATTATCCTTTTTTCCGCCCTAAAGTGATCACTAAAAGAAGTG 109 ************************************************************ consensus_1531#0 CTCATCATGTTCATTACCAACATACTGCTGAAGAAAGCGAAAAGCAAGAATATCCTCGTG 180 consensus_1531#1 CTCATCATGTTCATTACCAACATACTGCTGAAGAAAGCGAAAAGCAAGAATATCCTCGTG 169 ************************************************************ consensus_1531#0 CTGATGGAAAGTGCCGTCAGTGGGCATCAGTTTACCATGATCCGTGAGCGGTTGGCCGAC 240 consensus_1531#1 CTGATGGAAAGTGCCGTCAGTGGGCATCAGTTTACCATGATCCGTGAGCGGTTGGCCGAC 229 ************************************************************ consensus_1531#0 AAGCTGGAACTGCAGCGCTTTGACCCATACATTCAAAAGATGTGCCTGTACCGGGAGCGC 300 consensus_1531#1 AAGCTGGAACTGCAGCGCTTTGACCCATACATTCAAAAGATGTGCCTGTACCGGGAGCGC 289 ************************************************************ consensus_1531#0 AAACGGCTACGAAGTCTCAACTAAACGGGGTCC-ATGTATTTTTTTCCCCGGCATTATTC 359 consensus_1531#1 AAACGGCTACGAAGTCTCAACTAAACGGGGTCCCATGTATTTTTTTCCCCGGCATTATTC 349 ********************************* ************************** consensus_1531#0 GGCCACAGTCGTAGTTTGTGTATATAAATAAACCAATAAACCGTGCGTGTGTTTTTGTGC 419 consensus_1531#1 GGCCACAGTCGTAGTTTGTGTATATAAATAAACCAATAAA-------------------- 389 **************************************** consensus_1531#0 GAAGTTACCAAAAAAAAAAAAAAAAAGCACAGTCCG 455 consensus_1531#1 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||