cluster # 1557

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Anopheles gambiae
cluster # 1557 cluster # 1557 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1557#0 length = 674 sequences # 1

consensus_1557#1 length = 514 sequences # 1

consensusID : consensus_1557#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 674
fasta sequence

                              [GACCCACGCGTCCGGGGACAGCAACAGCCCCACAAACCGATCAACATTGGCAAGATGAACGATGTCAATCTGGATGGGTTAAAGGTATCGGAAGACGATGAAACTCCGTAGCTCGCACGGCTCGACCAGTCTCCTTTCGGCCAACGAAGATAATAGCGATAATGAATGATTTGTTAAGCGACTTGACTGGACGACTGGAGGACCGGTGGGAATACAACGACACACATACTCTCAGGCAAGAACGACACAATGGAACAGGATATAATCGTCCCAACATTATTGCCACTTGGGCCATTGTATTACCCAAGAAGTCTTACATACATCAACCACTACTGGTATGCTCTCTAAATGAAAACCCAATTAAGCAGATGCGAACGACACTTAGGTTCAGTCGTAAACTCGTAATACTCTCAGATACTGTAGCAGAGACCTCAGTACTTATGCGGTAGCGATAACGAAACAAGTATTAACCACGCAAACGATGATTCCTCATCAAAATTTACTTCGATTTTCTATTTCCTTACTACCCAGCAATATGGTGTAAACTCTCCAACAAAACATATAGTACAACAGCTCGTCCCCAGTTTTAGCGAGCTACAGATCATAGCTTATTTATATCCCTTGGAACAGAAAAGTATTGCCAATACGCAGTTAGCTCACAGATCATTCTCGTT]

[+] EMBL BM649061             [GACCCACGCGTCCGGGGACAGCAACAGCCCCACAAACCGATCAACATTGGCAAGATGAACGATGTCAATCTGGATGGGTTAAAGGTATCGGAAGACGATGAAACTCCGTAGCTCGCACGGCTCGACCAGTCTCCTTTCGGCCAACGAAGATAATAGCGATAATGAATGATTTGTTAAGCGACTTGACTGGACGACTGGAGGACCGGTGGGAATACAACGACACACATACTCTCAGGCAAGAACGACACAATGGAACAGGATATAATCGTCCCAACATTATTGCCACTTGGGCCATTGTATTACCCAAGAAGTCTTACATACATCAACCACTACTGGTATGCTCTCTAAATGAAAACCCAATTAAGCAGATGCGAACGACACTTAGGTTCAGTCGTAAACTCGTAATACTCTCAGATACTGTAGCAGAGACCTCAGTACTTATGCGGTAGCGATAACGAAACAAGTATTAACCACGCAAACGATGATTCCTCATCAAAATTTACTTCGATTTTCTATTTCCTTACTACCCAGCAATATGGTGTAAACTCTCCAACAAAACATATAGTACAACAGCTCGTCCCCAGTTTTAGCGAGCTACAGATCATAGCTTATTTATATCCCTTGGAACAGAAAAGTATTGCCAATACGCAGTTAGCTCACAGATCATTCTCGTT]




>consensus_1557#0
GACCCACGCGTCCGGGGACAGCAACAGCCCCACAAACCGATCAACATTGGCAAGATGAAC
GATGTCAATCTGGATGGGTTAAAGGTATCGGAAGACGATGAAACTCCGTAGCTCGCACGG
CTCGACCAGTCTCCTTTCGGCCAACGAAGATAATAGCGATAATGAATGATTTGTTAAGCG
ACTTGACTGGACGACTGGAGGACCGGTGGGAATACAACGACACACATACTCTCAGGCAAG
AACGACACAATGGAACAGGATATAATCGTCCCAACATTATTGCCACTTGGGCCATTGTAT
TACCCAAGAAGTCTTACATACATCAACCACTACTGGTATGCTCTCTAAATGAAAACCCAA
TTAAGCAGATGCGAACGACACTTAGGTTCAGTCGTAAACTCGTAATACTCTCAGATACTG
TAGCAGAGACCTCAGTACTTATGCGGTAGCGATAACGAAACAAGTATTAACCACGCAAAC
GATGATTCCTCATCAAAATTTACTTCGATTTTCTATTTCCTTACTACCCAGCAATATGGT
GTAAACTCTCCAACAAAACATATAGTACAACAGCTCGTCCCCAGTTTTAGCGAGCTACAG
ATCATAGCTTATTTATATCCCTTGGAACAGAAAAGTATTGCCAATACGCAGTTAGCTCAC
AGATCATTCTCGTT

consensusID : consensus_1557#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 514
fasta sequence

                              [GCGTGTGGAAGAGCTAAAGCACGAGCTGGCCTCCGCGGAGGATGAGCTCGATGCCGCCTGCAATCACGTGCGTCGGCTGCAGCGCACCAACGAGGAACTGAGCGGACAGACTGAAGGCTTGCAGGTGCAGATACAGCATCTTCAGACGAGACTCCGTAGCTCGCACGGCTCGACCAGTCTCCTTTCGGCCAACGAAGATAATAGCGATAATGAATGATTTGTTAAGCAACTTGACTGGACTGGAGGACCGGTGGGAATACAACGACACACATACTCTCAGGCAAGAACGACACAATGGTACAGGATGGGCCATTGTATTACCCAAGAAGTCTTACATACATCAACCACTACTGGTATGCTCTCTAAATGAAAACCCAATTAAGCAGATGCGAACGACACTTAGGTTTAGTCGTAAACTGGTAATACTCTCAGATACTGTAGCAGAGACCTCAGTACTTATGCGGTAGCGATAACGAAACAAGTATTAATCACGCAAACGATGATTCCTCATCAA]

[+] EMBL BX602357             [GCGTGTGGAAGAGCTAAAGCACGAGCTGGCCTCCGCGGAGGATGAGCTCGATGCCGCCTGCAATCACGTGCGTCGGCTGCAGCGCACCAACGAGGAACTGAGCGGACAGACTGAAGGCTTGCAGGTGCAGATACAGCATCTTCAGACGAGACTCCGTAGCTCGCACGGCTCGACCAGTCTCCTTTCGGCCAACGAAGATAATAGCGATAATGAATGATTTGTTAAGCAACTTGACTGGACTGGAGGACCGGTGGGAATACAACGACACACATACTCTCAGGCAAGAACGACACAATGGTACAGGATGGGCCATTGTATTACCCAAGAAGTCTTACATACATCAACCACTACTGGTATGCTCTCTAAATGAAAACCCAATTAAGCAGATGCGAACGACACTTAGGTTTAGTCGTAAACTGGTAATACTCTCAGATACTGTAGCAGAGACCTCAGTACTTATGCGGTAGCGATAACGAAACAAGTATTAATCACGCAAACGATGATTCCTCATCAA]




>consensus_1557#1
GCGTGTGGAAGAGCTAAAGCACGAGCTGGCCTCCGCGGAGGATGAGCTCGATGCCGCCTG
CAATCACGTGCGTCGGCTGCAGCGCACCAACGAGGAACTGAGCGGACAGACTGAAGGCTT
GCAGGTGCAGATACAGCATCTTCAGACGAGACTCCGTAGCTCGCACGGCTCGACCAGTCT
CCTTTCGGCCAACGAAGATAATAGCGATAATGAATGATTTGTTAAGCAACTTGACTGGAC
TGGAGGACCGGTGGGAATACAACGACACACATACTCTCAGGCAAGAACGACACAATGGTA
CAGGATGGGCCATTGTATTACCCAAGAAGTCTTACATACATCAACCACTACTGGTATGCT
CTCTAAATGAAAACCCAATTAAGCAGATGCGAACGACACTTAGGTTTAGTCGTAAACTGG
TAATACTCTCAGATACTGTAGCAGAGACCTCAGTACTTATGCGGTAGCGATAACGAAACA
AGTATTAATCACGCAAACGATGATTCCTCATCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1557#0      ------------------------------------GACCCACGCGTCCGGGGACAGCAA 24
consensus_1557#1      GCGTGTGGAAGAGCTAAAGCACGAGCTGGCCTCCGCGGAGGATGAGCTCGATGCCGCCTG 60
                                                          *    * * *  **  * *  *  

consensus_1557#0      CAGCCCCACAAACCGAT--CAACATTGGCAAGATGAACGATGT---CAATCTGGATGGGT 79
consensus_1557#1      CAATCACGTGCGTCGGCTGCAGCGCACCAACGAGGAACTGAGCGGACAGACTGAA-GGCT 119
                      **  * *      **    ** *      * ** ****   *    **  *** * ** *

consensus_1557#0      TAAAGGTATCGGAAGAC--------GATGAAACTCCGTAGCTCGCACGGCTCGACCAGTC 131
consensus_1557#1      TGCAGGTGCAGATACAGCATCTTCAGACGAGACTCCGTAGCTCGCACGGCTCGACCAGTC 179
                      *  ****   *  * *         ** ** *****************************

consensus_1557#0      TCCTTTCGGCCAACGAAGATAATAGCGATAATGAATGATTTGTTAAGCGACTTGACTGGA 191
consensus_1557#1      TCCTTTCGGCCAACGAAGATAATAGCGATAATGAATGATTTGTTAAGCAACTTGACTGGA 239
                      ************************************************ ***********

consensus_1557#0      CGACTGGAGGACCGGTGGGAATACAACGACACACATACTCTCAGGCAAGAACGACACAAT 251
consensus_1557#1      ---CTGGAGGACCGGTGGGAATACAACGACACACATACTCTCAGGCAAGAACGACACAAT 296
                         *********************************************************

consensus_1557#0      GGAACAGGATATAATCGTCCCAACATTATTGCCACTTGGGCCATTGTATTACCCAAGAAG 311
consensus_1557#1      GGTACAGGAT---------------------------GGGCCATTGTATTACCCAAGAAG 329
                      ** *******                           ***********************

consensus_1557#0      TCTTACATACATCAACCACTACTGGTATGCTCTCTAAATGAAAACCCAATTAAGCAGATG 371
consensus_1557#1      TCTTACATACATCAACCACTACTGGTATGCTCTCTAAATGAAAACCCAATTAAGCAGATG 389
                      ************************************************************

consensus_1557#0      CGAACGACACTTAGGTTCAGTCGTAAACTCGTAATACTCTCAGATACTGTAGCAGAGACC 431
consensus_1557#1      CGAACGACACTTAGGTTTAGTCGTAAACTGGTAATACTCTCAGATACTGTAGCAGAGACC 449
                      ***************** *********** ******************************

consensus_1557#0      TCAGTACTTATGCGGTAGCGATAACGAAACAAGTATTAACCACGCAAACGATGATTCCTC 491
consensus_1557#1      TCAGTACTTATGCGGTAGCGATAACGAAACAAGTATTAATCACGCAAACGATGATTCCTC 509
                      *************************************** ********************

consensus_1557#0      ATCAAAATTTACTTCGATTTTCTATTTCCTTACTACCCAGCAATATGGTGTAAACTCTCC 551
consensus_1557#1      ATCAA------------------------------------------------------- 514
                      *****                                                       

consensus_1557#0      AACAAAACATATAGTACAACAGCTCGTCCCCAGTTTTAGCGAGCTACAGATCATAGCTTA 611
consensus_1557#1      ------------------------------------------------------------
                                                                                  

consensus_1557#0      TTTATATCCCTTGGAACAGAAAAGTATTGCCAATACGCAGTTAGCTCACAGATCATTCTC 671
consensus_1557#1      ------------------------------------------------------------
                                                                                  

consensus_1557#0      GTT 674
consensus_1557#1      ---