cluster # 1559

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Anopheles gambiae
cluster # 1559 cluster # 1559 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1559#0 length = 702 sequences # 1

consensus_1559#1 length = 231 sequences # 1

consensusID : consensus_1559#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 702
fasta sequence

                              [CCGGCAAGCTGATGGAGGATCTGGCGAGCGTCGATCAGAACGATCCCCAGCAGCAACTGATCGGAGGAGATCAGGAGAACAGCTTCCCGCTGGAGTGGTTTGCGAACGAAATGTCCACCAATCCGACCCTGGCCAAATCGATTCTGCAACGTTTCGTCGACACCAATCGCGACGGGCTGCTGGAAACGGGCGAGCTGATGCCGGGCGCGGGAGCGAACGGTAACGAGCTTGGGTCTGAGCTGTTCTAAGAAACGTCTCTTCTCTTCAAAAGCTCACCCAAAGCAAAGTCATTAAGGGATGGCGTCGTCTGCTAGTGGCTTGAACGTGTTTAGACTGGAGTCTGGATGGCATGGACAAAAGGGCACACCAGCAGGACACTTTCTCTGGACGCTACACAGTTATCTACATCTCTCCGCCACTCAACCATCGATTCCTGCACAAGCAACCCGTTTCTTTCAAATCCAAATGAGGCTGGCATTACTCGAATTTCCCCCCGATCTACAACTATATAAACATCCATTTGATTTATTGCAAACAAAAAAACTCCAAGAGCATATAAAATATACACGAATCTTTGAAAAAGATTAAAATCAAATGATCCTCCTCATCTCCTTCTCTCTCTCTTACACTCCTAGAGGTAAAGCAACAGAGCGGCGTTTTCCCCGCAGTTGTCTTGTTTGATTCTTTCGTTTGTACAAAGAC]

[+] EMBL BM633862             [CCGGCAAGCTGATGGAGGATCTGGCGAGCGTCGATCAGAACGATCCCCAGCAGCAACTGATCGGAGGAGATCAGGAGAACAGCTTCCCGCTGGAGTGGTTTGCGAACGAAATGTCCACCAATCCGACCCTGGCCAAATCGATTCTGCAACGTTTCGTCGACACCAATCGCGACGGGCTGCTGGAAACGGGCGAGCTGATGCCGGGCGCGGGAGCGAACGGTAACGAGCTTGGGTCTGAGCTGTTCTAAGAAACGTCTCTTCTCTTCAAAAGCTCACCCAAAGCAAAGTCATTAAGGGATGGCGTCGTCTGCTAGTGGCTTGAACGTGTTTAGACTGGAGTCTGGATGGCATGGACAAAAGGGCACACCAGCAGGACACTTTCTCTGGACGCTACACAGTTATCTACATCTCTCCGCCACTCAACCATCGATTCCTGCACAAGCAACCCGTTTCTTTCAAATCCAAATGAGGCTGGCATTACTCGAATTTCCCCCCGATCTACAACTATATAAACATCCATTTGATTTATTGCAAACAAAAAAACTCCAAGAGCATATAAAATATACACGAATCTTTGAAAAAGATTAAAATCAAATGATCCTCCTCATCTCCTTCTCTCTCTCTTACACTCCTAGAGGTAAAGCAACAGAGCGGCGTTTTCCCCGCAGTTGTCTTGTTTGATTCTTTCGTTTGTACAAAGAC]




>consensus_1559#0
CCGGCAAGCTGATGGAGGATCTGGCGAGCGTCGATCAGAACGATCCCCAGCAGCAACTGA
TCGGAGGAGATCAGGAGAACAGCTTCCCGCTGGAGTGGTTTGCGAACGAAATGTCCACCA
ATCCGACCCTGGCCAAATCGATTCTGCAACGTTTCGTCGACACCAATCGCGACGGGCTGC
TGGAAACGGGCGAGCTGATGCCGGGCGCGGGAGCGAACGGTAACGAGCTTGGGTCTGAGC
TGTTCTAAGAAACGTCTCTTCTCTTCAAAAGCTCACCCAAAGCAAAGTCATTAAGGGATG
GCGTCGTCTGCTAGTGGCTTGAACGTGTTTAGACTGGAGTCTGGATGGCATGGACAAAAG
GGCACACCAGCAGGACACTTTCTCTGGACGCTACACAGTTATCTACATCTCTCCGCCACT
CAACCATCGATTCCTGCACAAGCAACCCGTTTCTTTCAAATCCAAATGAGGCTGGCATTA
CTCGAATTTCCCCCCGATCTACAACTATATAAACATCCATTTGATTTATTGCAAACAAAA
AAACTCCAAGAGCATATAAAATATACACGAATCTTTGAAAAAGATTAAAATCAAATGATC
CTCCTCATCTCCTTCTCTCTCTCTTACACTCCTAGAGGTAAAGCAACAGAGCGGCGTTTT
CCCCGCAGTTGTCTTGTTTGATTCTTTCGTTTGTACAAAGAC

consensusID : consensus_1559#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 231
fasta sequence

                              [CGAGCTGATGCCGGGCGCGGGAGCGAACGGTAACGAGCTGGGGTCTGAGCTGTCCTAAGAAACGTCTCTGCTCTGCAAAAGCTCACCCAAAGCAAAGTCATTAAGGGAAGGCGTCGTCTGCTAGTGGCTTGAACGTGGTTAGACTGGAGTCCGGAAGGCATGGACAAAAGGGCACACCAGCAGGACACCTTCCCCGGACGCCACACAGGTAACCACAACTCCCCGCCACTC]

[+] EMBL BX618668             [CGAGCTGATGCCGGGCGCGGGAGCGAACGGTAACGAGCTGGGGTCTGAGCTGTCCTAAGAAACGTCTCTGCTCTGCAAAAGCTCACCCAAAGCAAAGTCATTAAGGGAAGGCGTCGTCTGCTAGTGGCTTGAACGTGGTTAGACTGGAGTCCGGAAGGCATGGACAAAAGGGCACACCAGCAGGACACCTTCCCCGGACGCCACACAGGTAACCACAACTCCCCGCCACTC]




>consensus_1559#1
CGAGCTGATGCCGGGCGCGGGAGCGAACGGTAACGAGCTGGGGTCTGAGCTGTCCTAAGA
AACGTCTCTGCTCTGCAAAAGCTCACCCAAAGCAAAGTCATTAAGGGAAGGCGTCGTCTG
CTAGTGGCTTGAACGTGGTTAGACTGGAGTCCGGAAGGCATGGACAAAAGGGCACACCAG
CAGGACACCTTCCCCGGACGCCACACAGGTAACCACAACTCCCCGCCACTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1559#0      CCGGCAAGCTGATGGAGGATCTGGCGAGCGTCGATCAGAACGATCCCCAGCAGCAACTGA 60
consensus_1559#1      ------------------------------------------------------------
                                                                                  

consensus_1559#0      TCGGAGGAGATCAGGAGAACAGCTTCCCGCTGGAGTGGTTTGCGAACGAAATGTCCACCA 120
consensus_1559#1      ------------------------------------------------------------
                                                                                  

consensus_1559#0      ATCCGACCCTGGCCAAATCGATTCTGCAACGTTTCGTCGACACCAATCGCGACGGGCTGC 180
consensus_1559#1      ------------------------------------------------------------
                                                                                  

consensus_1559#0      TGGAAACGGGCGAGCTGATGCCGGGCGCGGGAGCGAACGGTAACGAGCTTGGGTCTGAGC 240
consensus_1559#1      ----------CGAGCTGATGCCGGGCGCGGGAGCGAACGGTAACGAGCTGGGGTCTGAGC 50
                                *************************************** **********

consensus_1559#0      TGTTCTAAGAAACGTCTCTTCTCTTCAAAAGCTCACCCAAAGCAAAGTCATTAAGGGATG 300
consensus_1559#1      TGTCCTAAGAAACGTCTCTGCTCTGCAAAAGCTCACCCAAAGCAAAGTCATTAAGGGAAG 110
                      *** *************** **** ********************************* *

consensus_1559#0      GCGTCGTCTGCTAGTGGCTTGAACGTGTTTAGACTGGAGTCTGGATGGCATGGACAAAAG 360
consensus_1559#1      GCGTCGTCTGCTAGTGGCTTGAACGTGGTTAGACTGGAGTCCGGAAGGCATGGACAAAAG 170
                      *************************** ************* *** **************

consensus_1559#0      GGCACACCAGCAGGACACTTTCTCTGGACGCTACACAGTTATCTACATCTCTCCGCCACT 420
consensus_1559#1      GGCACACCAGCAGGACACCTTCCCCGGACGCCACACAGGTAACCACAACTCCCCGCCACT 230
                      ****************** *** * ****** ****** ** * *** *** ********

consensus_1559#0      CAACCATCGATTCCTGCACAAGCAACCCGTTTCTTTCAAATCCAAATGAGGCTGGCATTA 480
consensus_1559#1      C----------------------------------------------------------- 231
                      *                                                           

consensus_1559#0      CTCGAATTTCCCCCCGATCTACAACTATATAAACATCCATTTGATTTATTGCAAACAAAA 540
consensus_1559#1      ------------------------------------------------------------
                                                                                  

consensus_1559#0      AAACTCCAAGAGCATATAAAATATACACGAATCTTTGAAAAAGATTAAAATCAAATGATC 600
consensus_1559#1      ------------------------------------------------------------
                                                                                  

consensus_1559#0      CTCCTCATCTCCTTCTCTCTCTCTTACACTCCTAGAGGTAAAGCAACAGAGCGGCGTTTT 660
consensus_1559#1      ------------------------------------------------------------
                                                                                  

consensus_1559#0      CCCCGCAGTTGTCTTGTTTGATTCTTTCGTTTGTACAAAGAC 702
consensus_1559#1      ------------------------------------------