cluster # 1568

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Anopheles gambiae
cluster # 1568 cluster # 1568 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1568#0 length = 538 sequences # 1

consensus_1568#1 length = 309 sequences # 1

consensusID : consensus_1568#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 538
fasta sequence

                              [TGGCGAATGGATGAAGGTAACGGTACGGCGCAAACCATACGCTAACCGATTCCTGTTGGAAACTAATATCGAGGGACACGTGTCGTGCTTCAACGCCGTTATTTCGGGAGAAAATATTTCCCTTTTCGATGAGAACGGCATGATTGGTGGAGAAATTGTTCAGCCCCGTTTTCTCGTTACCGAAAGCTCGATGGGTGGAGTCGATGCATCCAGTGTAACTGCCCCAATGCCCGGAGTGCTCGACAAGCTGTTCGTTAAGCCGGGAGACACTGTAAAAGCTGGTACACCGGTAGCAGTGCTGATTGCAATGAAAATGGAACACGTTTTAAAAGCCGCAAAGGATGGAGTTGTTAAAGCAATACCTAACGCTGAAGGTAGCAACGTCCGTAAAGGCGCCACATTGATTTCGTTCGAGTGATGGAACGTTAAGAACACAACGACCTTGCATTTAACCTGTTCTAAACAGTCTGACACAAAGTGCATTTATTAGAAATTAAGGCAATTTTGTAGATTTTAGAGAAAAATATCATTGAAATGA]

[+] EMBL BX622971             [TGGCGAATGGATGAAGGTAACGGTACGGCGCAAACCATACGCTAACCGATTCCTGTTGGAAACTAATATCGAGGGACACGTGTCGTGCTTCAACGCCGTTATTTCGGGAGAAAATATTTCCCTTTTCGATGAGAACGGCATGATTGGTGGAGAAATTGTTCAGCCCCGTTTTCTCGTTACCGAAAGCTCGATGGGTGGAGTCGATGCATCCAGTGTAACTGCCCCAATGCCCGGAGTGCTCGACAAGCTGTTCGTTAAGCCGGGAGACACTGTAAAAGCTGGTACACCGGTAGCAGTGCTGATTGCAATGAAAATGGAACACGTTTTAAAAGCCGCAAAGGATGGAGTTGTTAAAGCAATACCTAACGCTGAAGGTAGCAACGTCCGTAAAGGCGCCACATTGATTTCGTTCGAGTGATGGAACGTTAAGAACACAACGACCTTGCATTTAACCTGTTCTAAACAGTCTGACACAAAGTGCATTTATTAGAAATTAAGGCAATTTTGTAGATTTTAGAGAAAAATATCATTGAAATGA]




>consensus_1568#0
TGGCGAATGGATGAAGGTAACGGTACGGCGCAAACCATACGCTAACCGATTCCTGTTGGA
AACTAATATCGAGGGACACGTGTCGTGCTTCAACGCCGTTATTTCGGGAGAAAATATTTC
CCTTTTCGATGAGAACGGCATGATTGGTGGAGAAATTGTTCAGCCCCGTTTTCTCGTTAC
CGAAAGCTCGATGGGTGGAGTCGATGCATCCAGTGTAACTGCCCCAATGCCCGGAGTGCT
CGACAAGCTGTTCGTTAAGCCGGGAGACACTGTAAAAGCTGGTACACCGGTAGCAGTGCT
GATTGCAATGAAAATGGAACACGTTTTAAAAGCCGCAAAGGATGGAGTTGTTAAAGCAAT
ACCTAACGCTGAAGGTAGCAACGTCCGTAAAGGCGCCACATTGATTTCGTTCGAGTGATG
GAACGTTAAGAACACAACGACCTTGCATTTAACCTGTTCTAAACAGTCTGACACAAAGTG
CATTTATTAGAAATTAAGGCAATTTTGTAGATTTTAGAGAAAAATATCATTGAAATGA

consensusID : consensus_1568#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 309
fasta sequence

                              [CCGCGACTACAACAGCCCCTATGCCCGGAGTGCTCGACAAGCTGTTCGTTAAGCCGGGAGACACTGTAAAAGCTGGTACACCGGTAGCAGCGCTGATTGCAATGATAATGGAACACGTTTTAAAAGCCGCAAAGGATGGAGTTGTTAAAGCAATACCTAACGCTGAAGGTAGCAACGTCCGTAAAGGCGCCACATTGATTTCCTTCTAGTGATGGAACGTTAAGAACACCACGACCTTGCATTTAACCTGTTCTAAACAGTCTGACACAAAGTGCATTTATTAGAAATTAAGGCAATTTTGTAGATTTT]

[+] EMBL BM649200             [CCGCGACTACAACAGCCCCTATGCCCGGAGTGCTCGACAAGCTGTTCGTTAAGCCGGGAGACACTGTAAAAGCTGGTACACCGGTAGCAGCGCTGATTGCAATGATAATGGAACACGTTTTAAAAGCCGCAAAGGATGGAGTTGTTAAAGCAATACCTAACGCTGAAGGTAGCAACGTCCGTAAAGGCGCCACATTGATTTCCTTCTAGTGATGGAACGTTAAGAACACCACGACCTTGCATTTAACCTGTTCTAAACAGTCTGACACAAAGTGCATTTATTAGAAATTAAGGCAATTTTGTAGATTTT]




>consensus_1568#1
CCGCGACTACAACAGCCCCTATGCCCGGAGTGCTCGACAAGCTGTTCGTTAAGCCGGGAG
ACACTGTAAAAGCTGGTACACCGGTAGCAGCGCTGATTGCAATGATAATGGAACACGTTT
TAAAAGCCGCAAAGGATGGAGTTGTTAAAGCAATACCTAACGCTGAAGGTAGCAACGTCC
GTAAAGGCGCCACATTGATTTCCTTCTAGTGATGGAACGTTAAGAACACCACGACCTTGC
ATTTAACCTGTTCTAAACAGTCTGACACAAAGTGCATTTATTAGAAATTAAGGCAATTTT
GTAGATTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1568#0      TGGCGAATGGATGAAGGTAACGGTACGGCGCAAACCATACGCTAACCGATTCCTGTTGGA 60
consensus_1568#1      ------------------------------------------------------------
                                                                                  

consensus_1568#0      AACTAATATCGAGGGACACGTGTCGTGCTTCAACGCCGTTATTTCGGGAGAAAATATTTC 120
consensus_1568#1      ------------------------------------------------------------
                                                                                  

consensus_1568#0      CCTTTTCGATGAGAACGGCATGATTGGTGGAGAAATTGTTCAGCCCCGTTTTCTCGTTAC 180
consensus_1568#1      ------------------------------------------------------------
                                                                                  

consensus_1568#0      CGAAAGCTCGATGGGTGGAGTCGATGCATCCAGTGTAACTGCCCCAATGCCCGGAGTGCT 240
consensus_1568#1      --------------------------CCGCGACTACAACAGCCCCTATGCCCGGAGTGCT 34
                                                *  * * *  *** ***** **************

consensus_1568#0      CGACAAGCTGTTCGTTAAGCCGGGAGACACTGTAAAAGCTGGTACACCGGTAGCAGTGCT 300
consensus_1568#1      CGACAAGCTGTTCGTTAAGCCGGGAGACACTGTAAAAGCTGGTACACCGGTAGCAGCGCT 94
                      ******************************************************** ***

consensus_1568#0      GATTGCAATGAAAATGGAACACGTTTTAAAAGCCGCAAAGGATGGAGTTGTTAAAGCAAT 360
consensus_1568#1      GATTGCAATGATAATGGAACACGTTTTAAAAGCCGCAAAGGATGGAGTTGTTAAAGCAAT 154
                      *********** ************************************************

consensus_1568#0      ACCTAACGCTGAAGGTAGCAACGTCCGTAAAGGCGCCACATTGATTTCGTTCGAGTGATG 420
consensus_1568#1      ACCTAACGCTGAAGGTAGCAACGTCCGTAAAGGCGCCACATTGATTTCCTTCTAGTGATG 214
                      ************************************************ *** *******

consensus_1568#0      GAACGTTAAGAACACAACGACCTTGCATTTAACCTGTTCTAAACAGTCTGACACAAAGTG 480
consensus_1568#1      GAACGTTAAGAACACCACGACCTTGCATTTAACCTGTTCTAAACAGTCTGACACAAAGTG 274
                      *************** ********************************************

consensus_1568#0      CATTTATTAGAAATTAAGGCAATTTTGTAGATTTTAGAGAAAAATATCATTGAAATGA 538
consensus_1568#1      CATTTATTAGAAATTAAGGCAATTTTGTAGATTTT----------------------- 309
                      ***********************************